Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 4.5e-39 164.1 80 100.0
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 5.0e-38 160.6 80 97.5
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 9.7e-18 93.2 67 65.7
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.3e-17 92.8 75 61.3
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 1.3e-17 92.8 67 64.2
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 3.7e-17 91.3 67 62.7
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 6.3e-17 90.5 65 61.5
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 6.3e-17 90.5 77 57.1
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 2.4e-16 88.6 78 55.1
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.4e-16 88.6 77 57.1
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.4e-16 88.6 77 57.1
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 2.4e-16 88.6 77 57.1
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 4.1e-16 87.8 63 63.5
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 5.3e-16 87.4 77 55.8
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 7.0e-16 87.0 70 58.6
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 9.1e-16 86.7 69 58.0
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 1.2e-15 86.3 63 60.3
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.2e-15 86.3 78 53.8
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 1.2e-15 86.3 76 57.9
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 4.5e-15 84.3 79 53.2
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 4.5e-15 84.3 66 56.1
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 5.9e-15 84.0 73 53.4
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 7.7e-15 83.6 78 51.3
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 7.7e-15 83.6 79 51.9
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.0e-14 83.2 67 50.7
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 1.0e-14 83.2 67 50.7
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 1.3e-14 82.8 67 55.2
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.7e-14 82.4 63 57.1
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 1.7e-14 82.4 66 56.1
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 1.7e-14 82.4 67 52.2
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 2.2e-14 82.0 81 51.9
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 2.9e-14 81.6 79 53.2
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 3.8e-14 81.3 77 53.2
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 5.0e-14 80.9 78 51.3
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 6.5e-14 80.5 68 55.9
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 6.5e-14 80.5 68 52.9
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 6.5e-14 80.5 67 59.7
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.1e-13 79.7 77 51.9
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.1e-13 79.7 77 51.9
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 1.1e-13 79.7 77 50.6
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 1.1e-13 79.7 77 50.6
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.1e-13 79.7 75 54.7
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 1.1e-13 79.7 64 54.7
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 2.5e-13 78.6 79 53.2
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 2.5e-13 78.6 92 44.6
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 2.5e-13 78.6 66 50.0
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 2.5e-13 78.6 65 52.3
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 3.2e-13 78.2 89 44.9
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 3.2e-13 78.2 65 52.3
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 4.2e-13 77.8 75 53.3
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 5.5e-13 77.4 77 53.2
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 5.5e-13 77.4 63 52.4
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 7.2e-13 77.0 78 46.2
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 7.2e-13 77.0 76 50.0
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 7.2e-13 77.0 76 50.0
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 7.2e-13 77.0 66 51.5
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 7.2e-13 77.0 64 56.2
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 9.4e-13 76.6 79 49.4
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 9.4e-13 76.6 77 48.1
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 1.2e-12 76.3 70 52.9
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 1.2e-12 76.3 83 45.8
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 1.2e-12 76.3 65 55.4
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 1.6e-12 75.9 64 53.1
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.6e-12 75.9 82 47.6
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 2.1e-12 75.5 66 50.0
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 2.1e-12 75.5 65 47.7
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 2.7e-12 75.1 65 50.8
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 2.7e-12 75.1 77 48.1
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 2.7e-12 75.1 64 54.7
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 2.7e-12 75.1 65 53.8
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 2.7e-12 75.1 66 53.0
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.6e-12 74.7 66 54.5
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.6e-12 74.7 66 54.5
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 3.6e-12 74.7 66 54.5
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 3.6e-12 74.7 63 55.6
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 4.7e-12 74.3 66 53.0
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 6.1e-12 73.9 77 46.8
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 6.1e-12 73.9 77 46.8
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 6.1e-12 73.9 77 46.8
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 6.1e-12 73.9 77 46.8
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 6.1e-12 73.9 63 50.8
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 6.1e-12 73.9 65 53.8
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 6.1e-12 73.9 77 46.8
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 8.0e-12 73.6 77 46.8
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 8.0e-12 73.6 77 46.8
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 8.0e-12 73.6 77 44.2
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 1.0e-11 73.2 66 51.5
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 1.0e-11 73.2 64 51.6
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 1.0e-11 73.2 66 56.1
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 1.4e-11 72.8 86 44.2
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 1.8e-11 72.4 73 47.9
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 1.8e-11 72.4 80 41.2
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 1.8e-11 72.4 64 57.8
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 4.0e-11 71.2 66 45.5
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 5.2e-11 70.9 78 43.6
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 5.2e-11 70.9 64 48.4
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 5.2e-11 70.9 64 48.4
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 6.7e-11 70.5 65 46.2
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 6.7e-11 70.5 64 51.6
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.1e-10 69.7 77 44.2
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 1.1e-10 69.7 64 50.0
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 1.1e-10 69.7 64 54.7
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 1.1e-10 69.7 64 51.6
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.5e-10 69.3 80 45.0
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 2.0e-10 68.9 76 44.7
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 2.6e-10 68.6 78 42.3
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 2.6e-10 68.6 76 44.7
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 2.6e-10 68.6 67 44.8
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 3.3e-10 68.2 67 43.3
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 4.4e-10 67.8 63 54.0
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 5.7e-10 67.4 65 55.4
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 2.2e-09 65.5 75 41.3
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 2.8e-09 65.1 55 50.9
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 2.8e-09 65.1 56 53.6
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 2.8e-09 65.1 77 42.9
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 3.7e-09 64.7 80 41.2
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 1.4e-08 62.8 76 43.4
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 2.4e-08 62.0 69 43.5
Zm00001eb319020 Zea mays HOM05D005649 ORTHO05D006837 7.0e-08 60.5 66 43.9
Zm00001eb198610 Zea mays HOM05D005649 ORTHO05D006837 9.1e-08 60.1 66 42.4
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 4.5e-07 57.8 65 43.1
SEGI_28459 Sequoiadendron giganteum HOM05D005649 ORTHO05D006837 7.7e-07 57.0 61 42.6
Os08g0546300 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 1.3e-06 56.2 67 38.8


User provided reference genes

Program Settings