Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025393 Vanilla planifolia HOM05D003460 ORTHO05D004277 2.1e-155 552.4 290 100.0
Zm00001eb404370 Zea mays HOM05D003460 ORTHO05D004277 1.4e-53 214.2 472 33.7
Os07g0648300 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 1.2e-52 211.1 472 32.8
Zm00001eb000520 Zea mays HOM05D003460 ORTHO05D004277 2.2e-51 206.8 474 33.5
Nn1g01533 Nelumbo nucifera HOM05D003460 ORTHO05D004277 1.1e-50 204.5 482 32.2
Aqoxy7G00308 Aquilegia oxysepala HOM05D003460 ORTHO05D004277 3.0e-48 196.4 473 32.3
Nn6g33423 Nelumbo nucifera HOM05D003460 ORTHO05D004277 1.9e-47 193.7 472 31.8
Manes.05G034300 Manihot esculenta HOM05D003460 ORTHO05D004277 1.0e-45 188.0 479 32.4
Os10g0550100 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 2.3e-45 186.8 456 33.8
Ciclev10018441m.g Citrus clementina HOM05D003460 ORTHO05D004277 2.6e-44 183.3 482 31.1
GSVIVG01026933001 Vitis vinifera HOM05D003460 ORTHO05D004277 5.8e-44 182.2 477 30.8
Dinv43815 Davidia involucrata HOM05D003460 ORTHO05D004277 7.5e-44 181.8 439 32.8
TAR629G2967 Trochodendron aralioides HOM05D003460 ORTHO05D004277 7.5e-44 181.8 482 30.1
TAR636G2440 Trochodendron aralioides HOM05D003460 ORTHO05D004277 2.9e-43 179.9 480 30.2
Haze_15503 Corylus avellana HOM05D003460 ORTHO05D004277 6.4e-43 178.7 441 32.4
RcHm_v2.0_Chr1g0355261 Rosa chinensis HOM05D003460 ORTHO05D004277 1.2e-41 174.5 481 28.9
TWI59G0279 Tripterygium wilfordii HOM05D003460 ORTHO05D004277 7.8e-41 171.8 478 30.5
Glyma.09G259400 Glycine max HOM05D003460 ORTHO05D004277 1.7e-40 170.6 472 29.4
FvH4_7g14270 Fragaria vesca HOM05D003460 ORTHO05D004277 5.0e-40 169.1 479 28.8
Ah.05g180610 Amaranthus hybridus HOM05D003460 ORTHO05D004277 6.6e-40 168.7 478 30.3
EL10Ac1g00416 Beta vulgaris HOM05D003460 ORTHO05D004277 1.1e-39 167.9 482 30.1
Gohir.A11G088900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 1.1e-39 167.9 468 30.1
Potri.014G084500 Populus trichocarpa HOM05D003460 ORTHO05D004277 1.5e-39 167.5 479 28.8
Cfa003927 Carpinus fangiana HOM05D003460 ORTHO05D004277 1.9e-39 167.2 483 29.8
MD07G1137100 Malus domestica HOM05D003460 ORTHO05D004277 1.9e-39 167.2 479 28.4
FAN01G0910 Fragaria x ananassa HOM05D003460 ORTHO05D004277 2.5e-39 166.8 479 28.8
AUR62022565 Chenopodium quinoa HOM05D003460 ORTHO05D004277 3.3e-39 166.4 482 29.7
Gohir.D11G093200 Gossypium hirsutum HOM05D003460 ORTHO05D004277 3.3e-39 166.4 468 30.1
Gorai.007G099500 Gossypium raimondii HOM05D003460 ORTHO05D004277 3.3e-39 166.4 468 30.1
FAN06G0746 Fragaria x ananassa HOM05D003460 ORTHO05D004277 4.3e-39 166.0 479 28.6
MD01G1060600 Malus domestica HOM05D003460 ORTHO05D004277 4.3e-39 166.0 479 28.0
AUR62004357 Chenopodium quinoa HOM05D003460 ORTHO05D004277 7.3e-39 165.2 482 29.3
FAN06G4334 Fragaria x ananassa HOM05D003460 ORTHO05D004277 7.3e-39 165.2 477 28.7
Sc23g0002910 Simmondsia chinensis HOM05D003460 ORTHO05D004277 9.5e-39 164.9 473 30.2
Ca_07919_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 1.2e-38 164.5 477 28.5
Duzib133G1367 Durio zibethinus HOM05D003460 ORTHO05D004277 1.2e-38 164.5 468 31.2
ATR0680G344 Amborella trichopoda HOM05D003460 ORTHO05D004277 2.1e-38 163.7 481 29.9
ECA240G3092 Erigeron canadensis HOM05D003460 ORTHO05D004277 2.1e-38 163.7 481 31.4
FAN10G2005 Fragaria x ananassa HOM05D003460 ORTHO05D004277 2.8e-38 163.3 479 28.6
FAN10G1682 Fragaria x ananassa HOM05D003460 ORTHO05D004277 3.6e-38 162.9 479 28.6
Lalb_Chr04g0256941 Lupinus albus HOM05D003460 ORTHO05D004277 3.6e-38 162.9 476 28.6
Potri.002G159900 Populus trichocarpa HOM05D003460 ORTHO05D004277 3.6e-38 162.9 484 28.7
Glyma.18G232900 Glycine max HOM05D003460 ORTHO05D004277 6.2e-38 162.2 474 28.1
Ca_23633_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 1.1e-37 161.4 471 28.9
FAN03G0059 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.1e-37 161.4 479 28.6
Gohir.A12G108900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 1.4e-37 161.0 468 30.3
arahy.Tifrunner.gnm1.ann1.T9PB4Q Arachis hypogaea HOM05D003460 ORTHO05D004277 1.8e-37 160.6 465 28.8
Gohir.D12G111900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 1.8e-37 160.6 468 30.1
Gorai.008G121300 Gossypium raimondii HOM05D003460 ORTHO05D004277 1.8e-37 160.6 468 30.1
Medtr7g077700 Medicago truncatula HOM05D003460 ORTHO05D004277 1.8e-37 160.6 466 29.2
CSS0048858 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 4.0e-37 159.5 485 28.7
arahy.Tifrunner.gnm1.ann1.H3LZVP Arachis hypogaea HOM05D003460 ORTHO05D004277 1.2e-36 157.9 465 28.2
Glyma.03G009200 Glycine max HOM05D003460 ORTHO05D004277 1.5e-36 157.5 476 28.2
Medtr8g030800 Medicago truncatula HOM05D003460 ORTHO05D004277 1.5e-36 157.5 477 29.1
Hund27274 Selenicereus undatus HOM05D003460 ORTHO05D004277 2.6e-36 156.8 481 28.9
CSS0010662 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 3.4e-36 156.4 474 29.1
CANSAT56G1950 Cannabis sativa HOM05D003460 ORTHO05D004277 3.4e-36 156.4 483 28.6
Cc02_g38020 Coffea canephora HOM05D003460 ORTHO05D004277 4.4e-36 156.0 482 28.6
HanXRQChr03g0093461 Helianthus annuus HOM05D003460 ORTHO05D004277 5.8e-36 155.6 452 31.4
VMungo1383G3436 Vigna mungo HOM05D003460 ORTHO05D004277 5.8e-36 155.6 470 28.3
Lalb_Chr10g0096951 Lupinus albus HOM05D003460 ORTHO05D004277 7.5e-36 155.2 479 27.3
Nitab4.5_0000583g0090 Nicotiana tabacum HOM05D003460 ORTHO05D004277 9.8e-36 154.8 481 28.5
Sabra14G0061300 Salix brachista HOM05D003460 ORTHO05D004277 9.8e-36 154.8 500 26.8
Lj3g0003387 Lotus japonicus HOM05D003460 ORTHO05D004277 1.3e-35 154.5 465 28.6
Phvul.010G099000 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 1.3e-35 154.5 468 29.1
Thecc.01G359000 Theobroma cacao HOM05D003460 ORTHO05D004277 1.7e-35 154.1 477 28.7
Actinidia20904 Actinidia chinensis HOM05D003460 ORTHO05D004277 3.7e-35 152.9 473 29.8
QL08p048825 Quercus lobata HOM05D003460 ORTHO05D004277 3.7e-35 152.9 482 28.4
TPR.G8692 Trifolium pratense HOM05D003460 ORTHO05D004277 3.7e-35 152.9 472 28.4
Peaxi162Scf00020g00327 Petunia axillaris HOM05D003460 ORTHO05D004277 6.4e-35 152.1 480 27.7
Glyma.07G070700 Glycine max HOM05D003460 ORTHO05D004277 8.3e-35 151.8 475 28.8
HanXRQChr13g0426551 Helianthus annuus HOM05D003460 ORTHO05D004277 1.1e-34 151.4 469 31.1
CDE04G2266 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 1.4e-34 151.0 481 29.1
Lj7C512T7 Lonicera japonica HOM05D003460 ORTHO05D004277 1.9e-34 150.6 493 29.4
VMungo0331G1375 Vigna mungo HOM05D003460 ORTHO05D004277 1.9e-34 150.6 470 28.3
Lalb_Chr17g0339611 Lupinus albus HOM05D003460 ORTHO05D004277 5.4e-34 149.1 476 27.1
Sabra02G0126900 Salix brachista HOM05D003460 ORTHO05D004277 5.4e-34 149.1 490 27.8
Lj1g0005367 Lotus japonicus HOM05D003460 ORTHO05D004277 3.5e-33 146.4 477 27.3
Nitab4.5_0000885g0020 Nicotiana tabacum HOM05D003460 ORTHO05D004277 3.5e-33 146.4 478 27.8
Oeu052946.1 Olea europaea HOM05D003460 ORTHO05D004277 3.5e-33 146.4 481 28.1
Rhsim07G0015100 Rhododendron simsii HOM05D003460 ORTHO05D004277 6.0e-33 145.6 473 28.1
Manes.01G256801 Manihot esculenta HOM05D003460 ORTHO05D004277 1.7e-32 144.1 467 28.7
Psat3g108400 Pisum sativum HOM05D003460 ORTHO05D004277 2.3e-32 143.7 476 27.9
DCAR_008608 Daucus carota HOM05D003460 ORTHO05D004277 3.0e-32 143.3 479 28.8
Duzib268G1202 Durio zibethinus HOM05D003460 ORTHO05D004277 3.0e-32 143.3 469 28.4
Solyc01g094620.3 Solanum lycopersicum HOM05D003460 ORTHO05D004277 3.0e-32 143.3 481 27.4
Psat4g205160 Pisum sativum HOM05D003460 ORTHO05D004277 1.5e-31 141.0 418 29.9
CiPaw.02G030700 Carya illinoinensis HOM05D003460 ORTHO05D004277 1.9e-31 140.6 465 29.0
vmacro13290 Vaccinium macrocarpon HOM05D003460 ORTHO05D004277 1.9e-31 140.6 474 28.1
Sopen01g038430 Solanum pennellii HOM05D003460 ORTHO05D004277 2.5e-31 140.2 481 27.7
Sed0017726 Sechium edule HOM05D003460 ORTHO05D004277 2.1e-30 137.1 474 28.3
SalBow3G0963 Salvia bowleyana HOM05D003460 ORTHO05D004277 2.8e-30 136.7 475 28.6
SGA_v2.0_scaffold43G16414 Striga asiatica HOM05D003460 ORTHO05D004277 4.7e-30 136.0 473 28.1
CsaV3_3G008910 Cucumis sativus L. HOM05D003460 ORTHO05D004277 6.2e-30 135.6 482 28.0
Actinidia10010 Actinidia chinensis HOM05D003460 ORTHO05D004277 1.1e-29 134.8 474 28.5
SGA_v2.0_scaffold11G05665 Striga asiatica HOM05D003460 ORTHO05D004277 1.1e-29 134.8 472 28.6
ClCG05G001530 Citrullus lanatus HOM05D003460 ORTHO05D004277 1.4e-29 134.4 482 27.8
Sed0006269 Sechium edule HOM05D003460 ORTHO05D004277 3.1e-29 133.3 484 26.4
CAN.G78.79 Capsicum annuum HOM05D003460 ORTHO05D004277 5.2e-29 132.5 484 26.4
PGR042G0360 Punica granatum HOM05D003460 ORTHO05D004277 5.2e-29 132.5 481 26.6
Eucgr.E00136 Eucalyptus grandis HOM05D003460 ORTHO05D004277 2.6e-28 130.2 490 26.5
MSTRG.17267 Avicennia marina HOM05D003460 ORTHO05D004277 3.4e-28 129.8 479 26.9
TPR.G37789 Trifolium pratense HOM05D003460 ORTHO05D004277 4.4e-28 129.4 483 25.5
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 7.6e-28 128.6 462 27.5
PSO782G4956 Papaver somniferum HOM05D003460 ORTHO05D004277 7.6e-28 128.6 530 25.5
PSO063G5861 Papaver somniferum HOM05D003460 ORTHO05D004277 9.9e-28 128.3 522 25.5
Aa31LG5G530 Aethionema arabicum HOM05D003460 ORTHO05D004277 2.2e-27 127.1 484 28.1
Lsat_1_v5_gn_3_137161 Lactuca sativa HOM05D003460 ORTHO05D004277 2.9e-27 126.7 486 27.6
BcaB01g02164 Brassica carinata HOM05D003460 ORTHO05D004277 8.4e-27 125.2 484 27.3
Migut.N01446 Erythranthe guttata HOM05D003460 ORTHO05D004277 8.4e-27 125.2 477 27.5
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 8.4e-27 125.2 471 26.1
Prupe.2G170500 Prunus persica HOM05D003460 ORTHO05D004277 1.1e-26 124.8 191 35.6
A03p32180 Brassica napus HOM05D003460 ORTHO05D004277 3.2e-26 123.2 485 27.0
BraA03t12388Z Brassica rapa HOM05D003460 ORTHO05D004277 3.2e-26 123.2 485 27.0
BcaC01g06879 Brassica carinata HOM05D003460 ORTHO05D004277 5.4e-26 122.5 484 27.3
C03p39210 Brassica napus HOM05D003460 ORTHO05D004277 5.4e-26 122.5 484 27.3
BolC3t16192H Brassica oleracea HOM05D003460 ORTHO05D004277 5.4e-26 122.5 484 27.3
unitig_0.g1263 Utricularia gibba HOM05D003460 ORTHO05D004277 5.4e-26 122.5 490 26.9
Thhalv10028357m.g Eutrema salsugineum HOM05D003460 ORTHO05D004277 9.2e-26 121.7 482 26.6
Sp6g00490 Schrenkiella parvula HOM05D003460 ORTHO05D004277 2.1e-25 120.6 483 26.3
AL6G53010 Arabidopsis lyrata HOM05D003460 ORTHO05D004277 2.7e-25 120.2 484 26.4
AT4G00450 Arabidopsis thaliana HOM05D003460 ORTHO05D004277 2.7e-25 120.2 483 26.9
CiPaw.01G061200 Carya illinoinensis HOM05D003460 ORTHO05D004277 1.0e-24 118.2 122 49.2
Carub.0006s3681 Capsella rubella HOM05D003460 ORTHO05D004277 1.3e-24 117.9 484 26.2
CARHR248550 Cardamine hirsuta HOM05D003460 ORTHO05D004277 1.3e-24 117.9 482 26.8
SEGI_03490 Sequoiadendron giganteum HOM05D003460 ORTHO05D004277 1.7e-24 117.5 154 48.1
BcaB01g02251 Brassica carinata HOM05D003460 ORTHO05D004277 2.3e-24 117.1 485 26.8
MELO3C006111.2 Cucumis melo HOM05D003460 ORTHO05D004277 1.9e-23 114.0 466 26.4
Migut.O00143 Erythranthe guttata HOM05D003460 ORTHO05D004277 1.9e-23 114.0 463 26.1
Atru.chr5.495 Acer truncatum HOM05D003460 ORTHO05D004277 5.6e-23 112.5 157 45.2
Phvul.008G142400 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 5.6e-23 112.5 122 47.5
THA.LOC104825837 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 7.3e-23 112.1 483 27.1
BolC9t52974H Brassica oleracea HOM05D003460 ORTHO05D004277 9.6e-23 111.7 482 25.9
BcaC04g24169 Brassica carinata HOM05D003460 ORTHO05D004277 1.6e-22 110.9 482 25.9
C09p00390 Brassica napus HOM05D003460 ORTHO05D004277 1.6e-22 110.9 482 25.9
A09p00470 Brassica napus HOM05D003460 ORTHO05D004277 2.8e-22 110.2 490 26.1
BraA09t35713Z Brassica rapa HOM05D003460 ORTHO05D004277 4.7e-22 109.4 490 26.1
Aa31LG1G11050 Aethionema arabicum HOM05D003460 ORTHO05D004277 1.8e-21 107.5 458 26.4
SMO147G0395 Selaginella moellendorffii HOM05D003460 ORTHO05D004277 2.6e-20 103.6 147 44.9
unitig_61.g26386 Utricularia gibba HOM05D003460 ORTHO05D004277 7.6e-20 102.1 127 44.9
Pp3c8_17600 Physcomitrium patens HOM05D003460 ORTHO05D004277 1.7e-19 100.9 489 24.9
COL.COLO4_12713 Corchorus olitorius HOM05D003460 ORTHO05D004277 2.2e-19 100.5 158 43.0
Pp3c24_11620 Physcomitrium patens HOM05D003460 ORTHO05D004277 6.4e-19 99.0 153 43.8
SHI13447 Sapria himalayana HOM05D003460 ORTHO05D004277 6.4e-19 99.0 120 44.2
Mapoly0018s0023 Marchantia polymorpha HOM05D003460 ORTHO05D004277 1.4e-18 97.8 166 42.2
Atru.chr5.497 Acer truncatum HOM05D003460 ORTHO05D004277 1.2e-17 94.7 74 58.1
MapolyY_A0045 Marchantia polymorpha HOM05D003460 ORTHO05D004277 1.6e-17 94.4 170 40.0
THA.LOC104827725 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 2.7e-17 93.6 179 40.8
THA.LOC104801439 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 4.3e-15 86.3 254 31.9
TPR.G15040 Trifolium pratense HOM05D003460 ORTHO05D004277 4.8e-14 82.8 83 49.4
SHI13445 Sapria himalayana HOM05D003460 ORTHO05D004277 8.1e-14 82.0 139 38.1
PGSC0003DMG400000171 Solanum tuberosum HOM05D003460 ORTHO05D004277 1.8e-13 80.9 136 40.4
Psat4g193320 Pisum sativum HOM05D003460 ORTHO05D004277 4.9e-11 72.8 107 42.1
Dinv32483 Davidia involucrata HOM05D003460 ORTHO05D004277 5.4e-10 69.3 122 35.2
CBR_g44444 Chara braunii HOM05D003460 ORTHO05D004277 1.8e-08 64.3 172 30.2


User provided reference genes

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