Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025704 Vanilla planifolia HOM05D000018 ORTHO05D431542 2.1e-58 228.8 112 100.0
HPP92_025697 Vanilla planifolia HOM05D000018 ORTHO05D003948 7.2e-11 70.9 77 51.9
HPP92_025706 Vanilla planifolia HOM05D000018 ORTHO05D003948 8.0e-10 67.4 54 68.5
MD02G1132200 Malus domestica HOM05D000018 ORTHO05D003948 2.3e-09 65.9 55 60.0
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 5.2e-09 64.7 55 58.2
AL5G31640 Arabidopsis lyrata HOM05D000018 ORTHO05D003948 1.5e-08 63.2 59 55.9
BcaB01g00539 Brassica carinata HOM05D000018 ORTHO05D003948 1.5e-08 63.2 59 57.6
MD15G1246200 Malus domestica HOM05D000018 ORTHO05D003948 2.0e-08 62.8 55 58.2
Prupe.7G168300 Prunus persica HOM05D000018 ORTHO05D003948 2.0e-08 62.8 59 54.2
C07p46240 Brassica napus HOM05D000441 ORTHO05D000340 3.4e-08 62.0 59 55.9
BolC7t45140H Brassica oleracea HOM05D000018 ORTHO05D003948 3.4e-08 62.0 59 55.9
CARHR160820 Cardamine hirsuta HOM05D000018 ORTHO05D003948 3.4e-08 62.0 59 54.2
vmacro04354 Vaccinium macrocarpon HOM05D000018 ORTHO05D003948 3.4e-08 62.0 55 60.0
vmacro22890 Vaccinium macrocarpon HOM05D000018 ORTHO05D003948 3.4e-08 62.0 55 60.0
Carub.0005s1761 Capsella rubella HOM05D000018 ORTHO05D003948 4.4e-08 61.6 59 54.2
Cpa.g.sc6.253 Carica papaya HOM05D000018 ORTHO05D003948 4.4e-08 61.6 59 52.5
Os04g0662600 Oryza sativa ssp. japonica HOM05D000018 ORTHO05D003948 4.4e-08 61.6 55 61.8
Sc03g0003570 Simmondsia chinensis HOM05D000018 ORTHO05D003948 4.4e-08 61.6 55 56.4
FvH4_1g11810 Fragaria vesca HOM05D000018 ORTHO05D003948 5.7e-08 61.2 59 49.2
FAN19G1561 Fragaria x ananassa HOM05D000018 ORTHO05D003948 5.7e-08 61.2 59 49.2
FAN23G2908 Fragaria x ananassa HOM05D000018 ORTHO05D003948 5.7e-08 61.2 59 49.2
FAN26G0281 Fragaria x ananassa HOM05D000018 ORTHO05D003948 5.7e-08 61.2 59 49.2
FAN28G0388 Fragaria x ananassa HOM05D000018 ORTHO05D003948 5.7e-08 61.2 59 49.2
Nn5g30144 Nelumbo nucifera HOM05D000018 ORTHO05D003948 5.7e-08 61.2 78 42.3
QL06p032767 Quercus lobata HOM05D000018 ORTHO05D003948 5.7e-08 61.2 59 50.8
C08p26510 Brassica napus HOM05D000018 ORTHO05D003948 7.5e-08 60.8 59 54.2
BolC8t50265H Brassica oleracea HOM05D000018 ORTHO05D003948 7.5e-08 60.8 59 54.2
Gohir.A12G059400 Gossypium hirsutum HOM05D000018 ORTHO05D003948 7.5e-08 60.8 55 54.5
Gohir.D12G059800 Gossypium hirsutum HOM05D000018 ORTHO05D003948 7.5e-08 60.8 55 54.5
Gorai.008G062900 Gossypium raimondii HOM05D000018 ORTHO05D003948 7.5e-08 60.8 55 54.5
AT3G51240 Arabidopsis thaliana HOM05D000018 ORTHO05D003948 9.8e-08 60.5 59 54.2
A09p44250 Brassica napus HOM05D000018 ORTHO05D003948 9.8e-08 60.5 59 54.2
BraA09t39887Z Brassica rapa HOM05D000018 ORTHO05D003948 9.8e-08 60.5 59 54.2
CiPaw.07G058600 Carya illinoinensis HOM05D000018 ORTHO05D003948 9.8e-08 60.5 59 52.5
Manes.02G104700 Manihot esculenta HOM05D000018 ORTHO05D003948 9.8e-08 60.5 55 56.4
Oeu046264.1 Olea europaea HOM05D000018 ORTHO05D003948 9.8e-08 60.5 55 58.2
RcHm_v2.0_Chr2g0099421 Rosa chinensis HOM05D000018 ORTHO05D003948 9.8e-08 60.5 59 47.5
TAR628G0707 Trochodendron aralioides HOM05D000018 ORTHO05D003948 9.8e-08 60.5 55 56.4
Haze_03762 Corylus avellana HOM05D000018 ORTHO05D003948 1.3e-07 60.1 55 54.5
Glyma.01G166200 Glycine max HOM05D000018 ORTHO05D003948 1.3e-07 60.1 51 60.8
Rhsim07G0247500 Rhododendron simsii HOM05D000018 ORTHO05D003948 1.3e-07 60.1 55 58.2
RhsimUnG0066200 Rhododendron simsii HOM05D000018 ORTHO05D003948 1.3e-07 60.1 55 58.2
Dinv39519 Davidia involucrata HOM05D000018 ORTHO05D003948 1.7e-07 59.7 55 56.4
Ah.03g148770 Amaranthus hybridus HOM05D000018 ORTHO05D003948 2.2e-07 59.3 60 50.0
Potri.005G113900 Populus trichocarpa HOM05D000018 ORTHO05D003948 2.2e-07 59.3 55 54.5
Sabra05G0093200 Salix brachista HOM05D000018 ORTHO05D003948 2.2e-07 59.3 55 54.5
Sabra05G0093300 Salix brachista HOM05D000018 ORTHO05D003948 2.2e-07 59.3 55 54.5
TWI53G0595 Tripterygium wilfordii HOM05D000018 ORTHO05D003948 2.2e-07 59.3 57 56.1
Atru.chr3.799 Acer truncatum HOM05D000018 ORTHO05D003948 2.8e-07 58.9 55 54.5
Cfa006973 Carpinus fangiana HOM05D000018 ORTHO05D003948 2.8e-07 58.9 55 52.7
Duzib147G1489 Durio zibethinus HOM05D000018 ORTHO05D003948 2.8e-07 58.9 55 52.7
Medtr5g022020 Medicago truncatula HOM05D000018 ORTHO05D003948 2.8e-07 58.9 51 60.8
A03p48210 Brassica napus HOM05D000441 ORTHO05D000340 3.7e-07 58.5 59 52.5
BraA03t13929Z Brassica rapa HOM05D000018 ORTHO05D003948 3.7e-07 58.5 59 52.5
Cc07_g10740 Coffea canephora HOM05D000018 ORTHO05D003948 3.7e-07 58.5 55 52.7
Lj4g0003068 Lotus japonicus HOM05D000018 ORTHO05D003948 3.7e-07 58.5 55 56.4
Peaxi162Scf00328g01214 Petunia axillaris HOM05D000018 ORTHO05D003948 3.7e-07 58.5 55 52.7
Phvul.003G261900 Phaseolus vulgaris HOM05D000018 ORTHO05D003948 3.7e-07 58.5 55 54.5
Thecc.01G018700 Theobroma cacao HOM05D000018 ORTHO05D003948 3.7e-07 58.5 55 52.7
Aa31LG4G19270 Aethionema arabicum HOM05D000018 ORTHO05D003948 4.8e-07 58.2 59 50.8
CSS0016177 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D003948 4.8e-07 58.2 57 54.4
Eucgr.J02430 Eucalyptus grandis HOM05D000018 ORTHO05D003948 4.8e-07 58.2 59 50.8
TWI09G1391 Tripterygium wilfordii HOM05D000018 ORTHO05D003948 4.8e-07 58.2 55 58.2
Ca_22375_v3 Cicer arietinum L. HOM05D000018 ORTHO05D003948 6.3e-07 57.8 55 56.4
COL.COLO4_21907 Corchorus olitorius HOM05D000018 ORTHO05D003948 6.3e-07 57.8 55 54.5
Gohir.A11G175300 Gossypium hirsutum HOM05D000018 ORTHO05D003948 6.3e-07 57.8 59 50.8
Potri.005G113700 Populus trichocarpa HOM05D000018 ORTHO05D003948 6.3e-07 57.8 55 52.7
CDE05G0544 Ceratophyllum demersum HOM05D000018 ORTHO05D003948 8.3e-07 57.4 55 58.2
Duzib264G0186 Durio zibethinus HOM05D000018 ORTHO05D003948 8.3e-07 57.4 55 52.7
Migut.C00836 Erythranthe guttata HOM05D000018 ORTHO05D003948 8.3e-07 57.4 51 62.7
Lalb_Chr09g0321711 Lupinus albus HOM05D000018 ORTHO05D003948 8.3e-07 57.4 55 56.4
Glyma.02G048600 Glycine max HOM05D000018 ORTHO05D003948 1.1e-06 57.0 58 51.7
PGR102G0755 Punica granatum HOM05D000018 ORTHO05D003948 1.1e-06 57.0 57 57.9
PGR119G2467 Punica granatum HOM05D000018 ORTHO05D003948 1.1e-06 57.0 52 59.6
SHI08512 Sapria himalayana HOM05D000018 ORTHO05D003948 1.1e-06 57.0 84 39.3
SEGI_20240 Sequoiadendron giganteum HOM05D000018 ORTHO05D003948 1.1e-06 57.0 66 51.5
unitig_747.g21533 Utricularia gibba HOM05D000018 ORTHO05D003948 1.1e-06 57.0 52 61.5
Aqoxy2G02048 Aquilegia oxysepala HOM05D000018 ORTHO05D003948 1.4e-06 56.6 55 54.5
arahy.Tifrunner.gnm1.ann1.79B99S Arachis hypogaea HOM05D000018 ORTHO05D003948 1.4e-06 56.6 58 48.3
arahy.Tifrunner.gnm1.ann1.HE8J5U Arachis hypogaea HOM05D000018 ORTHO05D003948 1.4e-06 56.6 58 48.3
Ca_22376_v3 Cicer arietinum L. HOM05D000018 ORTHO05D003948 1.4e-06 56.6 56 55.4
Ca_25823_v3 Cicer arietinum L. HOM05D000018 ORTHO05D003948 1.4e-06 56.6 51 56.9
Glyma.02G048400 Glycine max HOM05D000018 ORTHO05D003948 1.4e-06 56.6 55 54.5
Gohir.D11G182800 Gossypium hirsutum HOM05D000018 ORTHO05D003948 1.4e-06 56.6 59 50.8
Gorai.007G194700 Gossypium raimondii HOM05D000018 ORTHO05D003948 1.4e-06 56.6 59 50.8
Nn1g05894 Nelumbo nucifera HOM05D000018 ORTHO05D003948 1.4e-06 56.6 55 52.7
THA.LOC104821327 Tarenaya hassleriana HOM05D000018 ORTHO05D003948 1.4e-06 56.6 59 52.5
Actinidia37933 Actinidia chinensis HOM05D000018 ORTHO05D003948 1.8e-06 56.2 55 54.5
CANSAT25G2993 Cannabis sativa HOM05D000018 ORTHO05D003948 1.8e-06 56.2 56 55.4
Ciclev10025931m.g Citrus clementina HOM05D000018 ORTHO05D003948 1.8e-06 56.2 59 50.8
PSO541G2798 Papaver somniferum HOM05D000018 ORTHO05D003948 1.8e-06 56.2 57 50.9
Sp5g10980 Schrenkiella parvula HOM05D000018 ORTHO05D003948 1.8e-06 56.2 59 50.8
Sed0005336 Sechium edule HOM05D000018 ORTHO05D003948 1.8e-06 56.2 62 48.4
Hund16491 Selenicereus undatus HOM05D000018 ORTHO05D003948 1.8e-06 56.2 60 50.0
TPR.G39926 Trifolium pratense HOM05D000018 ORTHO05D003948 1.8e-06 56.2 58 50.0
Migut.N03161 Erythranthe guttata HOM05D000018 ORTHO05D003948 2.4e-06 55.8 68 47.1
Lj2A610G29 Lonicera japonica HOM05D000018 ORTHO05D003948 2.4e-06 55.8 55 50.9
Psat4g100080 Pisum sativum HOM05D000018 ORTHO05D003948 2.4e-06 55.8 58 48.3
Sc26g0004400 Simmondsia chinensis HOM05D000018 ORTHO05D003948 2.4e-06 55.8 61 50.8
EL10Ac1g02207 Beta vulgaris HOM05D000018 ORTHO05D003948 3.1e-06 55.5 70 47.1
CDE05G3201 Ceratophyllum demersum HOM05D000018 ORTHO05D003948 3.1e-06 55.5 55 56.4
COL.COLO4_32789 Corchorus olitorius HOM05D000018 ORTHO05D003948 3.1e-06 55.5 54 50.0
Lj3g0023841 Lotus japonicus HOM05D000018 ORTHO05D003948 3.1e-06 55.5 55 54.5
AUR62029466 Chenopodium quinoa HOM05D000018 ORTHO05D003948 4.1e-06 55.1 63 50.8
Lj4A24T50 Lonicera japonica HOM05D000018 ORTHO05D003948 4.1e-06 55.1 55 50.9
VMungo0251G1315 Vigna mungo HOM05D000018 ORTHO05D003948 4.1e-06 55.1 55 52.7
ATR0810G166 Amborella trichopoda HOM05D000018 ORTHO05D003948 5.4e-06 54.7 55 52.7
AUR62041911 Chenopodium quinoa HOM05D000018 ORTHO05D003948 5.4e-06 54.7 72 47.2
vmacro18413 Vaccinium macrocarpon HOM05D000018 ORTHO05D003948 5.4e-06 54.7 51 51.0
MSTRG.25249 Avicennia marina HOM05D000018 ORTHO05D003948 7.0e-06 54.3 52 55.8
CSS0019002 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D003948 7.0e-06 54.3 55 54.5
Nitab4.5_0000864g0050 Nicotiana tabacum HOM05D000018 ORTHO05D003948 7.0e-06 54.3 58 51.7
PSO675G4501 Papaver somniferum HOM05D000018 ORTHO05D003948 7.0e-06 54.3 57 49.1
Psat4g097880 Pisum sativum HOM05D000018 ORTHO05D003948 7.0e-06 54.3 55 49.1
Rhsim08G0033600 Rhododendron simsii HOM05D000018 ORTHO05D003948 7.0e-06 54.3 51 52.9
Actinidia28704 Actinidia chinensis HOM05D000018 ORTHO05D003948 9.1e-06 53.9 56 50.0
Nitab4.5_0026775g0010 Nicotiana tabacum HOM05D000018 ORTHO05D003948 9.1e-06 53.9 58 50.0


User provided reference genes

Program Settings