Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 3.8e-55 218.0 116 100.0
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 1.4e-54 216.1 116 99.1
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 1.2e-48 196.4 116 88.8
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 3.4e-48 194.9 116 85.3
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 7.7e-48 193.7 116 87.1
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 1.0e-47 193.4 117 87.2
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 1.0e-47 193.4 117 87.2
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.0e-47 193.4 117 87.2
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 1.3e-47 193.0 117 87.2
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 1.3e-47 193.0 113 87.6
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 1.3e-47 193.0 116 85.3
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.7e-47 192.6 116 83.6
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 3.8e-47 191.4 118 85.6
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 3.8e-47 191.4 115 84.3
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 3.8e-47 191.4 116 86.2
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 5.0e-47 191.0 116 85.3
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 6.5e-47 190.7 113 86.7
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 6.5e-47 190.7 117 86.3
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 6.5e-47 190.7 116 84.5
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 8.5e-47 190.3 115 84.3
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 8.5e-47 190.3 113 86.7
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 8.5e-47 190.3 117 86.3
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 8.5e-47 190.3 116 85.3
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.1e-46 189.9 116 84.5
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 1.1e-46 189.9 116 83.6
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 1.1e-46 189.9 116 84.5
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.4e-46 189.5 113 86.7
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 1.4e-46 189.5 116 83.6
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.4e-46 189.5 116 85.3
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.9e-46 189.1 116 84.5
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 1.9e-46 189.1 116 85.3
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.9e-46 189.1 116 84.5
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.9e-46 189.1 116 84.5
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 1.9e-46 189.1 113 86.7
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 2.5e-46 188.7 115 84.3
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 3.2e-46 188.3 115 84.3
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 3.2e-46 188.3 113 85.0
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 3.2e-46 188.3 117 84.6
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 3.2e-46 188.3 116 84.5
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 3.2e-46 188.3 116 82.8
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 4.2e-46 188.0 113 84.1
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 4.2e-46 188.0 113 84.1
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 4.2e-46 188.0 116 83.6
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 4.2e-46 188.0 118 84.7
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 4.2e-46 188.0 113 85.0
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 4.2e-46 188.0 116 84.5
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 5.5e-46 187.6 115 82.6
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 5.5e-46 187.6 116 84.5
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 5.5e-46 187.6 116 84.5
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.5e-46 187.6 118 83.9
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 5.5e-46 187.6 112 85.7
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 5.5e-46 187.6 113 85.0
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 7.2e-46 187.2 116 83.6
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 7.2e-46 187.2 116 83.6
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 7.2e-46 187.2 115 82.6
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 7.2e-46 187.2 116 83.6
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 9.4e-46 186.8 116 83.6
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 9.4e-46 186.8 116 83.6
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 9.4e-46 186.8 117 82.9
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 9.4e-46 186.8 113 85.8
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 9.4e-46 186.8 116 84.5
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 1.2e-45 186.4 116 82.8
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.2e-45 186.4 115 81.7
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 1.2e-45 186.4 113 85.8
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.2e-45 186.4 117 84.6
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.2e-45 186.4 117 84.6
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 1.2e-45 186.4 116 81.9
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 1.2e-45 186.4 113 85.8
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 1.2e-45 186.4 116 83.6
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 1.6e-45 186.0 116 82.8
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 1.6e-45 186.0 116 82.8
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.6e-45 186.0 116 82.8
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 1.6e-45 186.0 116 82.8
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 2.1e-45 185.7 116 82.8
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 2.1e-45 185.7 115 83.5
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 2.1e-45 185.7 113 84.1
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 2.1e-45 185.7 113 84.1
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 2.1e-45 185.7 113 85.8
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 2.7e-45 185.3 116 83.6
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 2.7e-45 185.3 115 80.9
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 2.7e-45 185.3 115 80.9
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 2.7e-45 185.3 116 82.8
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 2.7e-45 185.3 113 84.1
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 2.7e-45 185.3 116 81.9
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 2.7e-45 185.3 116 81.9
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 3.6e-45 184.9 117 82.9
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 3.6e-45 184.9 113 85.0
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 3.6e-45 184.9 113 85.0
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 3.6e-45 184.9 113 85.0
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 6.1e-45 184.1 111 82.9
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 6.1e-45 184.1 113 85.8
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 6.1e-45 184.1 115 83.5
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 6.1e-45 184.1 115 83.5
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 7.9e-45 183.7 113 85.0
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 7.9e-45 183.7 113 82.3
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 1.0e-44 183.3 115 84.3
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 1.0e-44 183.3 113 82.3
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 1.0e-44 183.3 112 83.9
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.4e-44 183.0 116 81.9
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 1.4e-44 183.0 116 79.3
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 1.4e-44 183.0 113 84.1
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 2.3e-44 182.2 116 81.0
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 2.3e-44 182.2 114 83.3
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 3.0e-44 181.8 113 84.1
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 3.0e-44 181.8 113 84.1
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 3.0e-44 181.8 113 84.1
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 3.0e-44 181.8 116 79.3
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 3.9e-44 181.4 113 84.1
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 3.9e-44 181.4 113 84.1
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 6.7e-44 180.6 116 80.2
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 8.8e-44 180.3 116 79.3
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 2.5e-43 178.7 109 83.5
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 2.5e-43 178.7 110 80.9
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 3.3e-43 178.3 111 80.2
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 4.3e-43 177.9 113 81.4
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 7.4e-43 177.2 113 83.2
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 7.4e-43 177.2 115 79.1
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 1.3e-42 176.4 152 65.8
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 1.3e-42 176.4 117 81.2
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 3.7e-42 174.9 116 77.6
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 4.8e-42 174.5 108 83.3
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 4.8e-42 174.5 109 81.7
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 1.4e-41 172.9 105 82.9
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 1.4e-41 172.9 126 74.6
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 1.4e-41 172.9 116 76.7
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 3.1e-41 171.8 113 77.9
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 6.9e-41 170.6 110 79.1
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 6.9e-41 170.6 116 75.0
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 2.9e-39 165.2 113 71.7
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 1.4e-38 162.9 109 75.2
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.9e-38 162.5 89 92.1
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 4.7e-37 157.9 88 89.8
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 4.7e-37 157.9 92 81.5
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 9.7e-35 150.2 200 48.5
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 3.1e-33 145.2 117 72.6
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 1.5e-32 142.9 72 95.8
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 3.5e-32 141.7 81 87.7
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 1.3e-31 139.8 82 86.6
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 2.2e-31 139.0 88 83.0
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 2.5e-30 135.6 88 80.7
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.6e-29 132.9 89 77.5
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 2.7e-29 132.1 89 75.3
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.7e-29 132.1 102 70.6
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 4.7e-29 131.3 67 95.5
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 8.0e-29 130.6 88 75.0
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 2.0e-27 125.9 105 68.6
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 2.0e-27 125.9 105 68.6
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 3.3e-27 125.2 85 77.6
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 8.2e-26 120.6 109 56.9
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 1.1e-25 120.2 105 53.3
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 1.1e-22 110.2 73 80.8
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 2.5e-22 109.0 73 79.5
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 6.1e-21 104.4 83 68.7
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.0e-20 102.1 72 70.8
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 2.0e-19 99.4 86 62.8
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 2.2e-18 95.9 107 59.8
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 3.5e-16 88.6 71 60.6
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 2.2e-15 85.9 51 84.3
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 5.9e-08 61.2 51 66.7
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 3.8e-07 58.5 56 58.9
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 1.1e-06 57.0 46 67.4


User provided reference genes

Program Settings