Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025255 Vanilla planifolia HOM05D006563 ORTHO05D008154 2.2e-123 445.7 226 100.0
Ciclev10032657m.g Citrus clementina HOM05D006563 ORTHO05D008154 4.4e-92 341.7 228 75.4
TAR374G0821 Trochodendron aralioides HOM05D006563 ORTHO05D008154 2.9e-91 339.0 225 75.1
ClCG03G003770 Citrullus lanatus HOM05D006563 ORTHO05D008154 6.4e-91 337.8 226 73.9
Os01g0765000 Oryza sativa ssp. japonica HOM05D006563 ORTHO05D008154 2.4e-90 335.9 232 73.7
Manes.06G119700 Manihot esculenta HOM05D006563 ORTHO05D008154 3.2e-90 335.5 229 73.4
Dinv23146 Davidia involucrata HOM05D006563 ORTHO05D008154 4.1e-90 335.1 224 74.1
GSVIVG01008544001 Vitis vinifera HOM05D006563 ORTHO05D008154 7.1e-90 334.3 228 73.7
Potri.015G096400 Populus trichocarpa HOM05D006563 ORTHO05D008154 9.2e-90 334.0 232 73.3
CANSAT80G0303 Cannabis sativa HOM05D006563 ORTHO05D008154 1.2e-89 333.6 233 73.0
COL.COLO4_28130 Corchorus olitorius HOM05D006563 ORTHO05D008154 1.6e-89 333.2 229 76.0
MD14G1156900 Malus domestica HOM05D006563 ORTHO05D008154 2.7e-89 332.4 228 74.1
Prupe.5G150900 Prunus persica HOM05D006563 ORTHO05D008154 6.0e-89 331.3 228 73.7
TWI39G0919 Tripterygium wilfordii HOM05D006563 ORTHO05D008154 1.7e-88 329.7 224 75.0
MELO3C002362.2 Cucumis melo HOM05D006563 ORTHO05D008154 3.0e-88 328.9 226 72.6
CsaV3_1G009660 Cucumis sativus L. HOM05D006563 ORTHO05D008154 3.0e-88 328.9 226 73.0
Lj4g0002806 Lotus japonicus HOM05D006563 ORTHO05D008154 3.9e-88 328.6 224 74.6
Peaxi162Scf00089g00627 Petunia axillaris HOM05D006563 ORTHO05D008154 3.9e-88 328.6 225 72.0
AT3G48540 Arabidopsis thaliana HOM05D006563 ORTHO05D008154 5.1e-88 328.2 230 72.2
Medtr4g103300 Medicago truncatula HOM05D006563 ORTHO05D008154 5.1e-88 328.2 231 72.7
Cpa.g.sc13.115 Carica papaya HOM05D006563 ORTHO05D008154 6.6e-88 327.8 229 72.5
Nitab4.5_0003282g0060 Nicotiana tabacum HOM05D006563 ORTHO05D008154 6.6e-88 327.8 224 71.4
Solyc03g111350.3 Solanum lycopersicum HOM05D006563 ORTHO05D008154 8.6e-88 327.4 225 72.4
Thecc.03G129300 Theobroma cacao HOM05D006563 ORTHO05D008154 8.6e-88 327.4 226 73.0
Ca_26101_v3 Cicer arietinum L. HOM05D006563 ORTHO05D008154 1.1e-87 327.0 224 74.1
RcHm_v2.0_Chr7g0190121 Rosa chinensis HOM05D006563 ORTHO05D008154 1.1e-87 327.0 228 72.4
PGSC0003DMG400015182 Solanum tuberosum HOM05D006563 ORTHO05D008154 1.1e-87 327.0 225 72.0
Phvul.003G211300 Phaseolus vulgaris HOM05D006563 ORTHO05D008154 1.5e-87 326.6 224 73.7
AL5G27990 Arabidopsis lyrata HOM05D006563 ORTHO05D008154 3.3e-87 325.5 230 71.3
CAN.G352.13 Capsicum annuum HOM05D006563 ORTHO05D008154 3.3e-87 325.5 230 71.3
FAN04G0682 Fragaria x ananassa HOM05D006563 ORTHO05D008154 4.3e-87 325.1 231 70.6
Psat4g066200 Pisum sativum HOM05D006563 ORTHO05D008154 4.3e-87 325.1 222 73.0
Atru.chr6.1794 Acer truncatum HOM05D006563 ORTHO05D008154 5.6e-87 324.7 226 70.8
Sp5g13440 Schrenkiella parvula HOM05D006563 ORTHO05D008154 7.3e-87 324.3 226 70.8
Sc04g0000640 Simmondsia chinensis HOM05D006563 ORTHO05D008154 7.3e-87 324.3 227 72.7
Sopen03g030480 Solanum pennellii HOM05D006563 ORTHO05D008154 9.6e-87 323.9 225 71.6
Carub.0005s1473 Capsella rubella HOM05D006563 ORTHO05D008154 1.2e-86 323.6 228 71.9
Hma1.2p1_0426F.1_g150610 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 1.2e-86 323.6 226 70.8
PSO017G5417 Papaver somniferum HOM05D006563 ORTHO05D008154 1.2e-86 323.6 227 72.2
SalBow6G4201 Salvia bowleyana HOM05D006563 ORTHO05D008154 1.6e-86 323.2 225 70.2
SalBow6G4357 Salvia bowleyana HOM05D006563 ORTHO05D008154 1.6e-86 323.2 225 70.2
Eucgr.B00111 Eucalyptus grandis HOM05D006563 ORTHO05D008154 2.1e-86 322.8 170 89.4
FAN18G2834 Fragaria x ananassa HOM05D006563 ORTHO05D008154 2.1e-86 322.8 231 69.7
Nitab4.5_0004750g0020 Nicotiana tabacum HOM05D006563 ORTHO05D008154 3.6e-86 322.0 226 71.2
BcaB05g23009 Brassica carinata HOM05D006563 ORTHO05D008154 4.7e-86 321.6 226 70.8
A01p25680 Brassica napus HOM05D006563 ORTHO05D008154 4.7e-86 321.6 226 70.4
BraA01t02447Z Brassica rapa HOM05D006563 ORTHO05D008154 4.7e-86 321.6 226 70.4
FAN04G3009 Fragaria x ananassa HOM05D006563 ORTHO05D008154 4.7e-86 321.6 231 70.1
FAN13G1867 Fragaria x ananassa HOM05D006563 ORTHO05D008154 4.7e-86 321.6 231 70.1
BcaC09g49875 Brassica carinata HOM05D006563 ORTHO05D008154 6.2e-86 321.2 226 70.4
C01p32250 Brassica napus HOM05D006563 ORTHO05D008154 6.2e-86 321.2 226 70.4
Thhalv10010696m.g Eutrema salsugineum HOM05D006563 ORTHO05D008154 1.1e-85 320.5 230 69.6
FvH4_5g08340 Fragaria vesca HOM05D006563 ORTHO05D008154 1.1e-85 320.5 231 69.3
Aqoxy5G03376 Aquilegia oxysepala HOM05D006563 ORTHO05D008154 2.4e-85 319.3 235 68.5
Oeu036009.4 Olea europaea HOM05D006563 ORTHO05D008154 2.4e-85 319.3 228 71.5
Gorai.008G206400 Gossypium raimondii HOM05D006563 ORTHO05D008154 4.0e-85 318.5 229 72.5
BolC1t03129H Brassica oleracea HOM05D006563 ORTHO05D008154 5.2e-85 318.2 226 69.9
Gohir.D12G192100 Gossypium hirsutum HOM05D006563 ORTHO05D008154 5.2e-85 318.2 224 72.3
SGA_v2.0_scaffold7G04149 Striga asiatica HOM05D006563 ORTHO05D008154 6.8e-85 317.8 225 70.7
CSS0042372 Camellia sinensis var. sinensis HOM05D006563 ORTHO05D008154 1.2e-84 317.0 226 69.9
Cc09_g04000 Coffea canephora HOM05D006563 ORTHO05D008154 1.2e-84 317.0 171 86.5
ATR0561G278 Amborella trichopoda HOM05D006563 ORTHO05D008154 1.5e-84 316.6 209 73.2
CDE05G1358 Ceratophyllum demersum HOM05D006563 ORTHO05D008154 1.5e-84 316.6 209 74.2
Duzib205G1898 Durio zibethinus HOM05D006563 ORTHO05D008154 1.5e-84 316.6 227 70.9
Gohir.A12G189700 Gossypium hirsutum HOM05D006563 ORTHO05D008154 1.5e-84 316.6 227 72.2
Aa31LG4G17160 Aethionema arabicum HOM05D006563 ORTHO05D008154 2.6e-84 315.8 228 70.2
CARHR157340 Cardamine hirsuta HOM05D006563 ORTHO05D008154 4.4e-84 315.1 230 69.1
Hund02442 Selenicereus undatus HOM05D006563 ORTHO05D008154 9.9e-84 313.9 229 69.9
Migut.D01965 Erythranthe guttata HOM05D006563 ORTHO05D008154 1.3e-83 313.5 226 69.9
HanXRQChr13g0408701 Helianthus annuus HOM05D006563 ORTHO05D008154 4.9e-83 311.6 225 68.9
Actinidia08872 Actinidia chinensis HOM05D006563 ORTHO05D008154 8.4e-83 310.8 224 69.2
QL10p002894 Quercus lobata HOM05D006563 ORTHO05D008154 1.4e-82 310.1 253 65.2
Sed0017169 Sechium edule HOM05D006563 ORTHO05D008154 1.4e-82 310.1 227 69.2
Sabra15G0117200 Salix brachista HOM05D006563 ORTHO05D008154 3.2e-82 308.9 211 73.9
MBI07_g16949_MAGBIO Magnolia biondii HOM05D006563 ORTHO05D008154 4.2e-82 308.5 225 70.2
Nn4g22315 Nelumbo nucifera HOM05D006563 ORTHO05D008154 7.1e-82 307.8 211 73.0
Glyma.05G048400 Glycine max HOM05D006563 ORTHO05D008154 2.7e-81 305.8 208 76.4
MSTRG.9682 Avicennia marina HOM05D006563 ORTHO05D008154 1.7e-80 303.1 229 65.9
Lsat_1_v5_gn_1_28920 Lactuca sativa HOM05D006563 ORTHO05D008154 3.9e-80 302.0 228 65.8
Rhsim12G0174600 Rhododendron simsii HOM05D006563 ORTHO05D008154 1.1e-79 300.4 235 67.2
Oeu040847.2 Olea europaea HOM05D006563 ORTHO05D008154 7.3e-79 297.7 263 60.8
PSO478G0702 Papaver somniferum HOM05D006563 ORTHO05D008154 9.6e-79 297.4 211 72.0
EL10Ac5g11412 Beta vulgaris HOM05D006563 ORTHO05D008154 2.1e-78 296.2 210 72.4
AUR62029612 Chenopodium quinoa HOM05D006563 ORTHO05D008154 6.2e-78 294.7 207 71.0
unitig_46.g18474 Utricularia gibba HOM05D006563 ORTHO05D008154 1.1e-77 293.9 229 65.9
AUR62034825 Chenopodium quinoa HOM05D006563 ORTHO05D008154 1.2e-76 290.4 207 70.0
FAN08G2924 Fragaria x ananassa HOM05D006563 ORTHO05D008154 5.8e-76 288.1 249 61.0
CiPaw.11G007100 Carya illinoinensis HOM05D006563 ORTHO05D008154 8.4e-75 284.3 227 66.1
SEGI_38890 Sequoiadendron giganteum HOM05D006563 ORTHO05D008154 4.2e-74 282.0 170 77.1
PGR044G0473 Punica granatum HOM05D006563 ORTHO05D008154 6.0e-73 278.1 228 65.8
TPR.G19207 Trifolium pratense HOM05D006563 ORTHO05D008154 1.3e-72 276.9 152 87.5
arahy.Tifrunner.gnm1.ann1.G9M8TR Arachis hypogaea HOM05D006563 ORTHO05D008154 3.0e-72 275.8 223 65.5
arahy.Tifrunner.gnm1.ann1.76974R Arachis hypogaea HOM05D006563 ORTHO05D008154 4.3e-71 271.9 236 63.1
AagrBONN_evm.TU.Sc2ySwM_228.2386 Anthoceros agrestis HOM05D006563 ORTHO05D008154 1.3e-70 270.4 187 69.5
Zm00001eb370270 Zea mays HOM05D006563 ORTHO05D008154 6.2e-70 268.1 228 63.6
Pp3c2_32260 Physcomitrium patens HOM05D006563 ORTHO05D008154 1.8e-69 266.5 192 65.6
Potri.012G097800 Populus trichocarpa HOM05D006563 ORTHO05D008154 9.9e-68 260.8 227 63.0
VMungo1215G3263 Vigna mungo HOM05D006563 ORTHO05D008154 9.3e-66 254.2 175 72.6
Medtr4g057655 Medicago truncatula HOM05D006563 ORTHO05D008154 4.6e-65 251.9 227 61.2
Haze_07139 Corylus avellana HOM05D006563 ORTHO05D008154 1.5e-63 246.9 211 63.5
SMO116G0330 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 2.4e-61 239.6 147 76.2
Medtr4g071665 Medicago truncatula HOM05D006563 ORTHO05D008154 2.6e-60 236.1 227 58.6
Sc04g0000170 Simmondsia chinensis HOM05D006563 ORTHO05D008154 2.2e-59 233.0 208 62.5
DCAR_016389 Daucus carota HOM05D006563 ORTHO05D008154 3.2e-58 229.2 235 51.5
PRCOL_00002657 Prasinoderma coloniale HOM05D006563 ORTHO05D008154 1.6e-57 226.9 161 62.7
Lj5A96G46 Lonicera japonica HOM05D006563 ORTHO05D008154 1.3e-56 223.8 145 79.3
vmacro16718 Vaccinium macrocarpon HOM05D006563 ORTHO05D008154 3.9e-56 222.2 332 43.4
Cc09_g03990 Coffea canephora HOM05D006563 ORTHO05D008154 5.1e-56 221.9 123 83.7
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 9.6e-55 217.6 226 54.0
Lalb_Chr13g0297241 Lupinus albus HOM05D006563 ORTHO05D008154 2.1e-54 216.5 157 70.7
MCO04G397 Micromonas commoda HOM05D006563 ORTHO05D008154 2.5e-50 203.0 138 63.8
Cre19.g750897 Chlamydomonas reinhardtii HOM05D006563 ORTHO05D008154 3.1e-45 186.0 175 53.1
Haze_26466 Corylus avellana HOM05D006563 ORTHO05D008154 3.0e-40 169.5 159 50.9
CBR_g19095 Chara braunii HOM05D006563 ORTHO05D008154 3.9e-40 169.1 134 59.7
AL1G65740 Arabidopsis lyrata HOM05D006563 ORTHO05D008154 2.0e-28 130.2 63 92.1
SMO199G0092 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 6.1e-25 118.6 86 64.0
SMO361G0344 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 8.8e-24 114.8 63 79.4
Hma1.2p1_0426F.1_g150620 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 7.5e-23 111.7 68 80.9
MD06G1141700 Malus domestica HOM05D006563 ORTHO05D008154 2.7e-20 103.2 144 42.4
SEGI_22016 Sequoiadendron giganteum HOM05D006563 ORTHO05D008154 1.2e-17 94.4 49 83.7
Hma1.2p1_0426F.1_g150600 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 5.7e-15 85.5 89 48.3


User provided reference genes

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