Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 1.6e-132 476.1 236 100.0
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 1.6e-36 157.1 166 51.8
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 3.6e-36 156.0 171 50.3
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 8.0e-36 154.8 224 43.3
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 1.0e-35 154.5 180 48.9
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 1.4e-35 154.1 259 41.3
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 1.4e-35 154.1 258 41.5
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 1.4e-35 154.1 171 50.9
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 1.8e-35 153.7 169 52.1
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 2.3e-35 153.3 174 50.0
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 4.0e-35 152.5 169 50.9
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.2e-34 151.0 169 52.7
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 1.2e-34 151.0 237 40.9
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.5e-34 150.6 171 47.4
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 2.0e-34 150.2 168 51.2
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 2.0e-34 150.2 178 48.3
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 2.6e-34 149.8 182 49.5
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 3.4e-34 149.4 229 41.5
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 3.4e-34 149.4 163 49.7
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 5.7e-34 148.7 165 49.1
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 5.7e-34 148.7 180 48.3
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 5.7e-34 148.7 234 43.2
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 5.7e-34 148.7 179 47.5
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 7.5e-34 148.3 205 43.9
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 9.8e-34 147.9 236 39.8
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 1.3e-33 147.5 173 48.0
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.7e-33 147.1 178 48.3
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.7e-33 147.1 171 47.4
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.7e-33 147.1 177 45.2
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 2.9e-33 146.4 171 47.4
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 3.7e-33 146.0 235 39.1
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 1.1e-32 144.4 169 45.6
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 1.1e-32 144.4 174 43.7
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 1.8e-32 143.7 173 45.7
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.8e-32 143.7 217 40.6
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.4e-32 143.3 172 46.5
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 2.4e-32 143.3 179 45.8
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 3.2e-32 142.9 165 47.9
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 3.2e-32 142.9 235 37.9
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 4.1e-32 142.5 178 46.6
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 4.1e-32 142.5 163 47.2
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 4.1e-32 142.5 216 39.8
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 5.4e-32 142.1 164 48.8
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 5.4e-32 142.1 171 44.4
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 5.4e-32 142.1 212 40.1
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 5.4e-32 142.1 169 46.7
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 7.0e-32 141.7 227 38.8
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 7.0e-32 141.7 180 45.0
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 9.2e-32 141.4 172 47.1
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 1.2e-31 141.0 204 44.6
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.2e-31 141.0 171 46.2
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 1.2e-31 141.0 170 46.5
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 1.2e-31 141.0 173 47.4
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.2e-31 141.0 171 46.8
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 1.6e-31 140.6 207 42.0
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 2.0e-31 140.2 178 45.5
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 2.0e-31 140.2 169 47.3
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 2.0e-31 140.2 238 38.7
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 2.0e-31 140.2 179 45.3
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 2.7e-31 139.8 193 44.6
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 3.5e-31 139.4 173 45.7
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 4.6e-31 139.0 176 45.5
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 4.6e-31 139.0 163 48.5
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 5.9e-31 138.7 172 46.5
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 5.9e-31 138.7 230 40.4
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 5.9e-31 138.7 178 45.5
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 7.8e-31 138.3 204 44.1
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 1.0e-30 137.9 163 48.5
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 1.3e-30 137.5 246 37.8
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 1.7e-30 137.1 169 46.7
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 2.3e-30 136.7 210 41.9
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 2.3e-30 136.7 230 39.1
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 3.9e-30 136.0 170 47.6
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 1.1e-29 134.4 171 47.4
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 4.3e-29 132.5 234 41.5
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 5.6e-29 132.1 237 40.1
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 7.3e-29 131.7 233 39.9
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 9.5e-29 131.3 196 41.8
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 1.2e-28 131.0 204 39.7
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 1.6e-28 130.6 233 39.9
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 1.6e-28 130.6 184 42.9
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 2.1e-28 130.2 169 45.0
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 3.6e-28 129.4 172 45.3
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 3.6e-28 129.4 225 39.1
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 3.6e-28 129.4 165 44.8
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 3.6e-28 129.4 165 44.8
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 6.2e-28 128.6 177 44.6
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 1.8e-27 127.1 176 46.6
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 1.8e-27 127.1 176 46.6
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 1.8e-27 127.1 183 40.4
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 3.1e-27 126.3 209 39.7
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 4.0e-27 125.9 168 46.4
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 4.0e-27 125.9 197 41.6
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 6.8e-27 125.2 267 35.2
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 6.8e-27 125.2 212 40.1
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 8.9e-27 124.8 171 45.6
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 8.9e-27 124.8 179 44.1
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 1.2e-26 124.4 170 42.4
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 1.5e-26 124.0 204 41.2
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 2.0e-26 123.6 209 39.2
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 9.8e-26 121.3 267 37.5
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 1.3e-25 120.9 195 40.0
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 1.7e-25 120.6 166 42.8
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 6.4e-25 118.6 190 41.1
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 1.1e-24 117.9 164 43.3
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 1.4e-24 117.5 150 48.7
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 2.4e-24 116.7 237 36.7
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 2.4e-24 116.7 274 33.2
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 3.2e-24 116.3 166 43.4
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 1.2e-23 114.4 168 41.7
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 1.2e-23 114.4 157 46.5
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 2.0e-23 113.6 180 38.9
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 2.7e-23 113.2 147 43.5
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 4.6e-23 112.5 176 39.8
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 3.0e-22 109.8 204 36.3
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 8.6e-22 108.2 164 41.5
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 1.9e-21 107.1 238 35.7
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 5.6e-21 105.5 195 35.4
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 5.6e-21 105.5 195 35.4
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 7.3e-21 105.1 194 37.1
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 2.3e-19 100.1 191 36.1
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 2.3e-19 100.1 146 41.8
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 5.2e-19 99.0 116 47.4
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 8.9e-19 98.2 171 38.0
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 1.2e-18 97.8 143 43.4
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 7.5e-18 95.1 124 46.8
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 2.2e-17 93.6 235 31.9
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 4.9e-17 92.4 174 37.9
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 4.9e-17 92.4 174 37.9
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 2.4e-16 90.1 169 34.9
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 4.1e-16 89.4 193 34.7
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 4.1e-16 89.4 192 35.4
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 1.3e-14 84.3 143 37.8
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 8.6e-14 81.6 186 37.1
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 4.3e-13 79.3 164 36.6
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 5.6e-13 79.0 62 58.1
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 9.5e-13 78.2 178 34.3
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 9.5e-13 78.2 167 34.7
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 1.2e-12 77.8 181 34.3
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 8.1e-12 75.1 119 42.9
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 8.1e-12 75.1 60 55.0
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 1.1e-11 74.7 127 40.2
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 3.1e-11 73.2 141 37.6
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 1.7e-09 67.4 167 32.3
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 1.7e-09 67.4 121 38.8
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 4.9e-09 65.9 45 62.2
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 4.9e-09 65.9 45 62.2
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 4.9e-09 65.9 45 62.2
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 4.9e-09 65.9 45 64.4
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 4.9e-09 65.9 45 62.2
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 2.4e-08 63.5 68 47.1
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 2.4e-08 63.5 43 62.8
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 3.2e-08 63.2 48 60.4
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 3.2e-08 63.2 74 44.6
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 5.4e-08 62.4 130 34.6
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 7.1e-08 62.0 43 60.5
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 7.1e-08 62.0 110 39.1
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 9.2e-08 61.6 46 58.7
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 1.2e-07 61.2 41 65.9
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 2.7e-07 60.1 139 35.3
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.0e-06 58.2 42 54.8
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 1.3e-06 57.8 67 47.8
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 1.7e-06 57.4 139 34.5
MCO09G316 Micromonas commoda HOM05D003513 ORTHO05D004660 8.6e-06 55.1 168 29.8


User provided reference genes

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