Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025080 Vanilla planifolia HOM05D001127 ORTHO05D012710 1.5e-52 209.5 130 100.0
HPP92_025065 Vanilla planifolia HOM05D001127 ORTHO05D002230 1.7e-32 142.9 95 83.2
HPP92_025070 Vanilla planifolia HOM05D001127 ORTHO05D012710 1.9e-26 122.9 133 58.6
MBI14_g45856_MAGBIO Magnolia biondii HOM05D001127 ORTHO05D002230 2.6e-12 75.9 103 49.5
Phvul.007G005500 Phaseolus vulgaris HOM05D001127 ORTHO05D002230 2.6e-12 75.9 91 50.5
Glyma.10G294700 Glycine max HOM05D001127 ORTHO05D002230 4.4e-12 75.1 107 46.7
Lj5g0024475 Lotus japonicus HOM05D001127 ORTHO05D002230 4.4e-12 75.1 97 48.5
Nn2g10591 Nelumbo nucifera HOM05D001127 ORTHO05D002230 4.4e-12 75.1 96 54.2
Ah.10g033120 Amaranthus hybridus HOM05D001127 ORTHO05D002230 5.8e-12 74.7 97 48.5
GSVIVG01032641001 Vitis vinifera HOM05D001127 ORTHO05D002230 5.8e-12 74.7 96 49.0
VMungo0720G2317 Vigna mungo HOM05D001127 ORTHO05D002230 7.6e-12 74.3 97 49.5
GSVIVG01025565001 Vitis vinifera HOM05D001127 ORTHO05D002230 7.6e-12 74.3 97 51.5
Thecc.05G051300 Theobroma cacao HOM05D001127 ORTHO05D002230 9.9e-12 73.9 96 51.0
AUR62041621 Chenopodium quinoa HOM05D001127 ORTHO05D002230 1.7e-11 73.2 97 46.4
TPR.G35658 Trifolium pratense HOM05D001127 ORTHO05D002230 1.7e-11 73.2 93 45.2
ATR0594G169 Amborella trichopoda HOM05D001127 ORTHO05D002230 2.2e-11 72.8 100 49.0
TAR369G1035 Trochodendron aralioides HOM05D001127 ORTHO05D002230 2.9e-11 72.4 99 49.5
Ca_02303_v3 Cicer arietinum L. HOM05D001127 ORTHO05D002230 3.8e-11 72.0 95 48.4
Sopen04g004720 Solanum pennellii HOM05D001127 ORTHO05D002230 6.4e-11 71.2 96 45.8
CiPaw.02G177900 Carya illinoinensis HOM05D001127 ORTHO05D002230 8.4e-11 70.9 92 48.9
ClCG02G013750 Citrullus lanatus HOM05D001127 ORTHO05D002230 8.4e-11 70.9 97 48.5
Cc09_g02300 Coffea canephora HOM05D001127 ORTHO05D002230 8.4e-11 70.9 97 45.4
CsaV3_5G006420 Cucumis sativus L. HOM05D001127 ORTHO05D002230 8.4e-11 70.9 107 46.7
Oeu057251.2 Olea europaea HOM05D001127 ORTHO05D002230 8.4e-11 70.9 95 48.4
HPP92_019799 Vanilla planifolia HOM05D001127 ORTHO05D002230 8.4e-11 70.9 97 49.5
AUR62035999 Chenopodium quinoa HOM05D001127 ORTHO05D002230 1.1e-10 70.5 97 44.3
Manes.10G040200 Manihot esculenta HOM05D001127 ORTHO05D002230 1.1e-10 70.5 96 46.9
Sopen04g019660 Solanum pennellii HOM05D001127 ORTHO05D012710 1.1e-10 70.5 96 47.9
SGA_v2.0_scaffold329G48854 Striga asiatica HOM05D001127 ORTHO05D002230 1.1e-10 70.5 101 47.5
CSS0014447 Camellia sinensis var. sinensis HOM05D001127 ORTHO05D002230 1.4e-10 70.1 97 46.4
CSS0018774 Camellia sinensis var. sinensis HOM05D001127 ORTHO05D002230 1.9e-10 69.7 97 46.4
Potri.010G215000 Populus trichocarpa HOM05D001127 ORTHO05D002230 1.9e-10 69.7 97 46.4
MELO3C011716.2 Cucumis melo HOM05D001127 ORTHO05D002230 2.4e-10 69.3 107 45.8
Potri.008G046600 Populus trichocarpa HOM05D001127 ORTHO05D002230 2.4e-10 69.3 98 46.9
Dinv35690 Davidia involucrata HOM05D001127 ORTHO05D002230 3.2e-10 68.9 96 47.9
Solyc04g009560.3 Solanum lycopersicum HOM05D001127 ORTHO05D002230 3.2e-10 68.9 96 44.8
Medtr1g067150 Medicago truncatula HOM05D001127 ORTHO05D002230 4.2e-10 68.6 94 45.7
Sabra08G0032900 Salix brachista HOM05D001127 ORTHO05D002230 4.2e-10 68.6 98 44.9
Zm00001eb289920 Zea mays HOM05D001127 ORTHO05D002230 4.2e-10 68.6 95 48.4
Lj5g0015647 Lotus japonicus HOM05D001127 ORTHO05D002230 5.4e-10 68.2 93 45.2
Nitab4.5_0002127g0020 Nicotiana tabacum HOM05D001127 ORTHO05D002230 5.4e-10 68.2 86 47.7
Os05g0465100 Oryza sativa ssp. japonica HOM05D001127 ORTHO05D002230 5.4e-10 68.2 97 47.4
Prupe.2G221500 Prunus persica HOM05D001127 ORTHO05D002230 5.4e-10 68.2 97 44.3
Sed0016528 Sechium edule HOM05D001127 ORTHO05D002230 5.4e-10 68.2 91 48.4
Zm00001eb351610 Zea mays HOM05D001127 ORTHO05D002230 5.4e-10 68.2 96 47.9
Actinidia29193 Actinidia chinensis HOM05D001127 ORTHO05D002230 7.1e-10 67.8 97 45.4
Nitab4.5_0000575g0050 Nicotiana tabacum HOM05D001127 ORTHO05D002230 7.1e-10 67.8 86 47.7
TPR.G10432 Trifolium pratense HOM05D001127 ORTHO05D002230 7.1e-10 67.8 95 47.4
Ca_11386_v3 Cicer arietinum L. HOM05D001127 ORTHO05D002230 9.3e-10 67.4 95 46.3
Duzib114G0575 Durio zibethinus HOM05D001127 ORTHO05D002230 9.3e-10 67.4 89 46.1
Manes.07G105500 Manihot esculenta HOM05D001127 ORTHO05D002230 9.3e-10 67.4 101 47.5
COL.COLO4_10298 Corchorus olitorius HOM05D001127 ORTHO05D002230 1.2e-09 67.0 95 46.3
Glyma.10G047800 Glycine max HOM05D001127 ORTHO05D002230 1.2e-09 67.0 93 44.1
Actinidia38233 Actinidia chinensis HOM05D001127 ORTHO05D002230 1.6e-09 66.6 87 50.6
Lj1A927T61 Lonicera japonica HOM05D001127 ORTHO05D002230 1.6e-09 66.6 87 50.6
Os01g0835000 Oryza sativa ssp. japonica HOM05D001127 ORTHO05D002230 1.6e-09 66.6 99 47.5
PGR004G2892 Punica granatum HOM05D001127 ORTHO05D002230 1.6e-09 66.6 86 48.8
QL08p057343 Quercus lobata HOM05D001127 ORTHO05D002230 1.6e-09 66.6 97 45.4
TWI53G1923 Tripterygium wilfordii HOM05D001127 ORTHO05D002230 1.6e-09 66.6 96 46.9
Aqoxy4G03138 Aquilegia oxysepala HOM05D001127 ORTHO05D002230 2.1e-09 66.2 95 47.4
Eucgr.J01140 Eucalyptus grandis HOM05D001127 ORTHO05D002230 2.1e-09 66.2 100 49.0
HanXRQChr11g0349571 Helianthus annuus HOM05D001127 ORTHO05D002230 2.1e-09 66.2 91 46.2
Medtr1g116310 Medicago truncatula HOM05D001127 ORTHO05D002230 2.1e-09 66.2 92 47.8
Sabra10G0166100 Salix brachista HOM05D001127 ORTHO05D002230 2.1e-09 66.2 97 45.4
Atru.chr8.2523 Acer truncatum HOM05D001127 ORTHO05D012710 2.7e-09 65.9 95 49.5
Actinidia03011 Actinidia chinensis HOM05D001127 ORTHO05D002230 2.7e-09 65.9 93 48.4
Haze_16959 Corylus avellana HOM05D001127 ORTHO05D002230 2.7e-09 65.9 91 42.9
HanXRQChr14g0460831 Helianthus annuus HOM05D001127 ORTHO05D002230 2.7e-09 65.9 97 48.5
Ciclev10030687m.g Citrus clementina HOM05D001127 ORTHO05D002230 3.5e-09 65.5 92 45.7
Duzib106G1380 Durio zibethinus HOM05D001127 ORTHO05D002230 3.5e-09 65.5 96 47.9
Duzib128G1061 Durio zibethinus HOM05D001127 ORTHO05D002230 3.5e-09 65.5 86 48.8
Hma1.2p1_0111F.1_g053610 Hydrangea macrophylla HOM05D001127 ORTHO05D002230 3.5e-09 65.5 96 49.0
Sed0022503 Sechium edule HOM05D001127 ORTHO05D002230 3.5e-09 65.5 98 43.9
Cfa001570 Carpinus fangiana HOM05D001127 ORTHO05D002230 4.6e-09 65.1 91 42.9
Ciclev10011283m.g Citrus clementina HOM05D001127 ORTHO05D002230 4.6e-09 65.1 97 46.4
Gohir.A05G299100 Gossypium hirsutum HOM05D001127 ORTHO05D002230 4.6e-09 65.1 97 42.3
MD01G1114800 Malus domestica HOM05D001127 ORTHO05D002230 4.6e-09 65.1 96 44.8
MD07G1182800 Malus domestica HOM05D001127 ORTHO05D002230 4.6e-09 65.1 96 44.8
COL.COLO4_06786 Corchorus olitorius HOM05D001127 ORTHO05D002230 6.0e-09 64.7 92 46.7
Thecc.10G064300 Theobroma cacao HOM05D001127 ORTHO05D002230 6.0e-09 64.7 89 46.1
Zm00001eb013000 Zea mays HOM05D001127 ORTHO05D002230 6.0e-09 64.7 97 46.4
EL10Ac2g03527 Beta vulgaris HOM05D001127 ORTHO05D002230 7.8e-09 64.3 97 42.3
Peaxi162Scf00195g00836 Petunia axillaris HOM05D001127 ORTHO05D002230 7.8e-09 64.3 86 45.3
A09p48040 Brassica napus HOM05D001127 ORTHO05D002230 1.0e-08 63.9 89 46.1
BraA09t40257Z Brassica rapa HOM05D001127 ORTHO05D002230 1.0e-08 63.9 89 46.1
CARHR165040 Cardamine hirsuta HOM05D001127 ORTHO05D002230 1.0e-08 63.9 105 44.8
Gohir.A10G208300 Gossypium hirsutum HOM05D001127 ORTHO05D002230 1.0e-08 63.9 87 46.0
Gohir.D10G216600 Gossypium hirsutum HOM05D001127 ORTHO05D002230 1.0e-08 63.9 87 46.0
Gorai.011G242200 Gossypium raimondii HOM05D001127 ORTHO05D002230 1.0e-08 63.9 87 46.0
HanXRQChr07g0200951 Helianthus annuus HOM05D001127 ORTHO05D002230 1.0e-08 63.9 96 46.9
Lalb_Chr21g0307551 Lupinus albus HOM05D001127 ORTHO05D002230 1.0e-08 63.9 95 44.2
Hund22440 Selenicereus undatus HOM05D001127 ORTHO05D002230 1.0e-08 63.9 84 47.6
Aqoxy2G01897 Aquilegia oxysepala HOM05D001127 ORTHO05D002230 1.3e-08 63.5 100 46.0
BcaNung04654 Brassica carinata HOM05D001127 ORTHO05D002230 1.3e-08 63.5 89 46.1
C08p30260 Brassica napus HOM05D001127 ORTHO05D002230 1.3e-08 63.5 89 46.1
BolC8t50633H Brassica oleracea HOM05D001127 ORTHO05D002230 1.3e-08 63.5 104 42.3
Migut.F02011 Erythranthe guttata HOM05D001127 ORTHO05D002230 1.3e-08 63.5 87 49.4
Gohir.D05G298800 Gossypium hirsutum HOM05D001127 ORTHO05D002230 1.3e-08 63.5 97 41.2
THA.LOC104824244 Tarenaya hassleriana HOM05D001127 ORTHO05D002230 1.3e-08 63.5 98 43.9
CiPaw.01G278600 Carya illinoinensis HOM05D001127 ORTHO05D002230 1.7e-08 63.2 92 43.5
Nitab4.5_0004104g0040 Nicotiana tabacum HOM05D001127 ORTHO05D002230 1.7e-08 63.2 96 42.7
ECA232G1988 Erigeron canadensis HOM05D001127 ORTHO05D002230 2.3e-08 62.8 87 50.6
Migut.L01649 Erythranthe guttata HOM05D001127 ORTHO05D002230 2.3e-08 62.8 86 50.0
Oeu029109.1 Olea europaea HOM05D001127 ORTHO05D002230 2.3e-08 62.8 103 44.7
CANSAT80G0329 Cannabis sativa HOM05D001127 ORTHO05D002230 3.0e-08 62.4 96 43.8
Cpa.g.sc114.59 Carica papaya HOM05D001127 ORTHO05D002230 3.0e-08 62.4 86 51.2
ECA238G3032 Erigeron canadensis HOM05D001127 ORTHO05D002230 3.0e-08 62.4 97 46.4
Eucgr.A01196 Eucalyptus grandis HOM05D001127 ORTHO05D002230 3.0e-08 62.4 97 45.4
Psat6g240280 Pisum sativum HOM05D001127 ORTHO05D002230 3.0e-08 62.4 92 46.7
Atru.chr12.606 Acer truncatum HOM05D001127 ORTHO05D002230 3.9e-08 62.0 86 45.3
Aa31sc33G90 Aethionema arabicum HOM05D001127 ORTHO05D002230 3.9e-08 62.0 84 46.4
Gorai.009G316000 Gossypium raimondii HOM05D001127 ORTHO05D002230 3.9e-08 62.0 97 41.2
MBI14_g14542_MAGBIO Magnolia biondii HOM05D001127 ORTHO05D002230 3.9e-08 62.0 91 48.4
Rhsim03G0121200 Rhododendron simsii HOM05D001127 ORTHO05D002230 3.9e-08 62.0 94 42.6
Sp5g07400 Schrenkiella parvula HOM05D001127 ORTHO05D002230 3.9e-08 62.0 104 41.3
SEGI_41029 Sequoiadendron giganteum HOM05D001127 ORTHO05D002230 3.9e-08 62.0 112 39.3
Sc09g0007120 Simmondsia chinensis HOM05D001127 ORTHO05D002230 3.9e-08 62.0 92 43.5
Actinidia19725 Actinidia chinensis HOM05D001127 ORTHO05D002230 5.1e-08 61.6 92 51.1
CsaV3_3G035400 Cucumis sativus L. HOM05D001127 ORTHO05D002230 5.1e-08 61.6 93 43.0
HanXRQChr01g0027011 Helianthus annuus HOM05D001127 ORTHO05D002230 5.1e-08 61.6 94 42.6
Nitab4.5_0000848g0020 Nicotiana tabacum HOM05D001127 ORTHO05D002230 5.1e-08 61.6 95 47.4
DCAR_006486 Daucus carota HOM05D001127 ORTHO05D002230 6.6e-08 61.2 98 43.9
Duzib106G1592 Durio zibethinus HOM05D001127 ORTHO05D002230 6.6e-08 61.2 92 43.5
RcHm_v2.0_Chr1g0364631 Rosa chinensis HOM05D001127 ORTHO05D002230 6.6e-08 61.2 90 46.7
AL5G36140 Arabidopsis lyrata HOM05D001127 ORTHO05D002230 8.7e-08 60.8 103 41.7
Carub.0005s2165 Capsella rubella HOM05D001127 ORTHO05D002230 8.7e-08 60.8 90 45.6
Cfa017482 Carpinus fangiana HOM05D001127 ORTHO05D002230 8.7e-08 60.8 96 45.8
Thhalv10010127m.g Eutrema salsugineum HOM05D001127 ORTHO05D002230 8.7e-08 60.8 89 44.9
Nitab4.5_0000691g0200 Nicotiana tabacum HOM05D001127 ORTHO05D002230 8.7e-08 60.8 86 43.0
PSO384G1853 Papaver somniferum HOM05D001127 ORTHO05D002230 8.7e-08 60.8 86 48.8
PSO713G0001 Papaver somniferum HOM05D001127 ORTHO05D002230 8.7e-08 60.8 86 48.8
Zm00001eb397250 Zea mays HOM05D001127 ORTHO05D002230 8.7e-08 60.8 96 43.8
CANSAT56G3216 Cannabis sativa HOM05D001127 ORTHO05D002230 1.1e-07 60.5 96 41.7
Oeu017249.1 Olea europaea HOM05D001127 ORTHO05D002230 1.1e-07 60.5 84 45.2
Solyc09g007160.4 Solanum lycopersicum HOM05D001127 ORTHO05D002230 1.5e-07 60.1 98 43.9
Sopen09g002030 Solanum pennellii HOM05D001127 ORTHO05D002230 1.5e-07 60.1 98 43.9
Duzib093G0050 Durio zibethinus HOM05D001127 ORTHO05D002230 1.9e-07 59.7 84 47.6
vmacro07100 Vaccinium macrocarpon HOM05D001127 ORTHO05D002230 1.9e-07 59.7 107 40.2
CDE04G1624 Ceratophyllum demersum HOM05D001127 ORTHO05D002230 2.5e-07 59.3 86 45.3
HanXRQChr15g0496851 Helianthus annuus HOM05D001127 ORTHO05D002230 2.5e-07 59.3 94 44.7
Lsat_1_v5_gn_2_115380 Lactuca sativa HOM05D001127 ORTHO05D002230 2.5e-07 59.3 87 47.1
Manes.08G001400 Manihot esculenta HOM05D001127 ORTHO05D002230 2.5e-07 59.3 91 42.9
Peaxi162Scf00543g00420 Petunia axillaris HOM05D001127 ORTHO05D002230 2.5e-07 59.3 95 43.2
TWI15G1084 Tripterygium wilfordii HOM05D001127 ORTHO05D002230 3.3e-07 58.9 85 44.7
Zm00001eb148790 Zea mays HOM05D001127 ORTHO05D002230 3.3e-07 58.9 99 44.4
Phvul.007G162150 Phaseolus vulgaris HOM05D001127 ORTHO05D002230 4.3e-07 58.5 95 43.2
unitig_62.g23951 Utricularia gibba HOM05D001127 ORTHO05D002230 4.3e-07 58.5 86 45.3
ECA248G3496 Erigeron canadensis HOM05D001127 ORTHO05D002230 5.6e-07 58.2 99 42.4
CiPaw.09G184300 Carya illinoinensis HOM05D001127 ORTHO05D002230 7.3e-07 57.8 94 45.7
DCAR_015257 Daucus carota HOM05D001127 ORTHO05D002230 7.3e-07 57.8 102 43.1
FvH4_7g20590 Fragaria vesca HOM05D001127 ORTHO05D002230 7.3e-07 57.8 91 40.7
FAN03G3433 Fragaria x ananassa HOM05D001127 ORTHO05D002230 7.3e-07 57.8 91 40.7
FAN06G4441 Fragaria x ananassa HOM05D001127 ORTHO05D002230 7.3e-07 57.8 91 40.7
Sed0026750 Sechium edule HOM05D001127 ORTHO05D002230 9.6e-07 57.4 94 42.6
FAN10G1953 Fragaria x ananassa HOM05D001127 ORTHO05D002230 1.3e-06 57.0 86 41.9
Potri.006G133400 Populus trichocarpa HOM05D001127 ORTHO05D002230 1.3e-06 57.0 85 48.2
PGR044G2328 Punica granatum HOM05D001127 ORTHO05D002230 1.3e-06 57.0 100 46.0
SGA_v2.0_scaffold62G21440 Striga asiatica HOM05D001127 ORTHO05D002230 1.3e-06 57.0 94 41.5
MD12G1129300 Malus domestica HOM05D001127 ORTHO05D002230 2.1e-06 56.2 95 37.9
QL07p045698 Quercus lobata HOM05D001127 ORTHO05D002230 2.1e-06 56.2 88 43.2
Sabra06G0104900 Salix brachista HOM05D001127 ORTHO05D002230 2.1e-06 56.2 84 46.4
THA.LOC104809989 Tarenaya hassleriana HOM05D001127 ORTHO05D002230 2.8e-06 55.8 99 40.4
Ah.15g092000 Amaranthus hybridus HOM05D001127 ORTHO05D002230 4.8e-06 55.1 96 45.8
AT2G37290 Arabidopsis thaliana HOM05D001127 ORTHO05D002230 4.8e-06 55.1 93 43.0
Lsat_1_v5_gn_1_53421 Lactuca sativa HOM05D001127 ORTHO05D002230 4.8e-06 55.1 96 43.8
FAN06G2619 Fragaria x ananassa HOM05D001127 ORTHO05D002230 6.2e-06 54.7 91 39.6
Gorai.013G024400 Gossypium raimondii HOM05D001127 ORTHO05D002230 6.2e-06 54.7 89 40.4
CAN.G350.54 Capsicum annuum HOM05D001127 ORTHO05D002230 8.1e-06 54.3 86 47.7
ClCG10G020690 Citrullus lanatus HOM05D001127 ORTHO05D002230 8.1e-06 54.3 83 45.8
Gohir.D04G116500 Gossypium hirsutum HOM05D001127 ORTHO05D002230 8.1e-06 54.3 97 42.3
RcHm_v2.0_Chr3g0468201 Rosa chinensis HOM05D001127 ORTHO05D002230 8.1e-06 54.3 94 39.4


User provided reference genes

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