Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 3.2e-144 515.0 245 100.0
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.4e-136 489.6 232 100.0
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 3.9e-94 348.6 226 68.6
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 1.0e-89 334.0 225 68.0
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 8.5e-89 330.9 226 68.1
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 5.5e-88 328.2 226 66.8
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 5.5e-88 328.2 225 67.6
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 5.5e-88 328.2 226 69.0
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 7.2e-88 327.8 226 66.8
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 4.6e-87 325.1 227 66.5
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 1.0e-86 323.9 226 67.3
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.4e-86 323.6 206 72.3
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 2.3e-86 322.8 244 61.9
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 3.0e-86 322.4 212 70.3
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 8.8e-86 320.9 225 67.1
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 2.0e-85 319.7 225 67.6
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 2.0e-85 319.7 225 65.8
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 2.0e-85 319.7 226 65.5
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 2.6e-85 319.3 226 66.8
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 3.3e-85 318.9 226 65.9
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.3e-85 318.9 226 65.9
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 4.4e-85 318.5 225 65.8
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 5.7e-85 318.2 225 66.2
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 5.7e-85 318.2 226 65.5
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 7.4e-85 317.8 225 63.6
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 2.2e-84 316.2 225 63.6
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.2e-84 316.2 226 65.5
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.2e-84 316.2 226 65.5
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 2.2e-84 316.2 226 64.2
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 2.8e-84 315.8 227 64.8
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 2.8e-84 315.8 226 65.9
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 3.7e-84 315.5 225 65.8
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 3.7e-84 315.5 226 65.9
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 4.8e-84 315.1 226 62.4
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 6.3e-84 314.7 226 67.3
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 8.2e-84 314.3 226 65.5
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 8.2e-84 314.3 226 64.6
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 1.1e-83 313.9 225 65.3
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 1.4e-83 313.5 227 65.2
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 1.8e-83 313.2 227 65.2
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 2.4e-83 312.8 223 65.5
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 2.4e-83 312.8 225 65.3
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 2.4e-83 312.8 226 65.5
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 2.4e-83 312.8 226 65.5
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 2.4e-83 312.8 226 64.6
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.4e-83 312.8 226 63.7
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 2.4e-83 312.8 226 65.0
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 2.4e-83 312.8 226 62.8
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 3.1e-83 312.4 226 64.6
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 3.1e-83 312.4 281 55.5
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 4.1e-83 312.0 226 63.7
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.1e-83 312.0 227 63.9
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 6.9e-83 311.2 225 63.1
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 6.9e-83 311.2 226 62.8
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 6.9e-83 311.2 225 65.3
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 6.9e-83 311.2 225 64.9
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 6.9e-83 311.2 225 64.9
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 9.1e-83 310.8 252 59.1
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 1.2e-82 310.5 225 64.9
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.2e-82 310.5 227 63.4
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 2.0e-82 309.7 233 62.7
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 3.4e-82 308.9 226 64.2
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.5e-82 308.5 240 61.7
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.5e-82 308.5 240 61.7
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 4.5e-82 308.5 226 64.6
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 5.9e-82 308.1 226 64.2
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.0e-81 307.4 226 60.2
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.0e-81 307.4 226 60.2
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 2.2e-81 306.2 225 64.0
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 2.2e-81 306.2 226 61.9
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 2.9e-81 305.8 233 61.4
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 3.8e-81 305.4 226 62.8
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 5.0e-81 305.1 226 61.5
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 6.5e-81 304.7 226 63.3
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 8.5e-81 304.3 227 63.4
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 8.5e-81 304.3 227 63.4
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.1e-80 303.9 226 63.3
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.9e-80 303.1 225 64.4
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 2.5e-80 302.8 227 62.1
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 3.2e-80 302.4 232 61.6
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 4.2e-80 302.0 213 64.3
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 9.4e-80 300.8 258 58.1
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 9.4e-80 300.8 226 62.8
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.2e-79 300.4 232 58.2
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 2.1e-79 299.7 226 63.7
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 3.6e-79 298.9 230 63.0
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 6.1e-79 298.1 225 59.1
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 7.9e-79 297.7 226 62.4
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 1.0e-78 297.4 226 62.4
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 1.4e-78 297.0 283 52.7
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 2.3e-78 296.2 226 61.1
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 3.9e-78 295.4 257 56.8
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 5.2e-78 295.0 227 61.7
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 8.8e-78 294.3 226 63.3
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 2.6e-77 292.7 227 61.2
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 4.4e-77 292.0 228 60.1
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 1.7e-76 290.0 227 61.2
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.2e-76 289.7 274 54.4
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 2.8e-76 289.3 231 61.0
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 6.3e-76 288.1 196 68.9
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 3.1e-75 285.8 210 65.2
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 2.0e-74 283.1 196 64.3
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 4.5e-74 282.0 226 61.1
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 1.7e-73 280.0 211 62.1
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 1.7e-73 280.0 211 62.1
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 5.0e-73 278.5 225 58.7
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 2.5e-72 276.2 236 57.6
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.7e-71 272.7 226 55.3
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 8.0e-71 271.2 210 58.6
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.0e-70 270.8 226 60.2
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 2.3e-70 269.6 209 61.7
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.6e-69 266.2 225 56.4
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.3e-68 263.8 233 53.6
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 1.7e-68 263.5 253 55.7
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.7e-68 263.5 225 56.9
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 3.7e-68 262.3 178 69.7
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 9.1e-67 257.7 238 53.4
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 3.8e-65 252.3 297 44.4
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 5.0e-65 251.9 220 55.5
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 3.7e-60 235.7 192 59.9
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 2.4e-59 233.0 231 48.1
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.7e-58 229.6 201 55.2
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 5.9e-58 228.4 210 50.0
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 5.9e-58 228.4 210 50.0
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 1.0e-57 227.6 168 63.1
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.7e-57 226.9 208 54.8
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 2.1e-55 219.9 145 69.0
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 8.8e-54 214.5 229 45.0
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 4.4e-53 212.2 145 69.0
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 1.3e-52 210.7 211 51.7
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 5.4e-51 205.3 136 64.0
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 1.6e-50 203.8 151 62.9
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.4e-46 190.7 161 56.5
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 3.4e-45 186.0 157 56.7
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.6e-42 177.2 177 52.0
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.6e-42 175.6 209 45.0
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 5.6e-40 168.7 255 41.6
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 1.6e-39 167.2 216 38.9
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 6.2e-39 165.2 116 64.7
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.6e-34 150.6 189 45.5
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 3.0e-33 146.4 105 61.9
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 2.2e-28 130.2 111 55.0
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.3e-25 120.9 74 77.0
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 3.4e-21 106.3 115 46.1
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 7.1e-19 98.6 88 54.5
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 2.7e-18 96.7 86 48.8
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 1.7e-17 94.0 106 43.4
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 1.9e-16 90.5 69 56.5
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.4e-14 84.3 57 63.2
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 1.3e-12 77.8 52 69.2
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 6.0e-10 68.9 95 43.2
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 1.9e-08 63.9 36 75.0
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 1.6e-07 60.8 69 52.2
AL7G26190 Arabidopsis lyrata HOM05D004727 ORTHO05D079975 8.1e-07 58.5 38 68.4
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 9.0e-06 55.1 51 47.1


User provided reference genes

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