Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 1.0e-97 360.1 193 100.0
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.1e-43 180.6 201 54.7
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 2.5e-43 179.5 197 55.3
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 2.7e-42 176.0 202 53.0
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 6.8e-41 171.4 197 50.8
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 8.8e-41 171.0 202 53.0
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 1.2e-40 170.6 196 51.0
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 1.2e-40 170.6 198 52.5
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 5.7e-40 168.3 201 52.7
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 3.7e-39 165.6 196 51.0
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 4.9e-39 165.2 196 49.5
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 1.1e-38 164.1 215 50.2
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 2.4e-38 162.9 205 51.2
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 5.4e-38 161.8 200 51.0
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 5.4e-38 161.8 218 49.5
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 7.0e-38 161.4 194 52.1
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 1.6e-37 160.2 193 53.4
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.6e-37 160.2 211 50.7
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 2.7e-37 159.5 195 50.3
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.7e-37 159.5 195 50.8
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 2.7e-37 159.5 192 51.6
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 1.3e-36 157.1 196 49.5
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.7e-36 156.8 195 50.3
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 1.7e-36 156.8 194 47.9
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 1.1e-35 154.1 211 45.5
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 9.5e-35 151.0 195 45.6
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 9.5e-35 151.0 196 48.0
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.6e-34 150.2 198 48.5
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 2.1e-34 149.8 193 48.7
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 2.1e-34 149.8 207 47.8
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.1e-34 149.8 194 49.0
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.1e-34 149.8 192 46.9
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.8e-34 149.4 217 46.5
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 3.6e-34 149.1 209 46.9
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 3.6e-34 149.1 208 47.6
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 4.7e-34 148.7 219 47.5
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 8.0e-34 147.9 191 46.6
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 8.0e-34 147.9 191 48.2
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 8.0e-34 147.9 211 46.4
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 1.0e-33 147.5 192 46.9
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 1.4e-33 147.1 192 45.8
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 1.4e-33 147.1 223 46.2
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 1.4e-33 147.1 195 48.2
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 1.8e-33 146.7 197 47.7
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 2.3e-33 146.4 192 46.9
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 4.0e-33 145.6 197 46.7
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 5.2e-33 145.2 197 48.2
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 5.2e-33 145.2 195 46.2
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 8.9e-33 144.4 194 48.5
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 8.9e-33 144.4 194 48.5
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 8.9e-33 144.4 194 48.5
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.2e-32 144.1 192 47.4
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 1.2e-32 144.1 218 47.7
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.2e-32 144.1 200 46.5
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 3.4e-32 142.5 209 45.0
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 4.4e-32 142.1 218 45.9
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 5.7e-32 141.7 193 47.2
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 7.5e-32 141.4 197 46.7
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 7.5e-32 141.4 197 46.2
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 9.8e-32 141.0 192 46.4
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 9.8e-32 141.0 215 47.0
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 9.8e-32 141.0 193 44.6
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 9.8e-32 141.0 199 49.2
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.3e-31 140.6 215 46.5
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 1.7e-31 140.2 216 43.1
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 1.7e-31 140.2 194 46.4
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 1.7e-31 140.2 195 45.6
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.7e-31 140.2 204 44.6
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.7e-31 140.2 219 46.1
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 3.7e-31 139.0 230 41.3
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.4e-30 137.1 197 47.2
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 1.4e-30 137.1 216 42.6
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 1.4e-30 137.1 216 41.7
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 1.4e-30 137.1 215 44.7
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 2.4e-30 136.3 219 42.5
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 3.2e-30 136.0 223 44.4
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 5.4e-30 135.2 193 46.6
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 5.4e-30 135.2 200 45.0
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 5.4e-30 135.2 198 48.5
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 5.4e-30 135.2 197 46.2
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 1.6e-29 133.7 196 44.4
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 2.0e-29 133.3 217 41.5
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 3.5e-29 132.5 197 47.7
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 3.5e-29 132.5 198 48.5
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 4.6e-29 132.1 192 43.8
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 5.9e-29 131.7 206 44.2
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 5.9e-29 131.7 212 41.5
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.9e-29 131.7 197 47.7
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 7.8e-29 131.3 202 43.1
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 2.3e-28 129.8 206 44.2
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 2.9e-28 129.4 213 39.4
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 5.0e-28 128.6 194 45.9
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 8.6e-28 127.9 192 44.8
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 1.5e-27 127.1 175 48.0
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 1.9e-27 126.7 211 41.2
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 4.3e-27 125.6 211 43.6
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 4.3e-27 125.6 193 45.1
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 7.3e-27 124.8 168 45.8
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 1.2e-26 124.0 208 43.3
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 1.2e-26 124.0 208 42.8
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 1.6e-26 123.6 181 45.3
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.1e-26 123.2 193 47.2
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.1e-26 123.2 193 47.2
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 2.8e-26 122.9 222 40.1
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 3.6e-26 122.5 216 40.7
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 6.1e-26 121.7 193 46.6
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 8.0e-26 121.3 193 44.0
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 1.0e-25 120.9 225 38.7
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 1.4e-25 120.6 214 38.8
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.8e-25 120.2 193 40.9
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.3e-25 119.8 197 45.7
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 5.2e-25 118.6 181 44.2
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 8.9e-25 117.9 181 46.4
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 2.6e-24 116.3 177 44.6
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 3.4e-24 115.9 201 41.8
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 4.4e-24 115.5 177 44.6
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 1.3e-23 114.0 215 40.9
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 2.9e-23 112.8 184 40.8
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 3.7e-23 112.5 198 41.9
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 3.7e-23 112.5 218 37.2
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.7e-23 112.5 199 42.7
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 6.4e-23 111.7 189 39.2
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 6.4e-23 111.7 213 40.4
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 2.4e-22 109.8 173 45.1
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 3.2e-22 109.4 249 35.3
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 4.1e-22 109.0 188 38.3
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 2.0e-21 106.7 189 39.2
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 2.0e-21 106.7 218 36.7
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 3.5e-21 105.9 196 37.8
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 3.5e-21 105.9 189 38.6
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 4.6e-21 105.5 193 37.8
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 6.0e-21 105.1 236 33.5
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 6.0e-21 105.1 196 38.3
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 7.8e-21 104.8 197 40.1
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 1.7e-20 103.6 206 38.8
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 2.3e-20 103.2 164 42.7
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 3.0e-20 102.8 192 37.5
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 3.0e-20 102.8 192 37.5
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 3.0e-20 102.8 192 37.5
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 1.1e-19 100.9 190 36.3
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 3.3e-19 99.4 191 40.8
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 4.3e-19 99.0 194 35.6
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 4.3e-19 99.0 183 37.7
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 2.1e-18 96.7 187 39.0
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 2.1e-18 96.7 187 39.0
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.1e-18 96.7 196 32.7
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 2.1e-18 96.7 206 35.4
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 6.2e-18 95.1 201 32.8
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 8.1e-18 94.7 184 37.0
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 8.1e-18 94.7 205 33.7
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 1.1e-17 94.4 248 32.7
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 1.4e-17 94.0 207 33.3
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 1.8e-17 93.6 182 36.8
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 1.8e-17 93.6 182 36.8
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 2.3e-17 93.2 193 36.8
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 1.5e-16 90.5 111 50.5
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 4.4e-16 89.0 231 33.8
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 7.5e-16 88.2 175 40.6
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 1.7e-15 87.0 77 63.6
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 6.4e-15 85.1 201 38.8
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 3.2e-14 82.8 165 33.9
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 7.1e-14 81.6 106 49.1
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 1.6e-13 80.5 161 36.6
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.7e-13 79.7 117 42.7
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 3.0e-12 76.3 75 58.7
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.3e-11 72.8 191 35.6
Os02g0505500 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 9.5e-11 71.2 215 33.0
CDE07G0150 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.8e-09 67.0 118 36.4
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 4.0e-09 65.9 193 34.2
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 5.2e-09 65.5 194 32.0
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 4.4e-08 62.4 194 30.9
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 5.8e-08 62.0 182 31.9
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 1.3e-07 60.8 184 31.0
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 2.9e-07 59.7 161 36.6
Zm00001eb359900 Zea mays HOM05D015480 ORTHO05D019326 2.9e-07 59.7 197 28.4
Os09g0511300 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 3.7e-07 59.3 174 30.5
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 6.4e-07 58.5 196 29.6
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 1.4e-06 57.4 190 29.5
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.4e-06 57.4 182 32.4
Oeu062519.1 Olea europaea HOM05D051843 ORTHO05D004573 1.9e-06 57.0 175 30.9
EL10Ac6g13908 Beta vulgaris HOM05D029470 ORTHO05D026515 9.2e-06 54.7 209 29.2


User provided reference genes

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