Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 1.1e-303 1045.8 511 100.0
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 7.9e-206 720.7 512 69.3
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 4.8e-203 711.4 512 68.4
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.8e-203 711.4 518 68.3
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 6.9e-202 707.6 521 68.5
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 5.9e-201 704.5 502 70.9
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 1.1e-199 700.3 530 66.2
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 7.2e-199 697.6 522 68.0
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 1.2e-198 696.8 512 67.6
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 3.9e-197 691.8 500 67.0
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 7.4e-196 687.6 512 67.2
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 7.4e-196 687.6 510 67.1
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 9.7e-196 687.2 513 66.7
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 8.2e-195 684.1 505 67.1
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 2.4e-194 682.6 511 65.6
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 3.1e-194 682.2 511 65.9
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 3.1e-194 682.2 510 66.5
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 4.1e-194 681.8 511 66.3
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 7.0e-194 681.0 512 67.0
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 1.6e-193 679.9 509 67.2
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 2.6e-193 679.1 512 65.6
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 4.5e-193 678.3 518 66.4
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 5.9e-193 677.9 510 66.1
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 1.3e-192 676.8 510 66.3
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 5.0e-192 674.9 512 66.2
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 8.5e-192 674.1 510 66.5
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 1.1e-191 673.7 510 65.5
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.5e-191 673.3 512 66.0
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 1.5e-191 673.3 511 67.1
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 3.2e-191 672.2 513 66.9
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 4.2e-191 671.8 513 66.5
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 5.5e-191 671.4 508 67.3
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 7.2e-191 671.0 511 63.2
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 9.4e-191 670.6 512 66.0
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.2e-190 670.2 513 66.5
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 2.1e-190 669.5 512 65.8
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 8.0e-190 667.5 511 64.2
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 1.0e-189 667.2 505 65.5
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.0e-189 667.2 512 65.6
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 1.0e-189 667.2 512 65.4
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 4.0e-189 665.2 513 65.9
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 6.7e-189 664.5 512 65.0
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 6.7e-189 664.5 512 62.3
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 8.8e-189 664.1 512 65.8
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 1.5e-188 663.3 513 62.6
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 1.5e-188 663.3 513 66.1
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 2.6e-188 662.5 510 64.7
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 3.3e-188 662.1 511 64.6
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 3.3e-188 662.1 518 66.0
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 9.7e-188 660.6 513 63.9
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 4.8e-187 658.3 550 61.1
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 2.4e-186 656.0 550 60.9
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 3.1e-186 655.6 510 62.2
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.0e-185 652.9 546 62.1
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 1.0e-184 650.6 507 64.3
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 1.3e-184 650.2 513 61.0
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.3e-184 650.2 511 64.0
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.2e-184 649.4 512 64.8
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 6.5e-184 647.9 511 64.0
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 8.5e-184 647.5 510 64.1
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 2.1e-182 642.9 509 62.3
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 2.1e-182 642.9 513 63.9
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 6.1e-182 641.3 509 62.9
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 6.1e-182 641.3 501 64.1
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.3e-181 639.4 511 63.4
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 5.2e-181 638.3 504 63.7
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 5.2e-181 638.3 477 67.5
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 8.8e-181 637.5 509 63.1
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 2.0e-180 636.3 509 63.1
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 2.0e-180 636.3 508 64.0
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 2.0e-180 636.3 462 69.5
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 2.6e-180 636.0 498 65.9
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 5.7e-180 634.8 511 63.4
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 7.5e-180 634.4 508 62.8
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 7.5e-180 634.4 485 66.4
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 9.8e-180 634.0 508 63.4
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 1.7e-179 633.3 511 63.0
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 1.7e-179 633.3 512 62.7
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 2.8e-179 632.5 512 62.7
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 2.8e-179 632.5 512 62.7
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 2.8e-179 632.5 509 63.1
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 3.7e-179 632.1 508 63.4
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 3.7e-179 632.1 511 62.8
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 3.7e-179 632.1 480 66.9
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 1.1e-178 630.6 511 63.0
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 1.4e-178 630.2 508 63.2
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 5.4e-178 628.2 510 62.5
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 7.0e-178 627.9 503 62.4
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 7.0e-178 627.9 502 62.7
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.6e-177 626.7 492 62.4
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.6e-177 626.7 502 62.7
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 2.0e-177 626.3 510 62.5
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 2.7e-177 625.9 511 61.8
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 1.7e-176 623.2 520 61.9
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 3.8e-176 622.1 510 60.6
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 5.0e-176 621.7 511 61.4
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 1.5e-175 620.2 517 61.3
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 1.9e-175 619.8 582 54.8
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 4.2e-175 618.6 599 55.6
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 7.2e-175 617.8 494 64.4
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 7.2e-175 617.8 513 63.4
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 7.2e-175 617.8 513 63.4
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 4.7e-174 615.1 510 62.4
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 6.1e-174 614.8 510 62.0
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.8e-173 613.2 511 61.8
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 2.3e-173 612.8 505 61.4
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 6.8e-173 611.3 513 59.5
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 5.7e-172 608.2 462 64.9
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 8.3e-171 604.4 512 62.1
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 1.2e-169 600.5 510 58.8
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 4.5e-169 598.6 451 67.0
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 7.8e-169 597.8 524 59.9
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 1.5e-167 593.6 564 56.4
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 6.1e-166 588.2 513 61.2
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.4e-165 587.0 513 61.0
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 4.4e-164 582.0 534 56.7
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.7e-161 572.8 538 58.7
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.0e-160 570.9 502 57.6
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 1.3e-160 570.5 513 58.1
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 3.9e-160 568.9 470 62.8
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 1.1e-159 567.4 510 57.1
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 3.7e-155 552.4 454 61.5
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 5.2e-149 531.9 533 52.2
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 2.2e-147 526.6 403 65.3
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 2.4e-146 523.1 545 52.1
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 4.6e-145 518.8 401 63.3
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 4.4e-140 502.3 661 45.7
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 2.3e-136 490.0 420 59.0
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 3.4e-132 476.1 455 56.3
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 4.2e-130 469.2 486 54.1
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 2.5e-111 406.8 338 61.2
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 4.8e-110 402.5 279 70.6
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 2.2e-107 393.7 455 49.0
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.3e-102 377.9 274 69.7
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 6.3e-102 375.6 273 65.9
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 1.9e-90 337.4 244 67.2
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 6.1e-89 332.4 262 63.0
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 3.4e-84 316.6 262 61.5
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 9.4e-66 255.4 211 60.7
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 1.4e-64 251.5 503 35.8
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 1.2e-60 238.4 419 36.3
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 1.5e-58 231.5 217 57.1
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 2.5e-58 230.7 391 35.5
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 9.8e-47 192.2 136 68.4
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 7.5e-39 166.0 188 46.3
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.9e-35 153.7 127 59.8
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 2.1e-33 147.9 109 68.8
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 3.1e-32 144.1 187 40.1
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 9.5e-26 122.5 112 58.0
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 9.5e-26 122.5 68 80.9
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.1e-24 119.0 250 34.4
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.4e-24 118.6 250 34.4
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 2.3e-19 101.3 169 30.8
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 8.7e-19 99.4 63 76.2
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 6.4e-14 83.2 113 45.1
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 2.1e-12 78.2 85 52.9
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 3.5e-12 77.4 85 50.6
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 7.3e-10 69.7 219 26.5
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 2.1e-09 68.2 61 59.0
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 4.0e-08 63.9 98 30.6
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 2.2e-06 58.2 35 71.4
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.2e-06 58.2 36 75.0


User provided reference genes

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