Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025217 Vanilla planifolia HOM05D002567 ORTHO05D006538 0.0e+00 1895.2 988 100.0
MBI19_g12821_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 1.0e-188 664.8 1085 42.3
Nn3g21405 Nelumbo nucifera HOM05D002567 ORTHO05D006538 5.0e-188 662.5 1061 42.4
TAR362G0158 Trochodendron aralioides HOM05D002567 ORTHO05D006538 1.8e-185 654.1 773 50.5
Nn5g30059 Nelumbo nucifera HOM05D002567 ORTHO05D006538 3.3e-184 649.8 874 47.1
CiPaw.07G103600 Carya illinoinensis HOM05D002567 ORTHO05D006538 9.7e-184 648.3 1027 42.3
QL12p030584 Quercus lobata HOM05D002567 ORTHO05D006538 9.4e-179 631.7 1053 42.5
Duzib138G0932 Durio zibethinus HOM05D002567 ORTHO05D006538 6.1e-178 629.0 900 45.1
Thecc.01G293900 Theobroma cacao HOM05D002567 ORTHO05D006538 2.0e-176 624.0 864 45.9
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 3.3e-176 623.2 858 45.1
Prupe.8G255600 Prunus persica HOM05D002567 ORTHO05D006538 1.3e-175 621.3 999 42.5
Cpa.g.sc9.189 Carica papaya HOM05D002567 ORTHO05D006538 1.1e-174 618.2 1010 42.1
GSVIVG01010967001 Vitis vinifera HOM05D002567 ORTHO05D006538 3.1e-174 616.7 792 47.0
Dinv33021 Davidia involucrata HOM05D002567 ORTHO05D006538 4.1e-174 616.3 1022 41.9
CANSAT25G2282 Cannabis sativa HOM05D002567 ORTHO05D006538 2.0e-173 614.0 732 49.0
MD11G1302000 Malus domestica HOM05D002567 ORTHO05D006538 6.5e-172 609.0 1025 42.0
MELO3C016045.2 Cucumis melo HOM05D002567 ORTHO05D006538 1.1e-171 608.2 775 47.5
Aqoxy5G00702 Aquilegia oxysepala HOM05D002567 ORTHO05D006538 9.4e-171 605.1 920 43.2
Potri.002G209216 Populus trichocarpa HOM05D002567 ORTHO05D006538 9.4e-171 605.1 903 43.4
CsaV3_7G028930 Cucumis sativus L. HOM05D002567 ORTHO05D006538 1.6e-170 604.4 802 46.1
Gorai.004G088100 Gossypium raimondii HOM05D002567 ORTHO05D006538 7.4e-168 595.5 776 46.8
MD03G1284300 Malus domestica HOM05D002567 ORTHO05D006538 9.7e-168 595.1 1019 41.0
Cc01_g20510 Coffea canephora HOM05D002567 ORTHO05D006538 2.8e-167 593.6 747 47.9
Sed0021907 Sechium edule HOM05D002567 ORTHO05D006538 2.6e-165 587.0 849 44.1
Gohir.A08G074400 Gossypium hirsutum HOM05D002567 ORTHO05D006538 1.7e-164 584.3 1045 39.6
ClCG09G006200 Citrullus lanatus HOM05D002567 ORTHO05D006538 2.9e-164 583.6 847 44.4
Sabra02G0150900 Salix brachista HOM05D002567 ORTHO05D006538 2.9e-164 583.6 917 41.7
Lalb_Chr15g0078671 Lupinus albus HOM05D002567 ORTHO05D006538 3.8e-164 583.2 860 43.7
PSO210G0804 Papaver somniferum HOM05D002567 ORTHO05D006538 3.8e-164 583.2 1036 38.3
Glyma.19G208700 Glycine max HOM05D002567 ORTHO05D006538 5.0e-164 582.8 1048 40.2
Glyma.03G211500 Glycine max HOM05D002567 ORTHO05D006538 6.5e-164 582.4 1048 39.9
Gohir.D08G083700 Gossypium hirsutum HOM05D002567 ORTHO05D006538 1.5e-163 581.3 1036 39.7
TWI14G0289 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 1.5e-163 581.3 1037 39.2
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 3.2e-163 580.1 1039 39.8
VMungo1383G1965 Vigna mungo HOM05D002567 ORTHO05D006538 1.2e-162 578.2 844 44.0
PSO832G4557 Papaver somniferum HOM05D002567 ORTHO05D006538 6.1e-162 575.9 988 38.9
Dinv19733 Davidia involucrata HOM05D002567 ORTHO05D006538 8.0e-162 575.5 635 51.5
RcHm_v2.0_Chr6g0293161 Rosa chinensis HOM05D002567 ORTHO05D006538 2.3e-161 573.9 973 40.6
FvH4_2g25100 Fragaria vesca HOM05D002567 ORTHO05D006538 1.2e-160 571.6 991 40.2
Lj1g0027200 Lotus japonicus HOM05D002567 ORTHO05D006538 1.5e-160 571.2 840 44.0
Phvul.001G204600 Phaseolus vulgaris HOM05D002567 ORTHO05D006538 2.6e-160 570.5 1050 39.2
PGR119G0460 Punica granatum HOM05D002567 ORTHO05D006538 9.7e-160 568.5 968 41.9
CDE11G0231 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 1.7e-159 567.8 955 39.7
Potri.014G132800 Populus trichocarpa HOM05D002567 ORTHO05D006538 1.7e-159 567.8 895 42.0
Atru.chr5.1232 Acer truncatum HOM05D002567 ORTHO05D006538 8.2e-159 565.5 876 42.4
TWI59G0117 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 4.1e-158 563.1 1007 39.1
Ciclev10018617m.g Citrus clementina HOM05D002567 ORTHO05D006538 7.7e-157 558.9 1048 38.9
Lsat_1_v5_gn_8_54500 Lactuca sativa HOM05D002567 ORTHO05D006538 2.9e-156 557.0 845 43.6
Ca_09134_v3 Cicer arietinum L. HOM05D002567 ORTHO05D006538 5.5e-155 552.7 1040 39.4
CAN.G1562.7 Capsicum annuum HOM05D002567 ORTHO05D006538 7.2e-155 552.4 787 43.8
EL10Ac7g17517 Beta vulgaris HOM05D002567 ORTHO05D006538 1.6e-154 551.2 898 40.2
Sc17g0003440 Simmondsia chinensis HOM05D002567 ORTHO05D006538 2.7e-154 550.4 762 44.1
ATR0706G272 Amborella trichopoda HOM05D002567 ORTHO05D006538 8.0e-154 548.9 864 44.7
CARHR250850 Cardamine hirsuta HOM05D002567 ORTHO05D006538 8.0e-154 548.9 765 44.2
HanXRQChr04g0118111 Helianthus annuus HOM05D002567 ORTHO05D006538 1.4e-153 548.1 805 43.1
TPR.G9283 Trifolium pratense HOM05D002567 ORTHO05D006538 3.0e-153 547.0 779 44.4
AUR62033197 Chenopodium quinoa HOM05D002567 ORTHO05D006538 1.2e-152 545.0 729 46.1
FAN24G0094 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.5e-152 544.7 999 39.6
Carub.0006s3458 Capsella rubella HOM05D002567 ORTHO05D006538 2.0e-152 544.3 970 39.3
THA.LOC104815934 Tarenaya hassleriana HOM05D002567 ORTHO05D006538 2.6e-152 543.9 996 39.8
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 2.8e-151 540.4 849 42.8
Medtr7g108390 Medicago truncatula HOM05D002567 ORTHO05D006538 1.1e-150 538.5 827 43.2
arahy.Tifrunner.gnm1.ann1.B3NEVG Arachis hypogaea HOM05D002567 ORTHO05D006538 2.4e-150 537.3 762 45.0
Zm00001eb142180 Zea mays HOM05D002567 ORTHO05D006538 3.1e-150 537.0 752 44.9
Sopen09g029570 Solanum pennellii HOM05D002567 ORTHO05D006538 9.1e-150 535.4 977 38.4
AT4G02560 Arabidopsis thaliana HOM05D002567 ORTHO05D006538 2.0e-149 534.3 798 42.6
Sp6g02470 Schrenkiella parvula HOM05D002567 ORTHO05D006538 3.5e-149 533.5 979 38.8
BcaC03g16147 Brassica carinata HOM05D002567 ORTHO05D006538 7.7e-149 532.3 1018 38.5
ECA236G0908 Erigeron canadensis HOM05D002567 ORTHO05D006538 7.7e-149 532.3 825 42.9
BcaB05g23644 Brassica carinata HOM05D002567 ORTHO05D006538 3.2e-147 526.9 1010 37.6
C02p39290 Brassica napus HOM05D002567 ORTHO05D006538 9.5e-147 525.4 1025 38.0
BolC2t09940H Brassica oleracea HOM05D002567 ORTHO05D006538 9.5e-147 525.4 1025 38.0
AL6G50490 Arabidopsis lyrata HOM05D002567 ORTHO05D006538 1.2e-146 525.0 992 38.7
A02p24870 Brassica napus HOM05D002567 ORTHO05D006538 6.1e-146 522.7 1024 37.0
BraA02t07474Z Brassica rapa HOM05D002567 ORTHO05D006538 6.1e-146 522.7 1024 37.0
DCAR_018344 Daucus carota HOM05D002567 ORTHO05D006538 1.0e-145 521.9 1010 38.2
AUR62043270 Chenopodium quinoa HOM05D002567 ORTHO05D006538 9.2e-142 508.8 759 42.2
Thhalv10028403m.g Eutrema salsugineum HOM05D002567 ORTHO05D006538 1.2e-141 508.4 979 38.1
CDE05G3083 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 2.7e-141 507.3 917 39.1
FAN20G1419 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.0e-140 505.4 944 39.1
Sopen09g029590 Solanum pennellii HOM05D002567 ORTHO05D006538 1.1e-139 501.9 772 42.1
vmacro02487 Vaccinium macrocarpon HOM05D002567 ORTHO05D006538 1.1e-139 501.9 891 40.6
Rhsim13G0015100 Rhododendron simsii HOM05D002567 ORTHO05D006538 9.8e-136 488.8 948 39.2
Hund18109 Selenicereus undatus HOM05D002567 ORTHO05D006538 3.7e-135 486.9 748 42.9
FAN27G3038 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.4e-134 485.0 920 38.8
FAN15G0803 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.8e-134 484.6 941 38.4
arahy.Tifrunner.gnm1.ann1.VDB3CB Arachis hypogaea HOM05D001550 ORTHO05D001611 1.6e-133 481.5 754 42.2
Oeu046708.2 Olea europaea HOM05D002567 ORTHO05D006538 7.8e-133 479.2 1090 35.7
Aa31LG5G2190 Aethionema arabicum HOM05D002567 ORTHO05D006538 7.3e-131 472.6 1019 36.9
Migut.D00183 Erythranthe guttata HOM05D002567 ORTHO05D006538 3.1e-129 467.2 1009 36.2
Solyc09g074730.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 8.3e-127 459.1 726 42.1
arahy.Tifrunner.gnm1.ann1.8D3299 Arachis hypogaea HOM05D002567 ORTHO05D006538 1.9e-126 458.0 709 43.0
Lj2C1188T12 Lonicera japonica HOM05D002567 ORTHO05D006538 3.5e-125 453.8 608 46.7
MBI19_g13122_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 3.3e-123 447.2 658 45.3
TAR633G1653 Trochodendron aralioides HOM05D002567 ORTHO05D006538 2.3e-121 441.0 422 57.3
Psat3g022840 Pisum sativum HOM05D002567 ORTHO05D006538 3.1e-121 440.7 675 42.7
Lalb_Chr18g0047271 Lupinus albus HOM05D002567 ORTHO05D006538 8.9e-121 439.1 568 46.3
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 1.6e-114 418.3 1048 33.1
SHI15302 Sapria himalayana HOM05D002567 ORTHO05D006538 8.4e-111 406.0 833 35.9
Eucgr.H01191 Eucalyptus grandis HOM05D002567 ORTHO05D006538 1.0e-108 399.1 743 38.8
SGA_v2.0_scaffold2G01415 Striga asiatica HOM05D001550 ORTHO05D006538 9.9e-104 382.5 470 47.4
Sabra14G0099200 Salix brachista HOM05D002567 ORTHO05D006538 6.4e-103 379.8 847 33.5
Peaxi162Scf00067g01812 Petunia axillaris HOM05D002567 ORTHO05D006538 9.3e-94 349.4 448 46.7
Os01g0934300 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D006538 4.5e-88 330.5 350 53.4
unitig_26.g10168 Utricularia gibba HOM05D002567 ORTHO05D006538 9.9e-88 329.3 1013 31.3
Solyc09g074690.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 6.2e-82 310.1 315 53.7
Actinidia28538 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.2e-72 279.3 306 52.0
Manes.05G065900 Manihot esculenta HOM05D002567 ORTHO05D006538 1.0e-60 239.6 439 39.9
Actinidia32249 Actinidia chinensis HOM05D002567 ORTHO05D006538 6.1e-53 213.8 369 39.8
Oeu011428.1 Olea europaea HOM05D002567 ORTHO05D006538 2.0e-48 198.7 195 53.8
Mapoly0032s0010 Marchantia polymorpha HOM05D002567 ORTHO05D006538 1.7e-47 195.7 552 31.3
Actinidia28539 Actinidia chinensis HOM05D002567 ORTHO05D006538 3.8e-47 194.5 361 40.7
Eucgr.H01192 Eucalyptus grandis HOM05D002567 ORTHO05D006538 1.8e-41 175.6 163 57.7
Lj2A1188T56 Lonicera japonica HOM05D002567 ORTHO05D006538 2.1e-37 162.2 230 43.5
Pp3c7_5840 Physcomitrium patens HOM05D002567 ORTHO05D006538 2.7e-37 161.8 362 31.2
Lalb_Chr18g0047261 Lupinus albus HOM05D002567 ORTHO05D006538 1.6e-32 146.0 283 38.9
Peaxi162Scf00067g01813 Petunia axillaris HOM05D002567 ORTHO05D006538 5.5e-30 137.5 170 48.2
Solyc09g074710.2 Solanum lycopersicum HOM05D002567 ORTHO05D006538 5.2e-28 131.0 176 47.2
CBR_g48346 Chara braunii HOM05D002567 ORTHO05D006538 1.5e-27 129.4 381 31.2
Actinidia02761 Actinidia chinensis HOM05D002567 ORTHO05D006538 3.1e-25 121.7 173 45.1
SMO119G0396 Selaginella moellendorffii HOM05D002567 ORTHO05D006538 3.5e-24 118.2 252 30.6
MBI01_g23938_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 1.5e-22 112.8 79 68.4
MBI05_g31851_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 2.3e-20 105.5 74 70.3
Psat0s3384g0160 Pisum sativum HOM05D002567 ORTHO05D006538 2.0e-19 102.4 146 47.3
Actinidia00673 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.3e-18 99.8 108 51.9
MBI02_g41934_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 1.4e-17 96.3 52 86.5
TAR399G0002 Trochodendron aralioides HOM05D002567 ORTHO05D006538 9.2e-17 93.6 67 67.2
Actinidia02760 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.2e-16 93.2 53 81.1
Mapoly0030s0133 Marchantia polymorpha HOM05D002567 ORTHO05D006538 5.2e-12 77.8 220 28.2
Sed0026959 Sechium edule HOM05D002848 ORTHO05D003043 1.5e-11 76.3 263 29.3
Mapoly0055s0074 Marchantia polymorpha HOM05D002567 ORTHO05D006538 5.8e-11 74.3 85 40.0
BcaC04g23997 Brassica carinata HOM05D002567 ORTHO05D006538 1.3e-10 73.2 72 51.4
CsaV3_2G029390 Cucumis sativus L. HOM05D002848 ORTHO05D003043 2.2e-10 72.4 295 29.8
ECA233G1527 Erigeron canadensis HOM05D002848 ORTHO05D003043 2.9e-10 72.0 206 35.0
Mapoly0004s0277 Marchantia polymorpha HOM05D002567 ORTHO05D006538 6.4e-10 70.9 221 27.6
MBI19_g13121_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 1.9e-09 69.3 159 39.0
QL02p010998 Quercus lobata HOM05D002848 ORTHO05D003043 7.8e-08 63.9 304 26.6
TAR381G0737 Trochodendron aralioides HOM05D002848 ORTHO05D003043 1.0e-07 63.5 83 45.8
Actinidia16964 Actinidia chinensis HOM05D002848 ORTHO05D003043 1.3e-07 63.2 85 42.4
Actinidia15403 Actinidia chinensis HOM05D002848 ORTHO05D003043 1.7e-07 62.8 80 43.8
HanXRQChr12g0367651 Helianthus annuus HOM05D002848 ORTHO05D003043 1.7e-07 62.8 262 27.5
CBR_g36670 Chara braunii HOM05D002848 ORTHO05D003043 2.3e-07 62.4 84 36.9
Duzib187G1527 Durio zibethinus HOM05D002848 ORTHO05D003043 2.3e-07 62.4 118 33.9
Actinidia02762 Actinidia chinensis HOM05D002567 ORTHO05D006538 3.0e-07 62.0 95 45.3
CAN.G847.13 Capsicum annuum HOM05D002848 ORTHO05D003043 3.0e-07 62.0 82 42.7
Cfa013922 Carpinus fangiana HOM05D002848 ORTHO05D003043 3.9e-07 61.6 108 38.0
CiPaw.08G064200 Carya illinoinensis HOM05D002848 ORTHO05D003043 5.0e-07 61.2 82 45.1
CBR_g48344 Chara braunii HOM05D002567 ORTHO05D006538 5.0e-07 61.2 196 31.1
Mapoly0111s0041 Marchantia polymorpha HOM05D002848 ORTHO05D003043 8.6e-07 60.5 83 36.1
Gorai.005G111400 Gossypium raimondii HOM05D002848 ORTHO05D003043 1.1e-06 60.1 290 26.2
Pp3c5_3550 Physcomitrium patens HOM05D002848 ORTHO05D003043 1.1e-06 60.1 83 41.0
Gohir.D02G097800 Gossypium hirsutum HOM05D002848 ORTHO05D003043 1.5e-06 59.7 290 26.2
Gohir.D06G001300 Gossypium hirsutum HOM05D002848 ORTHO05D003043 1.5e-06 59.7 144 31.2
Gorai.010G005700 Gossypium raimondii HOM05D002848 ORTHO05D003043 1.5e-06 59.7 140 31.4
PGSC0003DMG400029424 Solanum tuberosum HOM05D002848 ORTHO05D003043 1.5e-06 59.7 82 40.2
Duzib093G1695 Durio zibethinus HOM05D002848 ORTHO05D003043 1.9e-06 59.3 83 39.8
Gohir.D01G099400 Gossypium hirsutum HOM05D002848 ORTHO05D003043 1.9e-06 59.3 80 41.2
Nn5g29271 Nelumbo nucifera HOM05D002848 ORTHO05D003043 1.9e-06 59.3 301 28.6
Os04g0663200 Oryza sativa ssp. japonica HOM05D002848 ORTHO05D003043 1.9e-06 59.3 81 38.3
CAN.G1671.1 Capsicum annuum HOM05D002848 ORTHO05D003043 2.5e-06 58.9 250 27.6
Haze_22606 Corylus avellana HOM05D002848 ORTHO05D003043 2.5e-06 58.9 278 27.3
Gorai.002G124700 Gossypium raimondii HOM05D002848 ORTHO05D003043 2.5e-06 58.9 219 27.4
vmacro21710 Vaccinium macrocarpon HOM05D002848 ORTHO05D003043 2.5e-06 58.9 82 41.5
GSVIVG01009860001 Vitis vinifera HOM05D002848 ORTHO05D003043 2.5e-06 58.9 79 44.3
Actinidia22990 Actinidia chinensis HOM05D002848 ORTHO05D003043 3.3e-06 58.5 78 41.0
BcaB03g12895 Brassica carinata HOM05D002848 ORTHO05D003043 3.3e-06 58.5 129 34.1
Gohir.A01G112600 Gossypium hirsutum HOM05D002848 ORTHO05D003043 3.3e-06 58.5 103 36.9
EL10Ac1g02255 Beta vulgaris HOM05D002848 ORTHO05D003043 4.3e-06 58.2 82 39.0
Gohir.A02G088501 Gossypium hirsutum HOM05D002848 ORTHO05D003043 4.3e-06 58.2 268 25.7
Nitab4.5_0000192g0040 Nicotiana tabacum HOM05D002848 ORTHO05D003043 4.3e-06 58.2 82 41.5
Sabra05G0095000 Salix brachista HOM05D002848 ORTHO05D003043 4.3e-06 58.2 71 43.7
CSS0049415 Camellia sinensis var. sinensis HOM05D002848 ORTHO05D003043 5.6e-06 57.8 256 27.0
BraA08t34900Z Brassica rapa HOM05D002848 ORTHO05D003043 7.3e-06 57.4 202 28.7
Dinv39498 Davidia involucrata HOM05D002848 ORTHO05D003043 9.5e-06 57.0 83 43.4
Nitab4.5_0000577g0100 Nicotiana tabacum HOM05D002848 ORTHO05D003043 9.5e-06 57.0 82 41.5
Potri.005G236300 Populus trichocarpa HOM05D002848 ORTHO05D003043 9.5e-06 57.0 311 27.0
Sabra05G0182700 Salix brachista HOM05D002848 ORTHO05D003043 9.5e-06 57.0 92 40.2
SalBow7G4492 Salvia bowleyana HOM05D002848 ORTHO05D003043 9.5e-06 57.0 83 38.6


User provided reference genes

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