Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1468.0 712 100.0
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1196.4 694 80.4
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1173.7 713 78.4
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1165.2 707 78.1
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1164.4 705 78.0
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1164.4 699 78.1
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1161.0 706 77.9
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1157.5 705 78.2
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1155.6 692 78.8
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1155.2 707 78.1
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1154.8 707 77.2
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1154.4 695 78.3
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1153.7 699 78.1
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1153.7 708 77.3
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1153.7 699 77.4
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1152.9 707 77.5
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1152.5 706 77.5
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1152.1 709 76.6
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1150.2 707 77.4
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1149.8 704 77.4
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1149.4 707 77.2
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1149.4 707 76.1
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1149.4 707 76.8
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1149.0 706 77.3
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1148.7 702 77.4
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1148.3 694 77.8
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1147.9 705 76.6
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1147.1 707 76.1
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1147.1 708 76.8
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1146.3 707 76.4
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1146.0 707 77.2
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1145.6 707 76.0
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1145.6 705 76.5
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1144.8 706 76.6
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1144.4 705 75.9
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1144.4 707 76.8
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1144.0 694 78.0
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1144.0 707 76.9
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1144.0 705 77.2
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1143.6 710 77.0
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1143.6 707 76.7
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1143.6 707 76.2
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1143.3 707 76.2
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1142.9 707 75.7
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1141.3 705 76.2
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1140.9 705 75.7
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1140.9 707 77.1
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1140.9 705 75.7
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1140.6 705 75.7
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1140.2 705 77.0
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1140.2 705 76.2
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1139.8 705 76.5
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1139.8 705 75.6
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1139.8 705 75.6
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1139.0 707 75.8
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1138.6 694 76.9
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1138.6 707 76.0
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1137.9 707 75.8
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1136.3 707 76.8
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1135.9 690 77.7
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1135.9 693 77.2
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1135.6 707 76.0
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1135.2 702 75.6
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1135.2 694 76.5
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1134.8 705 76.3
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1134.8 694 76.7
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1134.4 707 76.0
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1134.4 706 76.1
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1132.9 694 76.9
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1131.3 694 76.9
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1130.9 710 75.8
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1130.5 750 72.5
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1129.0 703 75.5
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1128.6 699 76.3
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1128.2 699 75.5
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1126.3 749 72.9
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1125.2 711 74.8
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1124.8 710 74.8
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1121.7 698 76.5
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1121.7 699 75.4
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1121.7 699 75.0
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1119.0 713 74.1
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1117.8 722 74.0
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1116.7 699 74.8
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1114.0 699 75.4
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1113.2 709 73.9
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1112.8 699 74.4
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1112.8 699 75.0
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1111.7 699 75.1
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1111.3 707 74.4
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1109.7 707 74.3
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1109.4 754 71.1
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1109.4 754 71.1
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1106.7 699 74.8
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1104.4 708 73.6
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1102.8 704 74.4
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1102.0 802 68.1
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1099.7 694 74.4
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1098.6 767 69.4
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 0.0e+00 1097.4 693 74.0
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1090.9 695 74.0
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1090.5 711 73.3
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1086.6 711 73.0
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1086.2 710 72.8
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1083.2 702 73.2
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1082.4 663 77.4
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1080.5 707 72.4
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1075.8 706 73.7
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1075.5 707 72.8
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 1.7e-310 1068.9 693 73.9
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 1.1e-309 1066.2 659 77.1
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 1.7e-307 1058.9 707 71.4
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 1.6e-305 1052.4 706 71.4
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 1.0e-304 1049.7 707 71.6
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 2.6e-303 1045.0 640 77.2
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 2.5e-298 1028.5 695 70.1
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 2.0e-292 1008.8 616 77.8
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 8.5e-291 1003.4 616 77.3
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.7e-286 989.2 692 66.9
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 5.9e-284 980.7 707 66.2
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 2.9e-283 978.4 713 64.5
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 7.3e-274 947.2 705 64.8
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 4.7e-273 944.5 585 76.6
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 1.8e-272 942.6 725 66.2
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 1.0e-267 926.8 527 83.1
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 8.9e-264 913.7 705 63.5
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 8.3e-262 907.1 690 61.9
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.9e-258 896.0 697 64.3
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 1.4e-256 889.8 628 65.8
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 1.8e-256 889.4 612 67.8
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 2.0e-255 885.9 694 61.2
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 3.5e-236 822.0 710 56.3
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 2.0e-231 806.2 783 52.5
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 2.9e-230 802.4 480 79.8
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 2.0e-207 726.5 712 50.7
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 7.9e-204 714.5 502 69.1
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 5.5e-181 638.6 418 71.8
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.1e-176 622.9 422 69.7
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.2e-146 524.6 301 84.1
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 1.7e-145 520.8 377 65.0
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 8.1e-140 501.9 330 73.3
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 5.4e-136 489.2 318 74.8
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.0e-134 485.0 290 79.0
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.8e-124 450.3 326 68.4
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 6.9e-123 445.7 349 65.9
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 7.9e-111 405.6 313 65.2
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.3e-89 335.1 311 55.6
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.1e-87 327.8 209 74.2
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 2.7e-79 300.8 397 47.1
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 7.9e-79 299.3 183 73.2
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 2.2e-65 254.6 188 62.8
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 9.4e-64 249.2 188 65.4
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 8.0e-63 246.1 203 58.1
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 1.0e-62 245.7 353 44.2
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 5.9e-58 229.9 174 66.1
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 6.8e-46 189.9 219 42.5
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 3.6e-39 167.5 174 52.9
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 1.3e-36 159.1 156 55.1
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 1.4e-35 155.6 118 60.2
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 1.6e-34 152.1 101 64.4
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 3.5e-26 124.4 114 54.4
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 6.6e-25 120.2 80 62.5
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 5.6e-24 117.1 161 44.7
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 6.2e-23 113.6 63 76.2
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 8.3e-20 103.2 161 38.5
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 1.9e-19 102.1 103 49.5
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 4.1e-19 100.9 60 76.7
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 6.0e-18 97.1 161 37.3
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 1.1e-16 92.8 110 49.1
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 7.3e-16 90.1 111 43.2
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 2.8e-15 88.2 51 76.5
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 2.8e-15 88.2 130 43.1
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 2.1e-10 72.0 50 72.0
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 1.3e-07 62.8 52 59.6
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 1.6e-07 62.4 51 60.8
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 1.4e-06 59.3 44 72.7
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 1.4e-06 59.3 40 62.5
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 1.8e-06 58.9 106 36.8
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 5.3e-06 57.4 34 79.4


User provided reference genes

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