Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 0.0e+00 1431.0 711 100.0
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 1.1e-205 720.7 585 65.1
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 5.5e-205 718.4 632 62.0
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 8.7e-203 711.1 577 64.1
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.2e-201 706.4 577 64.3
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 1.4e-200 703.7 660 58.5
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 4.1e-200 702.2 584 62.7
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 3.0e-195 686.0 576 61.6
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 3.9e-195 685.6 578 61.4
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 8.8e-195 684.5 578 61.2
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 2.0e-194 683.3 578 62.8
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 5.7e-194 681.8 687 56.2
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 5.7e-194 681.8 681 54.9
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 5.7e-194 681.8 665 57.3
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 9.7e-194 681.0 578 60.9
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 9.7e-194 681.0 578 60.9
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 9.7e-194 681.0 578 60.9
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 1.7e-193 680.2 579 62.2
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.7e-193 679.1 578 60.9
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 1.1e-192 677.6 651 56.7
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 4.1e-192 675.6 628 57.6
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 9.1e-192 674.5 647 56.4
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.4e-191 672.5 577 61.9
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 4.5e-191 672.2 579 62.2
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.3e-190 670.6 579 62.0
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 1.7e-190 670.2 589 60.8
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 1.7e-190 670.2 685 54.5
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 1.7e-190 670.2 685 54.5
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 1.7e-190 670.2 639 56.3
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 3.8e-190 669.1 578 61.8
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 5.0e-190 668.7 576 61.1
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 6.5e-190 668.3 577 61.9
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 1.9e-189 666.8 576 60.9
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.5e-189 666.4 578 61.9
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 2.5e-189 666.4 577 60.7
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.2e-189 666.0 577 61.4
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 9.4e-189 664.5 657 56.8
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.6e-188 663.7 659 55.7
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 3.6e-188 662.5 574 61.8
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 6.1e-188 661.8 688 54.5
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 7.9e-188 661.4 577 61.4
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 1.4e-187 660.6 578 61.2
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 3.0e-187 659.4 690 54.3
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 3.9e-187 659.1 570 61.9
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 3.9e-187 659.1 578 60.4
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 1.1e-186 657.5 579 59.4
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 1.1e-186 657.5 572 61.2
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 1.1e-186 657.5 686 55.2
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.5e-186 657.1 578 60.2
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 1.5e-186 657.1 681 54.8
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 1.5e-186 657.1 681 54.8
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 2.0e-186 656.8 578 60.4
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 5.7e-186 655.2 685 53.4
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 7.4e-186 654.8 618 58.6
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 1.3e-185 654.1 695 54.1
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.3e-185 654.1 683 54.0
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 1.3e-185 654.1 581 59.6
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 1.3e-185 654.1 581 60.1
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 1.7e-185 653.7 555 61.4
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 3.7e-185 652.5 663 56.0
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 3.7e-185 652.5 580 59.8
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 2.4e-184 649.8 640 56.6
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 5.3e-184 648.7 588 58.5
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 5.3e-184 648.7 649 55.3
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 2.6e-183 646.4 688 53.5
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 3.8e-182 642.5 573 60.0
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 5.0e-182 642.1 581 59.4
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.5e-181 640.6 577 59.6
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 2.5e-181 639.8 577 58.9
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 2.5e-181 639.8 577 58.9
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 9.4e-181 637.9 577 58.9
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 9.4e-181 637.9 581 59.2
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 1.2e-180 637.5 569 58.9
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 2.1e-180 636.7 577 59.3
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 2.1e-180 636.7 559 60.6
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 3.6e-180 636.0 649 55.3
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 8.0e-180 634.8 578 58.3
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 1.7e-177 627.1 690 53.5
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 3.7e-177 625.9 687 52.8
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 4.8e-177 625.5 577 57.7
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 1.1e-176 624.4 580 58.4
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 4.1e-176 622.5 592 56.8
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 5.3e-176 622.1 686 53.2
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 7.0e-176 621.7 576 58.9
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 1.2e-175 620.9 576 57.6
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 1.6e-175 620.5 576 57.8
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 2.0e-175 620.2 686 53.1
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 2.0e-175 620.2 686 53.1
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 2.0e-175 620.2 645 54.0
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 2.6e-175 619.8 580 58.4
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 7.7e-175 618.2 526 63.5
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 1.0e-174 617.8 589 58.4
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 2.2e-174 616.7 687 52.3
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 2.2e-174 616.7 645 55.0
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 2.9e-174 616.3 576 57.6
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 5.0e-174 615.5 692 52.7
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 5.0e-174 615.5 558 59.3
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 6.5e-174 615.1 587 57.4
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 3.2e-173 612.8 584 57.0
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 3.6e-172 609.4 576 56.6
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 1.0e-171 607.8 568 57.0
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 7.5e-170 601.7 699 50.2
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 9.8e-170 601.3 679 51.0
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 2.2e-169 600.1 645 53.0
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 2.4e-168 596.7 673 51.1
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 7.0e-168 595.1 700 49.6
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 5.0e-166 589.0 662 51.2
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 1.1e-165 587.8 587 55.0
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 5.5e-165 585.5 549 57.4
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 3.0e-163 579.7 640 53.0
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 3.0e-163 579.7 640 53.0
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 3.0e-163 579.7 640 53.0
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 8.8e-163 578.2 580 55.0
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 4.4e-162 575.9 530 58.1
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 2.2e-161 573.5 554 56.9
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 2.4e-160 570.1 618 56.1
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 8.6e-158 561.6 678 50.6
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 2.8e-156 556.6 671 49.8
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 1.8e-155 553.9 566 54.1
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 3.3e-149 533.1 568 54.4
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 3.4e-146 523.1 682 47.4
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 5.8e-146 522.3 536 55.4
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 4.1e-144 516.2 671 47.1
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 2.8e-140 503.4 605 47.4
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 3.2e-136 490.0 428 63.6
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 1.2e-130 471.5 455 58.0
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 1.6e-127 461.1 642 44.9
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 5.2e-123 446.0 415 54.9
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 8.9e-123 445.3 401 61.6
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 3.8e-121 439.9 399 54.6
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 2.4e-91 340.9 351 53.6
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.1e-77 295.4 305 52.8
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 1.5e-61 241.9 365 44.9
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 2.1e-55 221.5 272 47.8
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 4.1e-51 207.2 181 58.6
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 2.6e-45 188.0 301 41.5
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 1.1e-35 156.0 189 46.0
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 3.2e-35 154.5 301 32.2
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 3.7e-28 131.0 209 41.6
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 7.3e-24 116.7 83 71.1
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 2.4e-19 101.7 108 51.9
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 3.2e-19 101.3 167 34.1
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 7.8e-18 96.7 93 55.9
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 1.0e-17 96.3 174 36.2
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 5.2e-14 84.0 199 35.7
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 4.9e-12 77.4 59 59.3
Pp3c17_9425 Physcomitrium patens HOM05D051217 ORTHO05D037335 1.1e-08 66.2 298 22.8
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 1.6e-07 62.4 151 33.1
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 1.4e-06 59.3 62 54.8


User provided reference genes

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