Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025504 Vanilla planifolia HOM05D000174 ORTHO05D001526 3.6e-105 385.2 232 100.0
HPP92_025531 Vanilla planifolia HOM05D000174 ORTHO05D001526 5.0e-99 364.8 232 96.1
HanXRQChr12g0374431 Helianthus annuus HOM05D000174 ORTHO05D001526 1.3e-14 84.3 106 40.6
C01p03620 Brassica napus HOM05D001927 ORTHO05D001972 5.0e-14 82.4 156 34.6
BolC1t00353H Brassica oleracea HOM05D000174 ORTHO05D001526 8.5e-14 81.6 156 34.0
ECA233G2259 Erigeron canadensis HOM05D000174 ORTHO05D001526 1.4e-13 80.9 121 37.2
FAN20G1232 Fragaria x ananassa HOM05D000174 ORTHO05D001526 1.4e-13 80.9 166 33.1
BraA01t00313Z Brassica rapa HOM05D000174 ORTHO05D001526 2.5e-13 80.1 156 34.6
CARHR243600 Cardamine hirsuta HOM05D000174 ORTHO05D001526 2.5e-13 80.1 115 40.0
TWI75G1586 Tripterygium wilfordii HOM05D000174 ORTHO05D001526 3.2e-13 79.7 187 30.5
Ah.01g023730 Amaranthus hybridus HOM05D000174 ORTHO05D001526 4.2e-13 79.3 160 42.5
Aa31LG2G14820 Aethionema arabicum HOM05D000174 ORTHO05D001526 5.5e-13 79.0 114 39.5
A01p03280 Brassica napus HOM05D000174 ORTHO05D001526 5.5e-13 79.0 156 34.6
AUR62033207 Chenopodium quinoa HOM05D000174 ORTHO05D001526 7.2e-13 78.6 146 42.5
AUR62033209 Chenopodium quinoa HOM05D000174 ORTHO05D001526 7.2e-13 78.6 146 42.5
Sp7g33060 Schrenkiella parvula HOM05D000174 ORTHO05D001526 7.2e-13 78.6 116 36.2
Thhalv10025912m.g Eutrema salsugineum HOM05D000174 ORTHO05D001526 1.2e-12 77.8 159 32.7
FAN15G2497 Fragaria x ananassa HOM05D000174 ORTHO05D001526 1.6e-12 77.4 166 33.7
RcHm_v2.0_Chr6g0280711 Rosa chinensis HOM05D000174 ORTHO05D001526 1.6e-12 77.4 176 31.8
BcaNung02386 Brassica carinata HOM05D000174 ORTHO05D001526 2.1e-12 77.0 159 32.1
C07p61070 Brassica napus HOM05D000174 ORTHO05D001526 2.1e-12 77.0 159 32.1
BolC7t46532H Brassica oleracea HOM05D000174 ORTHO05D001526 2.1e-12 77.0 159 32.1
Carub.0003s3112 Capsella rubella HOM05D000174 ORTHO05D001526 2.1e-12 77.0 155 32.9
AT2G17180 Arabidopsis thaliana HOM05D000174 ORTHO05D001526 2.7e-12 76.6 172 34.3
A03p63500 Brassica napus HOM05D000174 ORTHO05D001526 2.7e-12 76.6 120 35.8
BraA03t15420Z Brassica rapa HOM05D000174 ORTHO05D001526 2.7e-12 76.6 120 35.8
Sed0016743 Sechium edule HOM05D000174 ORTHO05D001526 2.7e-12 76.6 107 40.2
unitig_578.g16756 Utricularia gibba HOM05D000174 ORTHO05D001526 2.7e-12 76.6 154 29.2
AL7G15890 Arabidopsis lyrata HOM05D000174 ORTHO05D001526 3.6e-12 76.3 114 36.8
arahy.Tifrunner.gnm1.ann1.PC1F1T Arachis hypogaea HOM05D000174 ORTHO05D001526 3.6e-12 76.3 125 36.8
EL10Ac9g21244 Beta vulgaris HOM05D000174 ORTHO05D001526 3.6e-12 76.3 109 44.0
Glyma.02G311100 Glycine max HOM05D000174 ORTHO05D001526 3.6e-12 76.3 138 32.6
Lj9P406T21 Lonicera japonica HOM05D000174 ORTHO05D001526 4.7e-12 75.9 110 37.3
TWI79G0030 Tripterygium wilfordii HOM05D000174 ORTHO05D001526 4.7e-12 75.9 126 32.5
FvH4_2g16630 Fragaria vesca HOM05D000174 ORTHO05D001526 6.1e-12 75.5 170 32.9
FAN24G2331 Fragaria x ananassa HOM05D000174 ORTHO05D001526 6.1e-12 75.5 170 32.9
Sc08g0002310 Simmondsia chinensis HOM05D000174 ORTHO05D001526 6.1e-12 75.5 116 37.1
arahy.Tifrunner.gnm1.ann1.DV6FW6 Arachis hypogaea HOM05D000174 ORTHO05D001526 7.9e-12 75.1 164 32.3
BcaNung00612 Brassica carinata HOM05D000174 ORTHO05D001526 7.9e-12 75.1 157 31.8
ECA246G3372 Erigeron canadensis HOM05D000174 ORTHO05D001526 7.9e-12 75.1 129 34.9
Gohir.D02G231400 Gossypium hirsutum HOM05D000174 ORTHO05D001526 7.9e-12 75.1 117 36.8
Gorai.005G259000 Gossypium raimondii HOM05D000174 ORTHO05D001526 7.9e-12 75.1 117 36.8
Gohir.A03G209700 Gossypium hirsutum HOM05D000174 ORTHO05D001526 1.0e-11 74.7 117 36.8
ATR0661G271 Amborella trichopoda HOM05D000174 ORTHO05D001526 1.8e-11 73.9 136 37.5
FAN27G0184 Fragaria x ananassa HOM05D000174 ORTHO05D001526 1.8e-11 73.9 170 32.9
Lj5P172T80 Lonicera japonica HOM05D000174 ORTHO05D001526 1.8e-11 73.9 115 37.4
Lalb_Chr22g0352391 Lupinus albus HOM05D000174 ORTHO05D001526 1.8e-11 73.9 129 36.4
Lalb_Chr22g0352401 Lupinus albus HOM05D000174 ORTHO05D001526 1.8e-11 73.9 129 36.4
Duzib248G0614 Durio zibethinus HOM05D000174 ORTHO05D001526 3.0e-11 73.2 145 33.8
Thhalv10023020m.g Eutrema salsugineum HOM05D000174 ORTHO05D001526 3.0e-11 73.2 111 37.8
Phvul.011G008400 Phaseolus vulgaris HOM05D000174 ORTHO05D001526 3.9e-11 72.8 121 47.1
PGSC0003DMG401000796 Solanum tuberosum HOM05D000174 ORTHO05D001526 3.9e-11 72.8 135 34.8
TWI31G0140 Tripterygium wilfordii HOM05D000174 ORTHO05D001526 3.9e-11 72.8 181 27.6
AT4G35280 Arabidopsis thaliana HOM05D000174 ORTHO05D001526 5.1e-11 72.4 185 30.3
Sed0014639 Sechium edule HOM05D000174 ORTHO05D001526 5.1e-11 72.4 134 34.3
AL3G50040 Arabidopsis lyrata HOM05D000174 ORTHO05D001526 1.1e-10 71.2 160 33.1
Cc10_g04030 Coffea canephora HOM05D000174 ORTHO05D001526 1.1e-10 71.2 141 31.2
Duzib052G0399 Durio zibethinus HOM05D000174 ORTHO05D001526 2.0e-10 70.5 131 33.6
MELO3C013258.2 Cucumis melo HOM05D000174 ORTHO05D001526 2.6e-10 70.1 201 28.9
MD05G1134500 Malus domestica HOM05D000174 ORTHO05D001526 2.6e-10 70.1 142 31.7
Manes.09G006400 Manihot esculenta HOM05D000174 ORTHO05D001526 2.6e-10 70.1 199 30.7
Medtr5g099040 Medicago truncatula HOM05D000174 ORTHO05D001526 2.6e-10 70.1 127 45.7
Oeu015527.1 Olea europaea HOM05D000174 ORTHO05D001526 2.6e-10 70.1 149 29.5
Oeu015529.1 Olea europaea HOM05D000174 ORTHO05D001526 2.6e-10 70.1 149 29.5
Rhsim05G0047500 Rhododendron simsii HOM05D000174 ORTHO05D001526 2.6e-10 70.1 168 33.3
RhsimUnG0141900 Rhododendron simsii HOM05D000174 ORTHO05D001526 2.6e-10 70.1 168 33.3
MD10G1139600 Malus domestica HOM05D000174 ORTHO05D001526 3.3e-10 69.7 141 31.9
Medtr5g062300 Medicago truncatula HOM05D000174 ORTHO05D001526 3.3e-10 69.7 131 42.7
Thecc.02G044700 Theobroma cacao HOM05D000174 ORTHO05D001526 3.3e-10 69.7 200 27.5
CiPaw.06G116500 Carya illinoinensis HOM05D000174 ORTHO05D001526 4.4e-10 69.3 187 27.8
Duzib132G0848 Durio zibethinus HOM05D000174 ORTHO05D001526 4.4e-10 69.3 131 34.4
CDE04G0195 Ceratophyllum demersum HOM05D001852 ORTHO05D001989 5.7e-10 68.9 178 28.7
GSVIVG01037364001 Vitis vinifera HOM05D000174 ORTHO05D001526 5.7e-10 68.9 104 36.5
PSO761G0216 Papaver somniferum HOM05D000174 ORTHO05D001526 7.4e-10 68.6 105 35.2
ClCG02G003500 Citrullus lanatus HOM05D000174 ORTHO05D001526 1.7e-09 67.4 119 33.6
Manes.04G008800 Manihot esculenta HOM05D000174 ORTHO05D001526 1.7e-09 67.4 286 26.9
PSO478G0578 Papaver somniferum HOM05D000174 ORTHO05D001526 1.7e-09 67.4 184 29.3
PGSC0003DMG400038709 Solanum tuberosum HOM05D000174 ORTHO05D001526 1.7e-09 67.4 194 28.9
COL.COLO4_17932 Corchorus olitorius HOM05D000174 ORTHO05D001526 2.2e-09 67.0 187 31.0
HanXRQChr17g0543991 Helianthus annuus HOM05D000174 ORTHO05D001526 2.2e-09 67.0 140 40.0
QL11p055621 Quercus lobata HOM05D000174 ORTHO05D001526 2.2e-09 67.0 198 30.3
QL11p055917 Quercus lobata HOM05D000174 ORTHO05D001526 2.2e-09 67.0 198 30.3
TAR625G1147 Trochodendron aralioides HOM05D000174 ORTHO05D001526 2.2e-09 67.0 191 29.3
Cpa.g.sc20.205 Carica papaya HOM05D000174 ORTHO05D001526 2.8e-09 66.6 197 27.9
Manes.08G058500 Manihot esculenta HOM05D000174 ORTHO05D001526 2.8e-09 66.6 185 28.1
Oeu051846.1 Olea europaea HOM05D001927 ORTHO05D001972 2.8e-09 66.6 156 30.1
CDE02G3608 Ceratophyllum demersum HOM05D000174 ORTHO05D001526 3.7e-09 66.2 180 28.3
Ciclev10030233m.g Citrus clementina HOM05D000174 ORTHO05D001526 3.7e-09 66.2 184 28.3
Gorai.002G206600 Gossypium raimondii HOM05D000174 ORTHO05D001526 3.7e-09 66.2 128 32.8
GSVIVG01037363001 Vitis vinifera HOM05D000174 ORTHO05D001526 3.7e-09 66.2 120 30.8
Lsat_1_v5_gn_3_48800 Lactuca sativa HOM05D000174 ORTHO05D001526 4.8e-09 65.9 120 44.2
Os06g0727000 Oryza sativa ssp. japonica HOM05D000174 ORTHO05D001526 4.8e-09 65.9 120 35.8
Nn6g31718 Nelumbo nucifera HOM05D000174 ORTHO05D001526 6.3e-09 65.5 175 30.3
CsaV3_7G001810 Cucumis sativus L. HOM05D000174 ORTHO05D001526 8.2e-09 65.1 201 28.4
Gohir.D01G166100 Gossypium hirsutum HOM05D000174 ORTHO05D001526 8.2e-09 65.1 128 33.6
Solyc06g060480.1 Solanum lycopersicum HOM05D000174 ORTHO05D001526 8.2e-09 65.1 146 29.5
SGA_v2.0_scaffold98G29296 Striga asiatica HOM05D000174 ORTHO05D001526 8.2e-09 65.1 132 45.5
CANSAT56G1055 Cannabis sativa HOM05D000174 ORTHO05D001526 1.1e-08 64.7 163 28.8
vmacro17301 Vaccinium macrocarpon HOM05D000174 ORTHO05D001526 1.1e-08 64.7 139 30.9
Hma1.2p1_0032F.1_g018820 Hydrangea macrophylla HOM05D000174 ORTHO05D001526 1.4e-08 64.3 143 31.5
TPR.G18627 Trifolium pratense HOM05D000174 ORTHO05D001526 1.4e-08 64.3 139 30.9
GSVIVG01023887001 Vitis vinifera HOM05D000174 ORTHO05D001526 1.4e-08 64.3 130 33.8
Peaxi162Scf00263g00147 Petunia axillaris HOM05D000174 ORTHO05D001526 1.8e-08 63.9 132 29.5
PGR042G3277 Punica granatum HOM05D000174 ORTHO05D001526 1.8e-08 63.9 212 28.3
Sopen06g020600 Solanum pennellii HOM05D000174 ORTHO05D001526 1.8e-08 63.9 175 27.4
THA.LOC104819687 Tarenaya hassleriana HOM05D000174 ORTHO05D001526 1.8e-08 63.9 149 30.2
Zm00001eb199290 Zea mays HOM05D000174 ORTHO05D001526 1.8e-08 63.9 157 29.3
CANSAT56G2339 Cannabis sativa HOM05D000174 ORTHO05D001526 2.4e-08 63.5 183 27.3
DCAR_006286 Daucus carota HOM05D000174 ORTHO05D001526 2.4e-08 63.5 192 29.7
Eucgr.I01518 Eucalyptus grandis HOM05D000174 ORTHO05D001526 2.4e-08 63.5 164 26.2
Hma1.2p1_0032F.1_g018690 Hydrangea macrophylla HOM05D000174 ORTHO05D001526 2.4e-08 63.5 147 30.6
Haze_02015 Corylus avellana HOM05D000174 ORTHO05D001526 3.1e-08 63.2 283 26.1
CSS0027823 Camellia sinensis var. sinensis HOM05D000174 ORTHO05D001526 4.1e-08 62.8 143 28.7
ClCG02G009940 Citrullus lanatus HOM05D000174 ORTHO05D001526 4.1e-08 62.8 75 41.3
Gohir.A01G175000 Gossypium hirsutum HOM05D000174 ORTHO05D001526 4.1e-08 62.8 128 31.2
Migut.N01353 Erythranthe guttata HOM05D000174 ORTHO05D001526 5.3e-08 62.4 127 38.6
Potri.009G166200 Populus trichocarpa HOM05D000174 ORTHO05D001526 7.0e-08 62.0 291 25.1
Dinv41879 Davidia involucrata HOM05D000174 ORTHO05D001526 9.1e-08 61.6 146 30.8
PSO017G6757 Papaver somniferum HOM05D000174 ORTHO05D001526 9.1e-08 61.6 185 28.6
Psat2g023640 Pisum sativum HOM05D000174 ORTHO05D001526 1.2e-07 61.2 150 29.3
Sabra04G0138600 Salix brachista HOM05D000174 ORTHO05D001526 1.2e-07 61.2 194 27.3
BcaB03g16465 Brassica carinata HOM05D000174 ORTHO05D001526 1.5e-07 60.8 95 36.8
Carub.0007s0502 Capsella rubella HOM05D000174 ORTHO05D001526 1.5e-07 60.8 155 34.2
Nitab4.5_0000032g0420 Nicotiana tabacum HOM05D000174 ORTHO05D001526 1.5e-07 60.8 151 28.5
Psat2g001240 Pisum sativum HOM05D000174 ORTHO05D001526 2.6e-07 60.1 155 27.7
Actinidia20568 Actinidia chinensis HOM05D000174 ORTHO05D001526 3.4e-07 59.7 137 29.9
Os02g0293900 Oryza sativa ssp. japonica HOM05D000174 ORTHO05D001526 3.4e-07 59.7 144 32.6
Rhsim11G0197100 Rhododendron simsii HOM05D000174 ORTHO05D001526 5.9e-07 58.9 145 26.9
Sabra15G0041100 Salix brachista HOM05D000174 ORTHO05D001526 5.9e-07 58.9 31 67.7
Lsat_1_v5_gn_8_121041 Lactuca sativa HOM05D000174 ORTHO05D001526 7.7e-07 58.5 166 33.1
Oeu052027.2 Olea europaea HOM05D000784 ORTHO05D000116 1.0e-06 58.2 34 58.8
Pp3c22_2200 Physcomitrium patens HOM05D000174 ORTHO05D001526 1.7e-06 57.4 43 55.8
CAN.G62.50 Capsicum annuum HOM05D000174 ORTHO05D001526 2.2e-06 57.0 175 25.7
Pp3c19_21390 Physcomitrium patens HOM05D000174 ORTHO05D001526 2.2e-06 57.0 43 55.8
Pp3c18_22010 Physcomitrium patens HOM05D000174 ORTHO05D001526 2.9e-06 56.6 34 61.8
Rhsim06G0235100 Rhododendron simsii HOM05D000174 ORTHO05D000630 2.9e-06 56.6 66 37.9
SEGI_02862 Sequoiadendron giganteum HOM05D000174 ORTHO05D001526 2.9e-06 56.6 33 63.6
SGA_v2.0_scaffold7G03548 Striga asiatica HOM05D008543 ORTHO05D000630 2.9e-06 56.6 31 61.3
unitig_52.g17363 Utricularia gibba HOM05D000174 ORTHO05D001526 2.9e-06 56.6 31 67.7
Zm00001eb033660 Zea mays HOM05D000174 ORTHO05D001526 2.9e-06 56.6 43 53.5
HPP92_020708 Vanilla planifolia HOM05D000174 ORTHO05D001526 3.8e-06 56.2 37 56.8
CiPaw.07G003700 Carya illinoinensis HOM05D008569 ORTHO05D010111 5.0e-06 55.8 75 40.0
Manes.02G113100 Manihot esculenta HOM05D008569 ORTHO05D010111 5.0e-06 55.8 35 60.0
PGR142G1089 Punica granatum HOM05D000174 ORTHO05D001526 5.0e-06 55.8 32 65.6
THA.LOC104817725 Tarenaya hassleriana HOM05D000174 ORTHO05D000630 5.0e-06 55.8 43 51.2
Atru.chr5.3548 Acer truncatum HOM05D000174 ORTHO05D001526 6.5e-06 55.5 162 36.4
Aqoxy6G01686 Aquilegia oxysepala HOM05D000174 ORTHO05D001526 6.5e-06 55.5 40 55.0
PSO210G1674 Papaver somniferum HOM05D000174 ORTHO05D001526 6.5e-06 55.5 137 29.2
Pp3c21_440 Physcomitrium patens HOM05D000174 ORTHO05D001526 6.5e-06 55.5 40 55.0
AUR62027124 Chenopodium quinoa HOM05D000174 ORTHO05D001526 8.5e-06 55.1 96 49.0
Potri.005G100300 Populus trichocarpa HOM05D008569 ORTHO05D010111 8.5e-06 55.1 38 55.3
Sabra05G0082900 Salix brachista HOM05D008569 ORTHO05D010111 8.5e-06 55.1 38 55.3


User provided reference genes

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