Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025168 Vanilla planifolia HOM05D003077 ORTHO05D003354 7.8e-214 746.9 386 100.0
MBI03_g39653_MAGBIO Magnolia biondii HOM05D003077 ORTHO05D003354 1.2e-44 184.9 397 38.0
TAR628G1099 Trochodendron aralioides HOM05D003077 ORTHO05D003354 1.2e-44 184.9 433 37.0
MBI06_g35211_MAGBIO Magnolia biondii HOM05D003077 ORTHO05D003354 1.4e-42 177.9 389 38.0
TAR625G0294 Trochodendron aralioides HOM05D003077 ORTHO05D003354 4.7e-41 172.9 425 36.7
Nn1g08962 Nelumbo nucifera HOM05D003077 ORTHO05D003354 2.8e-38 163.7 384 37.8
Nn5g28434 Nelumbo nucifera HOM05D003077 ORTHO05D003354 2.8e-38 163.7 437 35.7
TAR229G0004 Trochodendron aralioides HOM05D003077 ORTHO05D003354 6.7e-32 142.5 410 35.1
Zm00001eb145640 Zea mays HOM05D003077 ORTHO05D003354 2.2e-30 137.5 405 32.3
Prupe.1G489600 Prunus persica HOM05D003077 ORTHO05D003354 3.7e-30 136.7 388 32.5
Atru.chr13.1565 Acer truncatum HOM05D003077 ORTHO05D003354 1.4e-29 134.8 392 33.2
Aqoxy5G02381 Aquilegia oxysepala HOM05D003077 ORTHO05D003354 3.1e-29 133.7 380 34.7
ClCG08G006020 Citrullus lanatus HOM05D003077 ORTHO05D003354 7.0e-29 132.5 385 34.3
VMungo1309G2236 Vigna mungo HOM05D003077 ORTHO05D003354 7.0e-29 132.5 380 33.4
CsaV3_6G034070 Cucumis sativus L. HOM05D003077 ORTHO05D003354 2.0e-28 131.0 382 34.0
MELO3C010653.2 Cucumis melo HOM05D003077 ORTHO05D003354 3.5e-28 130.2 385 33.2
Actinidia15214 Actinidia chinensis HOM05D003077 ORTHO05D003354 1.1e-26 125.2 379 33.5
PSO528G0274 Papaver somniferum HOM05D003077 ORTHO05D003354 1.1e-26 125.2 419 30.5
Sed0016256 Sechium edule HOM05D003077 ORTHO05D003354 1.5e-26 124.8 391 32.5
CANSAT25G3561 Cannabis sativa HOM05D003077 ORTHO05D003354 1.9e-26 124.4 425 30.4
MD08G1159200 Malus domestica HOM05D003077 ORTHO05D003354 4.2e-26 123.2 394 30.7
Glyma.14G154900 Glycine max HOM05D003077 ORTHO05D003354 7.2e-26 122.5 374 32.4
Gohir.A02G071200 Gossypium hirsutum HOM05D003077 ORTHO05D003354 1.2e-25 121.7 405 30.1
Ca_16606_v3 Cicer arietinum L. HOM05D003077 ORTHO05D005230 1.6e-25 121.3 378 32.8
Medtr3g088585 Medicago truncatula HOM05D003077 ORTHO05D003354 1.6e-25 121.3 372 32.0
PSO170G0953 Papaver somniferum HOM05D003077 ORTHO05D003354 1.6e-25 121.3 419 30.1
Glyma.04G245700 Glycine max HOM05D003077 ORTHO05D003354 2.1e-25 120.9 376 31.6
Manes.18G082300 Manihot esculenta HOM05D003077 ORTHO05D003354 4.7e-25 119.8 386 31.1
Phvul.009G129800 Phaseolus vulgaris HOM05D003077 ORTHO05D003354 4.7e-25 119.8 380 31.8
Sed0001846 Sechium edule HOM05D003077 ORTHO05D003354 4.7e-25 119.8 386 31.6
Ciclev10000343m.g Citrus clementina HOM05D003077 ORTHO05D003354 6.1e-25 119.4 395 31.4
FAN20G3132 Fragaria x ananassa HOM05D003077 ORTHO05D003354 6.1e-25 119.4 404 30.2
Gohir.D03G069004 Gossypium hirsutum HOM05D003077 ORTHO05D003354 6.1e-25 119.4 408 30.1
Gorai.013G107800 Gossypium raimondii HOM05D003077 ORTHO05D003354 6.1e-25 119.4 408 30.1
RcHm_v2.0_Chr6g0296701 Rosa chinensis HOM05D003077 ORTHO05D003354 6.1e-25 119.4 392 31.1
Cfa018128 Carpinus fangiana HOM05D003077 ORTHO05D003354 8.0e-25 119.0 385 31.2
Glyma.06G117400 Glycine max HOM05D003077 ORTHO05D003354 8.0e-25 119.0 390 32.3
Actinidia21280 Actinidia chinensis HOM05D003077 ORTHO05D003354 1.8e-24 117.9 379 32.7
CSS0035070 Camellia sinensis var. sinensis HOM05D003077 ORTHO05D003354 1.8e-24 117.9 388 33.5
CiPaw.16G022800 Carya illinoinensis HOM05D003077 ORTHO05D003354 1.8e-24 117.9 385 31.7
Gorai.005G087800 Gossypium raimondii HOM05D003077 ORTHO05D003354 1.8e-24 117.9 401 30.2
Ca_12646_v3 Cicer arietinum L. HOM05D003077 ORTHO05D003354 2.3e-24 117.5 396 32.8
Glyma.13G032500 Glycine max HOM05D003077 ORTHO05D003354 2.3e-24 117.5 382 32.7
Duzib093G0755 Durio zibethinus HOM05D003077 ORTHO05D003354 3.0e-24 117.1 385 30.9
Gohir.D02G078300 Gossypium hirsutum HOM05D003077 ORTHO05D003354 3.0e-24 117.1 401 30.2
FAN27G2585 Fragaria x ananassa HOM05D003077 ORTHO05D003354 4.0e-24 116.7 395 30.4
Gohir.A02G110500 Gossypium hirsutum HOM05D003077 ORTHO05D003354 4.0e-24 116.7 401 30.2
FAN24G2697 Fragaria x ananassa HOM05D003077 ORTHO05D003354 6.7e-24 115.9 408 29.2
Aqoxy2G02388 Aquilegia oxysepala HOM05D003077 ORTHO05D003354 2.0e-23 114.4 375 32.3
TWI34G0175 Tripterygium wilfordii HOM05D003077 ORTHO05D003354 2.0e-23 114.4 382 31.4
Hma1.2p1_0014F.1_g010220 Hydrangea macrophylla HOM05D003077 ORTHO05D003354 4.4e-23 113.2 385 32.2
ATR0584G207 Amborella trichopoda HOM05D003077 ORTHO05D003354 5.7e-23 112.8 383 32.1
Lj1g0018738 Lotus japonicus HOM05D003077 ORTHO05D003354 7.5e-23 112.5 372 32.0
Psat6g040480 Pisum sativum HOM05D003077 ORTHO05D003354 7.5e-23 112.5 385 31.4
Phvul.001G070500 Phaseolus vulgaris HOM05D003077 ORTHO05D003354 9.7e-23 112.1 381 32.0
Psat5g084800 Pisum sativum HOM05D003077 ORTHO05D003354 9.7e-23 112.1 327 32.7
Manes.02G168300 Manihot esculenta HOM05D003077 ORTHO05D003354 8.2e-22 109.0 395 31.4
Thecc.08G132900 Theobroma cacao HOM05D003077 ORTHO05D003354 2.4e-21 107.5 386 29.5
CiPaw.15G031400 Carya illinoinensis HOM05D003077 ORTHO05D003354 3.1e-21 107.1 379 32.2
COL.COLO4_08846 Corchorus olitorius HOM05D003077 ORTHO05D003354 5.3e-21 106.3 398 29.9
arahy.Tifrunner.gnm1.ann1.PT3H3P Arachis hypogaea HOM05D003077 ORTHO05D003354 7.0e-21 105.9 391 30.2
Lalb_Chr11g0066171 Lupinus albus HOM05D003077 ORTHO05D003354 1.2e-20 105.1 398 29.6
TWI32G1117 Tripterygium wilfordii HOM05D003077 ORTHO05D003354 1.6e-20 104.8 393 30.0
CDE08G0053 Ceratophyllum demersum HOM05D003077 ORTHO05D003354 3.5e-20 103.6 355 29.3
Lalb_Chr23g0271171 Lupinus albus HOM05D003077 ORTHO05D003354 1.7e-19 101.3 394 29.4
arahy.Tifrunner.gnm1.ann1.RUFP3A Arachis hypogaea HOM05D003077 ORTHO05D003354 5.0e-19 99.8 387 29.7
CANSAT11G0740 Cannabis sativa HOM05D003077 ORTHO05D003354 6.5e-19 99.4 348 30.5
TPR.G28812 Trifolium pratense HOM05D003077 ORTHO05D003354 6.5e-19 99.4 250 36.0
Potri.007G101201 Populus trichocarpa HOM05D003077 ORTHO05D003354 1.1e-18 98.6 358 27.7
CDE02G1774 Ceratophyllum demersum HOM05D003077 ORTHO05D003354 1.5e-18 98.2 429 28.9
VMungo0647G0503 Vigna mungo HOM05D003077 ORTHO05D003354 1.5e-18 98.2 309 33.7
GSVIVG01008808001 Vitis vinifera HOM05D003077 ORTHO05D003354 7.2e-18 95.9 368 28.3
FvH4_2g27830 Fragaria vesca HOM05D003077 ORTHO05D003354 9.4e-18 95.5 383 27.4
Medtr1g029680 Medicago truncatula HOM05D003077 ORTHO05D003354 1.2e-17 95.1 403 30.0
Potri.005G182300 Populus trichocarpa HOM05D003077 ORTHO05D003354 1.2e-17 95.1 387 28.4
FAN15G0848 Fragaria x ananassa HOM05D003077 ORTHO05D003354 1.6e-17 94.7 376 27.9
Potri.002G078800 Populus trichocarpa HOM05D003077 ORTHO05D003354 2.1e-17 94.4 382 28.8
DCAR_014371 Daucus carota HOM05D003077 ORTHO05D003354 2.7e-17 94.0 397 31.0
Dinv14687 Davidia involucrata HOM05D003077 ORTHO05D003354 2.7e-17 94.0 201 39.3
COL.COLO4_35810 Corchorus olitorius HOM05D003077 ORTHO05D003354 4.7e-17 93.2 346 29.2
Lj1g0006258 Lotus japonicus HOM05D003077 ORTHO05D003354 6.8e-16 89.4 368 32.1
Sabra02G0061700 Salix brachista HOM05D003077 ORTHO05D003354 1.2e-15 88.6 315 30.8
vmacro00865 Vaccinium macrocarpon HOM05D003077 ORTHO05D003354 1.5e-15 88.2 409 27.1
Cpa.g.sc64.169 Carica papaya HOM05D003077 ORTHO05D003354 2.6e-15 87.4 110 49.1
Nitab4.5_0001168g0100 Nicotiana tabacum HOM05D003077 ORTHO05D003354 3.4e-15 87.0 378 27.5
PGR042G0595 Punica granatum HOM05D003077 ORTHO05D003354 3.4e-15 87.0 383 28.7
Rhsim11G0071700 Rhododendron simsii HOM05D003077 ORTHO05D003354 3.4e-15 87.0 275 32.0
DCAR_016656 Daucus carota HOM05D003077 ORTHO05D003354 5.7e-15 86.3 383 29.5
Peaxi162Scf00066g00134 Petunia axillaris HOM05D003077 ORTHO05D003354 5.7e-15 86.3 395 28.4
VMungo1215G2387 Vigna mungo HOM05D003077 ORTHO05D003354 5.7e-15 86.3 93 52.7
Lalb_Chr10g0101491 Lupinus albus HOM05D003077 ORTHO05D003354 9.8e-15 85.5 363 28.9
Oeu040401.1 Olea europaea HOM05D003077 ORTHO05D003354 9.8e-15 85.5 384 30.2
SEGI_13465 Sequoiadendron giganteum HOM05D003077 ORTHO05D003354 9.8e-15 85.5 384 30.5
Sp5g32490 Schrenkiella parvula HOM05D003077 ORTHO05D003354 1.3e-14 85.1 95 48.4
Sc02g0004730 Simmondsia chinensis HOM05D003077 ORTHO05D003354 2.2e-14 84.3 365 27.4
Sopen11g001130 Solanum pennellii HOM05D003077 ORTHO05D003354 2.2e-14 84.3 414 28.0
Sabra05G0138200 Salix brachista HOM05D003077 ORTHO05D003354 2.8e-14 84.0 330 29.1
Solyc11g005130.2 Solanum lycopersicum HOM05D003077 ORTHO05D003354 2.8e-14 84.0 414 28.0
Thecc.01G136900 Theobroma cacao HOM05D003077 ORTHO05D003354 2.8e-14 84.0 347 28.2
THA.LOC104813681 Tarenaya hassleriana HOM05D003077 ORTHO05D003354 3.7e-14 83.6 362 29.0
Nitab4.5_0003863g0040 Nicotiana tabacum HOM05D003077 ORTHO05D003354 4.8e-14 83.2 400 27.5
CSS0019818 Camellia sinensis var. sinensis HOM05D003077 ORTHO05D003354 6.3e-14 82.8 331 30.2
SHI09202 Sapria himalayana HOM05D003077 ORTHO05D003354 6.3e-14 82.8 97 46.4
BcaC08g47619 Brassica carinata HOM05D003077 ORTHO05D003354 1.1e-13 82.0 110 48.2
BolC6t40165H Brassica oleracea HOM05D003077 ORTHO05D003354 1.1e-13 82.0 110 48.2
Sc15g0007510 Simmondsia chinensis HOM05D003077 ORTHO05D003354 1.4e-13 81.6 385 28.3
Aa31LG4G7340 Aethionema arabicum HOM05D003077 ORTHO05D003354 4.1e-13 80.1 367 28.9
Ah.05g169130 Amaranthus hybridus HOM05D003077 ORTHO05D003354 5.4e-13 79.7 370 29.5
Aa31LG7G5590 Aethionema arabicum HOM05D003077 ORTHO05D003354 1.2e-12 78.6 101 49.5
BolC6t38271H Brassica oleracea HOM05D003077 ORTHO05D003354 1.6e-12 78.2 350 28.9
Duzib264G0391 Durio zibethinus HOM05D003077 ORTHO05D003354 1.6e-12 78.2 348 27.0
Migut.C01065 Erythranthe guttata HOM05D003077 ORTHO05D003354 1.6e-12 78.2 403 27.0
A02p21210 Brassica napus HOM05D003077 ORTHO05D003354 2.0e-12 77.8 132 43.2
C06p31320 Brassica napus HOM05D003077 ORTHO05D003354 2.7e-12 77.4 358 29.3
Carub.0001s2104 Capsella rubella HOM05D003077 ORTHO05D003354 2.7e-12 77.4 350 28.0
Lsat_1_v5_gn_6_110261 Lactuca sativa HOM05D003077 ORTHO05D003354 2.7e-12 77.4 393 28.0
BraA07t30449Z Brassica rapa HOM05D003077 ORTHO05D003354 3.5e-12 77.0 350 28.6
A07p28050 Brassica napus HOM05D003077 ORTHO05D003354 4.5e-12 76.6 347 30.3
BraA02t07140Z Brassica rapa HOM05D003077 ORTHO05D003354 4.5e-12 76.6 114 46.5
C02p34450 Brassica napus HOM05D003077 ORTHO05D003354 5.9e-12 76.3 130 43.1
AT1G21610 Arabidopsis thaliana HOM05D003077 ORTHO05D003354 7.7e-12 75.9 349 26.9
BcaC03g15730 Brassica carinata HOM05D003077 ORTHO05D003354 7.7e-12 75.9 130 43.1
BolC2t09477H Brassica oleracea HOM05D003077 ORTHO05D003354 7.7e-12 75.9 130 43.1
CAN.G716.6 Capsicum annuum HOM05D003077 ORTHO05D003354 7.7e-12 75.9 381 26.5
CARHR021970 Cardamine hirsuta HOM05D003077 ORTHO05D003354 1.3e-11 75.1 353 28.6
ECA246G2541 Erigeron canadensis HOM05D003077 ORTHO05D003354 2.3e-11 74.3 414 28.3
SalBow7G0800 Salvia bowleyana HOM05D003077 ORTHO05D003354 3.8e-11 73.6 395 27.6
SalBow7G2753 Salvia bowleyana HOM05D003077 ORTHO05D003354 3.8e-11 73.6 395 27.3
Migut.N03265 Erythranthe guttata HOM05D003077 ORTHO05D003354 5.0e-11 73.2 389 25.7
EL10Ac1g01345 Beta vulgaris HOM05D003077 ORTHO05D003354 8.6e-11 72.4 388 26.3
Cc10_g12800 Coffea canephora HOM05D003077 ORTHO05D003354 1.5e-10 71.6 423 26.2
HanXRQChr05g0149791 Helianthus annuus HOM05D003077 ORTHO05D003354 1.9e-10 71.2 389 28.8
THA.LOC104812084 Tarenaya hassleriana HOM05D003077 ORTHO05D003354 2.5e-10 70.9 373 26.8
AL1G34750 Arabidopsis lyrata HOM05D003077 ORTHO05D003354 3.3e-10 70.5 351 27.4
CSS0012408 Camellia sinensis var. sinensis HOM05D003077 ORTHO05D003354 3.3e-10 70.5 312 29.2
Lsat_1_v5_gn_1_7800 Lactuca sativa HOM05D003077 ORTHO05D003354 5.5e-10 69.7 381 25.7
BcaC08g45481 Brassica carinata HOM05D003077 ORTHO05D003354 9.5e-10 68.9 370 27.6
BcaB05g25039 Brassica carinata HOM05D003077 ORTHO05D003354 1.6e-09 68.2 378 28.3
C06p51470 Brassica napus HOM05D003077 ORTHO05D003354 1.6e-09 68.2 364 28.8
Zm00001eb366130 Zea mays HOM05D003077 ORTHO05D003354 1.6e-09 68.2 182 28.6
BraA07t31806Z Brassica rapa HOM05D003077 ORTHO05D003354 2.1e-09 67.8 364 28.6
RcHm_v2.0_Chr6g0293421 Rosa chinensis HOM05D003077 ORTHO05D003354 2.1e-09 67.8 278 29.9
A07p42850 Brassica napus HOM05D003077 ORTHO05D003354 2.8e-09 67.4 364 28.6
SGA_v2.0_scaffold24G10423 Striga asiatica HOM05D003077 ORTHO05D003354 3.6e-09 67.0 411 26.0
Duzib187G0497 Durio zibethinus HOM05D003077 ORTHO05D003354 4.7e-09 66.6 315 26.7
MSTRG.25361 Avicennia marina HOM05D003077 ORTHO05D003354 6.1e-09 66.2 395 26.6
CSS0038864 Camellia sinensis var. sinensis HOM05D003077 ORTHO05D003354 6.1e-09 66.2 333 27.6
Sp1g19140 Schrenkiella parvula HOM05D003077 ORTHO05D003354 6.1e-09 66.2 356 25.8
Thhalv10018217m.g Eutrema salsugineum HOM05D003077 ORTHO05D003354 8.0e-09 65.9 360 27.8
Oeu033990.1 Olea europaea HOM05D003077 ORTHO05D003354 1.4e-08 65.1 114 40.4
BcaB02g07101 Brassica carinata HOM05D003077 ORTHO05D003354 1.8e-08 64.7 365 27.1
SEGI_22624 Sequoiadendron giganteum HOM05D003077 ORTHO05D003354 3.0e-08 63.9 104 41.3
Atru.chr4.996 Acer truncatum HOM05D003077 ORTHO05D003354 6.8e-08 62.8 285 26.7
TPR.G30547 Trifolium pratense HOM05D003077 ORTHO05D003354 1.2e-07 62.0 321 28.0
Sabra07G0083500 Salix brachista HOM05D003077 ORTHO05D003354 9.8e-07 58.9 225 26.7
Mapoly0042s0059 Marchantia polymorpha HOM05D003077 ORTHO05D003354 1.3e-06 58.5 397 29.7
MSTRG.1414 Avicennia marina HOM05D003077 ORTHO05D003354 1.7e-06 58.2 401 25.7
Pp3c13_4490 Physcomitrium patens HOM05D003077 ORTHO05D003354 3.7e-06 57.0 385 26.5
Dinv14686 Davidia involucrata HOM05D003077 ORTHO05D003354 4.9e-06 56.6 154 31.2
SGA_v2.0_scaffold81G26136 Striga asiatica HOM05D003077 ORTHO05D003354 4.9e-06 56.6 418 25.8
Duzib264G0967 Durio zibethinus HOM05D003077 ORTHO05D003354 6.3e-06 56.2 212 28.8
AT1G77310 Arabidopsis thaliana HOM05D003077 ORTHO05D003354 8.3e-06 55.8 375 28.0


User provided reference genes

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