Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025104 Vanilla planifolia HOM05D006841 ORTHO05D008607 4.4e-239 830.9 413 100.0
TAR369G0096 Trochodendron aralioides HOM05D006841 ORTHO05D008607 3.9e-118 429.1 382 57.3
TAR636G1839 Trochodendron aralioides HOM05D006841 ORTHO05D008607 1.9e-117 426.8 421 53.7
MBI15_g21765_MAGBIO Magnolia biondii HOM05D006841 ORTHO05D008607 4.3e-117 425.6 360 60.0
CiPaw.14G056400 Carya illinoinensis HOM05D006841 ORTHO05D008607 5.6e-117 425.2 409 55.5
MD03G1062600 Malus domestica HOM05D006841 ORTHO05D008607 4.7e-116 422.2 378 56.9
FAN21G2904 Fragaria x ananassa HOM05D006841 ORTHO05D008607 8.9e-115 417.9 388 55.4
Potri.009G075200 Populus trichocarpa HOM05D006841 ORTHO05D008607 2.0e-114 416.8 381 56.4
ClCG02G019390 Citrullus lanatus HOM05D006841 ORTHO05D008607 2.6e-114 416.4 342 59.4
MELO3C026835.2 Cucumis melo HOM05D006841 ORTHO05D008607 2.6e-114 416.4 399 54.1
Gorai.009G112400 Gossypium raimondii HOM05D006841 ORTHO05D008607 2.6e-114 416.4 388 54.9
Sed0019546 Sechium edule HOM05D006841 ORTHO05D008607 3.4e-114 416.0 342 59.9
TWI79G1747 Tripterygium wilfordii HOM05D006841 ORTHO05D008607 5.8e-114 415.2 379 55.4
Gohir.A05G108000 Gossypium hirsutum HOM05D006841 ORTHO05D008607 7.5e-114 414.8 342 59.6
Manes.02G217600 Manihot esculenta HOM05D006841 ORTHO05D008607 9.8e-114 414.5 342 59.9
Eucgr.B02230 Eucalyptus grandis HOM05D006841 ORTHO05D008607 1.3e-113 414.1 357 58.5
MD11G1066200 Malus domestica HOM05D006841 ORTHO05D008607 1.3e-113 414.1 342 59.6
Duzib168G0722 Durio zibethinus HOM05D006841 ORTHO05D008607 1.7e-113 413.7 342 59.4
FAN11G0941 Fragaria x ananassa HOM05D006841 ORTHO05D008607 1.7e-113 413.7 388 54.9
FAN25G3694 Fragaria x ananassa HOM05D006841 ORTHO05D008607 1.7e-113 413.7 388 55.2
Dinv28672 Davidia involucrata HOM05D006841 ORTHO05D008607 2.2e-113 413.3 350 58.6
FvH4_3g39290 Fragaria vesca HOM05D006841 ORTHO05D008607 2.9e-113 412.9 388 54.9
Ciclev10028251m.g Citrus clementina HOM05D006841 ORTHO05D008607 3.7e-113 412.5 385 57.1
Gohir.D05G108200 Gossypium hirsutum HOM05D006841 ORTHO05D008607 4.9e-113 412.1 388 54.4
Prupe.6G052600 Prunus persica HOM05D006841 ORTHO05D008607 4.9e-113 412.1 342 59.1
Thecc.09G353800 Theobroma cacao HOM05D006841 ORTHO05D008607 6.4e-113 411.8 342 59.1
CDE06G2104 Ceratophyllum demersum HOM05D006841 ORTHO05D008607 8.3e-113 411.4 354 58.2
COL.COLO4_11072 Corchorus olitorius HOM05D006841 ORTHO05D008607 8.3e-113 411.4 342 59.6
CsaV3_6G016010 Cucumis sativus L. HOM05D006841 ORTHO05D008607 8.3e-113 411.4 342 59.4
RcHm_v2.0_Chr5g0070721 Rosa chinensis HOM05D006841 ORTHO05D008607 1.1e-112 411.0 342 59.4
Sabra09G0057100 Salix brachista HOM05D006841 ORTHO05D008607 1.4e-112 410.6 381 56.2
Aqoxy1G01268 Aquilegia oxysepala HOM05D006841 ORTHO05D008607 2.4e-112 409.8 347 59.1
Duzib170G1072 Durio zibethinus HOM05D006841 ORTHO05D008607 5.4e-112 408.7 342 58.5
QL01p039597 Quercus lobata HOM05D006841 ORTHO05D008607 7.0e-112 408.3 337 60.5
Phvul.006G071400 Phaseolus vulgaris HOM05D006841 ORTHO05D008607 2.0e-111 406.8 373 55.5
VMungo0540G0160 Vigna mungo HOM05D006841 ORTHO05D008607 2.7e-111 406.4 373 56.0
arahy.Tifrunner.gnm1.ann1.1QT3IR Arachis hypogaea HOM05D006841 ORTHO05D008607 7.8e-111 404.8 343 58.0
Os05g0353300 Oryza sativa ssp. japonica HOM05D006841 ORTHO05D008607 1.0e-110 404.4 377 57.8
Lj2A1088G41 Lonicera japonica HOM05D006841 ORTHO05D008607 1.3e-110 404.1 386 54.7
Lj6g0024894 Lotus japonicus HOM05D006841 ORTHO05D008607 1.3e-110 404.1 335 59.1
Zm00001eb286480 Zea mays HOM05D006841 ORTHO05D008607 1.3e-110 404.1 334 60.8
Atru.chr3.4145 Acer truncatum HOM05D006841 ORTHO05D008607 2.3e-110 403.3 384 54.7
arahy.Tifrunner.gnm1.ann1.UR06JS Arachis hypogaea HOM05D006841 ORTHO05D008607 2.3e-110 403.3 343 57.4
Glyma.11G167300 Glycine max HOM05D006841 ORTHO05D008607 5.0e-110 402.1 374 55.6
Lalb_Chr18g0051231 Lupinus albus HOM05D006841 ORTHO05D008607 8.6e-110 401.4 342 57.3
HanXRQChr01g0011601 Helianthus annuus HOM05D006841 ORTHO05D008607 2.5e-109 399.8 344 57.6
PSO017G2874 Papaver somniferum HOM05D006841 ORTHO05D008607 2.5e-109 399.8 345 58.0
CiPaw.13G073200 Carya illinoinensis HOM05D006841 ORTHO05D008607 3.3e-109 399.4 391 53.7
Glyma.18G059800 Glycine max HOM05D006841 ORTHO05D008607 3.3e-109 399.4 373 53.9
MSTRG.12683 Avicennia marina HOM05D006841 ORTHO05D008607 1.2e-108 397.5 344 58.1
ECA248G2088 Erigeron canadensis HOM05D006841 ORTHO05D008607 1.6e-108 397.1 344 56.1
Lsat_1_v5_gn_5_173260 Lactuca sativa HOM05D006841 ORTHO05D008607 1.6e-108 397.1 342 56.4
CSS0042618 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 2.1e-108 396.7 372 55.1
PSO349G0316 Papaver somniferum HOM05D006841 ORTHO05D008607 2.1e-108 396.7 346 58.4
CANSAT54G0320 Cannabis sativa HOM05D006841 ORTHO05D008607 3.6e-108 396.0 342 56.7
Haze_24381 Corylus avellana HOM05D006841 ORTHO05D008607 3.6e-108 396.0 445 50.1
SalBow2G2391 Salvia bowleyana HOM05D006841 ORTHO05D008607 4.7e-108 395.6 342 59.1
THA.LOC104800754 Tarenaya hassleriana HOM05D006841 ORTHO05D008607 1.4e-107 394.0 363 57.0
Ah.15g096690 Amaranthus hybridus HOM05D006841 ORTHO05D008607 3.1e-107 392.9 365 55.9
CAN.G707.10 Capsicum annuum HOM05D006841 ORTHO05D008607 3.1e-107 392.9 386 53.4
PGR102G0989 Punica granatum HOM05D006841 ORTHO05D008607 4.0e-107 392.5 340 56.5
Solyc05g012140.3 Solanum lycopersicum HOM05D006841 ORTHO05D008607 4.0e-107 392.5 375 53.6
CARHR123400 Cardamine hirsuta HOM05D006841 ORTHO05D008607 5.2e-107 392.1 411 52.1
Sopen05g006930 Solanum pennellii HOM05D006841 ORTHO05D008607 6.8e-107 391.7 378 53.7
Psat5g157440 Pisum sativum HOM05D006841 ORTHO05D008607 1.5e-106 390.6 378 52.4
TPR.G32925 Trifolium pratense HOM05D006841 ORTHO05D008607 1.5e-106 390.6 376 53.7
Carub.0004s1120 Capsella rubella HOM05D006841 ORTHO05D008607 2.0e-106 390.2 342 55.8
Sc06g0008150 Simmondsia chinensis HOM05D006841 ORTHO05D008607 3.4e-106 389.4 351 55.6
C04p58980 Brassica napus HOM05D006841 ORTHO05D008607 4.4e-106 389.0 408 51.5
BolC4t27410H Brassica oleracea HOM05D006841 ORTHO05D008607 9.8e-106 387.9 364 55.5
Ca_14982_v3 Cicer arietinum L. HOM05D006841 ORTHO05D008607 1.3e-105 387.5 336 56.8
PGSC0003DMG401028313 Solanum tuberosum HOM05D006841 ORTHO05D008607 1.3e-105 387.5 378 53.7
AL4G24870 Arabidopsis lyrata HOM05D006841 ORTHO05D008607 1.7e-105 387.1 338 57.1
EL10Ac7g15887 Beta vulgaris HOM05D006841 ORTHO05D008607 2.2e-105 386.7 351 55.6
AT2G30100 Arabidopsis thaliana HOM05D006841 ORTHO05D008607 2.9e-105 386.3 339 57.5
vmacro14612 Vaccinium macrocarpon HOM05D006841 ORTHO05D008607 2.9e-105 386.3 342 56.7
Medtr3g465390 Medicago truncatula HOM05D006841 ORTHO05D008607 8.3e-105 384.8 377 51.2
Thhalv10016546m.g Eutrema salsugineum HOM05D006841 ORTHO05D008607 3.2e-104 382.9 337 56.4
Ah.08g215320 Amaranthus hybridus HOM05D006841 ORTHO05D008607 5.4e-104 382.1 346 55.8
Aa31LG5G6580 Aethionema arabicum HOM05D006841 ORTHO05D008607 7.1e-104 381.7 348 56.6
Peaxi162Scf01324g00238 Petunia axillaris HOM05D006841 ORTHO05D008607 7.1e-104 381.7 335 57.0
Actinidia34467 Actinidia chinensis HOM05D006841 ORTHO05D008607 1.2e-103 380.9 373 53.1
Oeu018490.1 Olea europaea HOM05D006841 ORTHO05D008607 1.2e-103 380.9 342 55.8
Sp4g12660 Schrenkiella parvula HOM05D006841 ORTHO05D008607 1.2e-103 380.9 343 56.0
BcaC02g08056 Brassica carinata HOM05D006841 ORTHO05D008607 6.0e-103 378.6 351 55.3
AUR62009700 Chenopodium quinoa HOM05D006841 ORTHO05D008607 1.3e-102 377.5 351 54.4
Migut.N00773 Erythranthe guttata HOM05D006841 ORTHO05D008607 1.3e-102 377.5 342 55.6
Rhsim01G0239400 Rhododendron simsii HOM05D006841 ORTHO05D008607 1.3e-102 377.5 344 56.1
BraA04t17817Z Brassica rapa HOM05D006841 ORTHO05D008607 1.7e-102 377.1 368 53.8
A04p22780 Brassica napus HOM05D006841 ORTHO05D008607 2.3e-102 376.7 344 55.2
SGA_v2.0_scaffold104G30129 Striga asiatica HOM05D006841 ORTHO05D008607 5.1e-102 375.6 343 56.6
Hund05042 Selenicereus undatus HOM05D006841 ORTHO05D008607 1.5e-101 374.0 351 53.6
AUR62036246 Chenopodium quinoa HOM05D006841 ORTHO05D008607 7.3e-101 371.7 351 53.8
unitig_94.g28363 Utricularia gibba HOM05D006841 ORTHO05D008607 9.5e-101 371.3 342 54.4
ATR0174G035 Amborella trichopoda HOM05D006841 ORTHO05D008607 8.1e-100 368.2 343 56.3
CSS0014141 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 6.8e-99 365.2 372 51.9
AL59U10050 Arabidopsis lyrata HOM05D006841 ORTHO05D008607 3.4e-98 362.8 313 58.1
GSVIVG01024686001 Vitis vinifera HOM05D006841 ORTHO05D008607 4.8e-84 315.8 310 53.2
Actinidia23875 Actinidia chinensis HOM05D006841 ORTHO05D008607 3.8e-81 306.2 294 53.1
Cc01_g14600 Coffea canephora HOM05D006841 ORTHO05D008607 1.7e-78 297.4 310 49.4
SEGI_38470 Sequoiadendron giganteum HOM05D006841 ORTHO05D008607 4.6e-71 272.7 369 38.2
DCAR_007349 Daucus carota HOM05D006841 ORTHO05D008607 1.3e-70 271.2 266 51.9
Nn2g10947 Nelumbo nucifera HOM05D006841 ORTHO05D008607 5.3e-67 259.2 189 64.0
Mapoly0068s0098 Marchantia polymorpha HOM05D006841 ORTHO05D008607 2.5e-61 240.4 334 38.6
Nn2g13216 Nelumbo nucifera HOM05D006841 ORTHO05D008607 2.6e-58 230.3 182 62.6
CSS0012316 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 1.0e-57 228.4 322 40.7
Pp3c12_8330 Physcomitrium patens HOM05D006841 ORTHO05D008607 2.5e-56 223.8 301 39.2
Cpa.g.sc2.394 Carica papaya HOM05D006841 ORTHO05D008607 8.7e-54 215.3 153 66.7
SMO304G0125 Selaginella moellendorffii HOM05D006841 ORTHO05D008607 6.9e-51 205.7 291 39.2
MD11G1194000 Malus domestica HOM05D006841 ORTHO05D008607 7.7e-50 202.2 134 70.1
Hma1.2p1_0146F.1_g065520 Hydrangea macrophylla HOM05D006841 ORTHO05D008607 2.1e-39 167.5 168 49.4
AagrBONN_evm.TU.Sc2ySwM_117.787 Anthoceros agrestis HOM05D006841 ORTHO05D008607 1.0e-33 148.7 244 34.4
Oeu034518.1 Olea europaea HOM05D006841 ORTHO05D008607 1.7e-28 131.3 151 47.0
Oeu034514.1 Olea europaea HOM05D006841 ORTHO05D008607 3.7e-28 130.2 129 51.2
VMungo0331G0799 Vigna mungo HOM05D000172 ORTHO05D004529 2.8e-20 104.0 111 46.8
Oeu034210.1 Olea europaea HOM05D009051 ORTHO05D000140 3.8e-17 93.6 107 43.0


User provided reference genes

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