Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 1.4e-136 489.6 245 100.0
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 1.9e-93 346.3 243 69.5
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.1e-91 340.5 244 66.8
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 2.6e-90 335.9 244 66.8
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 2.5e-88 329.3 244 65.2
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 2.5e-88 329.3 243 65.4
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 9.4e-88 327.4 244 64.3
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 1.2e-87 327.0 244 65.6
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 1.6e-87 326.6 245 63.7
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 2.1e-87 326.2 243 65.8
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 2.1e-87 326.2 244 64.3
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 6.1e-87 324.7 243 64.6
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 1.0e-86 323.9 245 63.7
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 3.0e-86 322.4 244 64.8
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 3.9e-86 322.0 244 61.9
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 5.1e-86 321.6 244 63.9
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 5.1e-86 321.6 244 63.9
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 5.1e-86 321.6 243 65.0
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 6.7e-86 321.2 244 64.8
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 8.8e-86 320.9 244 61.5
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 1.1e-85 320.5 244 63.9
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.5e-85 320.1 244 64.8
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 2.6e-85 319.3 245 63.7
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 4.4e-85 318.5 244 62.3
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 4.4e-85 318.5 244 62.3
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 9.7e-85 317.4 243 65.4
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 1.3e-84 317.0 244 64.3
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 1.7e-84 316.6 244 63.1
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 1.7e-84 316.6 244 63.5
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 2.2e-84 316.2 244 63.9
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 8.2e-84 314.3 244 63.9
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 8.2e-84 314.3 245 63.7
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 1.8e-83 313.2 244 64.8
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 2.4e-83 312.8 244 64.3
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.4e-83 312.8 244 62.3
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 3.1e-83 312.4 244 63.1
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 5.3e-83 311.6 244 63.5
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 5.3e-83 311.6 244 61.5
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 5.3e-83 311.6 244 63.1
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 6.9e-83 311.2 244 61.9
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 9.1e-83 310.8 244 61.5
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 1.5e-82 310.1 244 61.1
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 2.0e-82 309.7 235 66.0
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 2.0e-82 309.7 244 61.5
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 2.0e-82 309.7 243 63.4
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 4.5e-82 308.5 244 61.5
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 5.9e-82 308.1 244 62.3
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 7.7e-82 307.8 242 62.4
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 1.7e-81 306.6 243 63.0
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 2.9e-81 305.8 243 62.6
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 3.8e-81 305.4 244 62.7
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 1.1e-80 303.9 242 62.4
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 1.4e-80 303.5 244 60.7
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 1.9e-80 303.1 239 61.9
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 5.5e-80 301.6 243 61.3
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 9.4e-80 300.8 225 63.6
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 9.4e-80 300.8 243 60.9
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 1.2e-79 300.4 243 62.1
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 2.1e-79 299.7 243 61.3
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 4.7e-79 298.5 242 61.6
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 1.8e-78 296.6 282 55.3
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 1.8e-78 296.6 244 59.8
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 3.0e-78 295.8 267 56.9
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 1.1e-77 293.9 243 61.7
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 1.5e-77 293.5 243 62.1
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 2.0e-77 293.1 243 60.9
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 2.0e-77 293.1 213 67.6
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 4.4e-77 292.0 243 62.1
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 4.4e-77 292.0 243 60.5
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 7.4e-77 291.2 244 58.6
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.3e-76 290.4 243 60.5
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 1.7e-76 290.0 241 60.2
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 2.2e-76 289.7 229 63.3
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 2.8e-76 289.3 243 59.7
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 3.7e-76 288.9 243 59.7
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 4.8e-76 288.5 229 62.9
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 1.8e-75 286.6 243 59.7
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 1.2e-74 283.9 243 57.2
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 3.5e-74 282.3 243 57.2
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 4.5e-74 282.0 244 58.6
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 4.5e-74 282.0 244 59.0
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 5.9e-74 281.6 200 67.5
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 8.5e-73 277.7 243 58.0
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 1.1e-72 277.3 194 67.0
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 1.2e-71 273.9 237 57.8
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 3.6e-71 272.3 244 55.7
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 6.1e-71 271.6 200 65.5
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 8.8e-70 267.7 224 61.2
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.5e-69 266.9 216 61.1
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 9.7e-69 264.2 243 54.7
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 8.2e-68 261.2 244 55.3
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.1e-67 260.8 243 53.9
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 1.4e-67 260.4 253 53.4
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 9.1e-67 257.7 243 55.6
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 7.7e-66 254.6 196 62.2
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.0e-65 254.2 244 51.2
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 1.7e-65 253.4 216 58.8
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 2.2e-65 253.1 216 57.9
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 2.2e-65 253.1 192 63.5
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.9e-64 250.0 243 49.8
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.2e-63 247.3 244 48.8
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 3.6e-63 245.7 217 58.5
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 3.6e-63 245.7 217 58.5
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 3.6e-63 245.7 197 62.4
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 3.6e-63 245.7 193 63.2
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 6.1e-63 245.0 200 59.0
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 6.1e-63 245.0 217 58.5
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 1.4e-62 243.8 176 65.9
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 1.8e-62 243.4 217 58.1
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 5.7e-61 238.4 232 55.2
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.1e-59 234.2 244 47.5
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 3.8e-57 225.7 165 65.5
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.5e-56 223.0 223 51.1
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 2.5e-56 223.0 213 52.1
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 2.1e-55 219.9 183 59.0
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.4e-54 217.2 196 57.7
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 1.8e-54 216.9 244 48.0
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 3.4e-53 212.6 242 47.9
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 5.4e-51 205.3 194 56.2
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 5.9e-50 201.8 164 61.0
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 7.8e-50 201.4 196 54.6
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 1.3e-49 200.7 216 47.2
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 3.3e-48 196.1 238 50.0
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 2.1e-47 193.4 143 63.6
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.8e-47 193.0 193 51.3
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 1.8e-46 190.3 179 53.6
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 4.9e-44 182.2 172 55.8
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 8.3e-44 181.4 194 52.6
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 7.0e-43 178.3 232 44.8
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 1.6e-42 177.2 166 54.8
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 8.0e-39 164.9 135 61.5
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.4e-38 164.1 106 71.7
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 1.2e-37 161.0 243 41.6
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 2.0e-37 160.2 192 46.4
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 3.7e-36 156.0 107 69.2
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 3.2e-35 152.9 219 40.2
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 7.8e-34 148.3 104 66.3
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.3e-33 147.5 103 68.9
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 6.8e-30 135.2 104 64.4
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 2.4e-27 126.7 103 59.2
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 3.3e-24 116.3 210 37.6
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 1.2e-23 114.4 98 55.1
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 4.0e-22 109.4 157 43.9
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 2.2e-20 103.6 161 34.8
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 4.7e-15 85.9 67 65.7
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-13 80.1 85 44.7
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.9e-12 76.6 68 55.9
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 5.4e-11 72.4 72 51.4
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 3.0e-09 66.6 65 55.4
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 6.6e-09 65.5 126 31.7
SEGI_37983 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 1.5e-08 64.3 100 39.0
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.6e-07 59.7 57 54.4


User provided reference genes

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