Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 0.0e+00 2166.0 1153 100.0
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 0.0e+00 1088.9 647 92.7
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 3.6e-198 696.4 583 69.8
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 6.5e-139 499.6 1305 35.2
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 7.9e-137 492.7 1274 35.8
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 7.9e-137 492.7 1270 35.6
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.3e-134 485.3 1270 35.6
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 8.8e-128 462.6 1313 35.3
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 5.7e-127 459.9 1271 34.2
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 1.7e-126 458.4 1235 34.6
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 3.7e-126 457.2 1276 34.8
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 4.1e-125 453.8 1324 35.2
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.0e-123 449.1 1314 33.3
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 1.9e-122 444.9 1190 35.7
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 4.4e-119 433.7 1269 33.7
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 1.3e-118 432.2 1298 34.5
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 1.8e-117 428.3 1242 33.6
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 3.1e-117 427.6 1282 33.0
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 4.1e-117 427.2 1300 33.4
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 1.0e-115 422.5 1217 35.0
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 2.2e-115 421.4 1275 33.6
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 5.0e-115 420.2 1195 34.1
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 1.5e-114 418.7 1259 32.2
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 1.9e-114 418.3 1254 31.9
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 5.5e-114 416.8 1397 32.4
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 1.2e-113 415.6 1218 34.1
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 1.2e-113 415.6 1272 33.7
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 1.2e-113 415.6 1264 33.6
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 4.7e-113 413.7 1252 32.5
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 1.0e-112 412.5 1229 33.7
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 1.4e-112 412.1 1259 32.0
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 1.8e-112 411.8 1257 32.9
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 2.3e-112 411.4 1220 33.9
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 4.0e-112 410.6 1250 32.6
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 5.2e-112 410.2 1239 32.3
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 1.2e-111 409.1 1253 32.4
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 2.0e-111 408.3 1302 32.4
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 3.4e-111 407.5 1248 32.7
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 9.8e-111 406.0 1302 32.3
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 8.3e-110 402.9 1166 34.4
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 3.1e-109 401.0 1274 32.4
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 1.2e-108 399.1 1221 33.7
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 4.5e-108 397.1 1307 31.9
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 1.7e-107 395.2 1242 33.2
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 3.8e-107 394.0 1208 32.8
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 8.5e-107 392.9 1240 33.3
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 1.1e-106 392.5 1254 33.4
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 3.2e-106 391.0 1213 32.7
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 7.2e-106 389.8 1240 33.0
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.7e-105 387.9 1266 33.0
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.6e-105 387.5 1200 34.0
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 8.0e-105 386.3 1236 32.5
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 1.4e-104 385.6 1155 34.9
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 4.0e-104 384.0 1211 32.2
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 1.5e-103 382.1 1170 32.1
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 2.0e-103 381.7 1250 32.2
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 5.7e-103 380.2 1271 32.7
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 9.8e-103 379.4 1313 31.4
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 1.7e-102 378.6 1262 32.3
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 1.7e-102 378.6 1241 32.2
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 2.8e-102 377.9 1145 32.9
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 6.3e-102 376.7 1267 32.1
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 4.1e-101 374.0 1231 31.9
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 7.0e-101 373.2 1198 32.4
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 1.6e-100 372.1 1292 31.0
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 3.5e-100 370.9 1180 32.1
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 5.9e-100 370.2 1258 31.9
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 7.7e-100 369.8 1178 33.2
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 1.3e-99 369.0 925 35.8
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 6.6e-99 366.7 1264 31.7
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 7.2e-98 363.2 819 35.5
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 9.5e-98 362.8 979 35.2
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 1.6e-97 362.1 1308 31.0
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 2.8e-97 361.3 1190 32.9
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 6.1e-97 360.1 1257 31.5
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 5.2e-96 357.1 1260 31.7
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 6.8e-96 356.7 1157 32.4
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 8.9e-96 356.3 1245 32.0
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 1.5e-95 355.5 1138 34.1
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 4.4e-95 354.0 1267 32.5
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 7.5e-95 353.2 1163 32.5
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 9.8e-95 352.8 1244 30.9
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 1.3e-94 352.4 1143 34.0
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 1.3e-94 352.4 1194 30.7
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 3.7e-94 350.9 1143 33.1
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 4.9e-94 350.5 1143 33.9
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 1.1e-93 349.4 1217 31.5
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 1.8e-93 348.6 1207 33.3
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 4.1e-93 347.4 708 38.7
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 9.2e-93 346.3 1142 32.2
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 9.2e-93 346.3 1142 32.2
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 7.8e-92 343.2 1236 30.6
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 3.9e-91 340.9 1188 31.6
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 2.5e-90 338.2 1114 32.0
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 5.6e-90 337.0 1350 29.6
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 2.3e-88 331.6 1230 31.1
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 1.7e-86 325.5 1382 30.5
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.7e-84 318.2 529 43.5
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.1e-80 306.2 878 33.4
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 2.7e-76 291.6 1086 30.2
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.7e-76 291.6 1076 30.3
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 5.2e-72 277.3 658 37.2
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 5.2e-72 277.3 1465 27.4
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 8.9e-72 276.6 503 39.8
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.9e-69 268.9 871 31.2
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 3.6e-65 254.6 321 47.4
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 1.9e-58 232.3 235 54.5
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 1.4e-53 216.1 471 39.3
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 2.6e-47 195.3 503 35.4
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 6.0e-44 184.1 603 33.5
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 2.4e-40 172.2 586 30.9
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 3.1e-40 171.8 152 55.9
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 2.9e-38 165.2 681 27.5
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 2.1e-36 159.1 180 44.4
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 1.8e-35 156.0 628 32.0
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 1.8e-35 156.0 180 50.0
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 8.7e-35 153.7 180 49.4
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 3.1e-32 145.2 168 50.0
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.2e-30 139.0 384 32.3
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 5.0e-30 137.9 348 33.9
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 1.2e-28 133.3 405 30.9
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 1.6e-28 132.9 348 34.2
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.1e-28 132.5 255 41.2
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 2.6e-23 115.5 347 32.3
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 2.1e-20 105.9 141 45.4
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 1.0e-19 103.6 493 27.0
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 3.3e-18 98.6 259 42.9
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 4.3e-18 98.2 179 48.6
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 5.7e-18 97.8 261 42.5
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 1.4e-16 93.2 405 27.9
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 1.5e-15 89.7 432 28.5
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 1.0e-14 87.0 313 30.4
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 1.0e-14 87.0 513 26.5
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.3e-11 75.9 67 56.7
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 3.9e-11 75.1 602 23.6
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.7e-09 69.7 118 51.7
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 2.2e-09 69.3 62 58.1
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.5e-07 62.0 185 35.1


User provided reference genes

Program Settings