Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025063 Vanilla planifolia HOM05D002956 ORTHO05D009000 1.4e-156 556.2 273 100.0
TAR633G2508 Trochodendron aralioides HOM05D002956 ORTHO05D009000 2.3e-82 309.7 268 59.7
Dinv04582 Davidia involucrata HOM05D000102 ORTHO05D000138 4.0e-79 298.9 264 60.6
MBI19_g19212_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D009000 1.3e-77 293.9 216 68.1
Manes.02G137000 Manihot esculenta HOM05D002956 ORTHO05D009000 1.4e-76 290.4 264 57.6
CSS0047298 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D009000 3.2e-76 289.3 264 59.5
Duzib150G0064 Durio zibethinus HOM05D002956 ORTHO05D009000 3.2e-76 289.3 267 58.1
Thecc.09G246200 Theobroma cacao HOM05D002956 ORTHO05D009000 1.6e-75 287.0 261 57.5
Actinidia06979 Actinidia chinensis HOM05D002956 ORTHO05D009000 1.3e-74 283.9 281 53.0
Aqoxy2G00440 Aquilegia oxysepala HOM05D002956 ORTHO05D009000 7.3e-73 278.1 269 55.8
PGR102G2739 Punica granatum HOM05D002956 ORTHO05D009000 2.1e-72 276.6 278 55.0
CANSAT54G2237 Cannabis sativa HOM05D002956 ORTHO05D009000 4.7e-72 275.4 227 59.9
Gohir.A05G073600 Gossypium hirsutum HOM05D002956 ORTHO05D009000 1.4e-71 273.9 266 55.3
Hma1.2p1_0460F.1_g157580 Hydrangea macrophylla HOM05D002956 ORTHO05D009000 1.8e-71 273.5 267 53.9
Cpa.g.sc34.182 Carica papaya HOM05D002956 ORTHO05D009000 3.1e-71 272.7 264 57.2
PSO384G3893 Papaver somniferum HOM05D002956 ORTHO05D009000 5.2e-71 271.9 264 53.8
Potri.009G068300 Populus trichocarpa HOM05D002956 ORTHO05D009000 6.8e-71 271.6 212 63.2
ATR0307G004 Amborella trichopoda HOM05D002956 ORTHO05D009000 8.9e-71 271.2 209 62.7
Gohir.D05G076500 Gossypium hirsutum HOM05D002956 ORTHO05D009000 8.9e-71 271.2 266 55.3
Gorai.009G077800 Gossypium raimondii HOM05D002956 ORTHO05D009000 8.9e-71 271.2 266 55.3
PSO339G4249 Papaver somniferum HOM05D002956 ORTHO05D009000 1.5e-70 270.4 270 52.2
CDE08G0764 Ceratophyllum demersum HOM05D002956 ORTHO05D009000 2.0e-70 270.0 263 52.9
RcHm_v2.0_Chr5g0050271 Rosa chinensis HOM05D002956 ORTHO05D009000 4.4e-70 268.9 227 59.0
Cfa009899 Carpinus fangiana HOM05D002956 ORTHO05D009000 5.8e-70 268.5 269 54.6
Lj6g0021242 Lotus japonicus HOM05D002956 ORTHO05D009000 5.8e-70 268.5 216 60.6
Eucgr.B03751 Eucalyptus grandis HOM05D002956 ORTHO05D009000 7.5e-70 268.1 204 65.2
Atru.chr3.2859 Acer truncatum HOM05D002956 ORTHO05D009000 1.7e-69 266.9 212 62.3
Lalb_Chr15g0078501 Lupinus albus HOM05D002956 ORTHO05D009000 2.9e-69 266.2 271 53.5
QL01p016676 Quercus lobata HOM05D002956 ORTHO05D009000 8.3e-69 264.6 270 55.9
Cc01_g06260 Coffea canephora HOM05D002956 ORTHO05D009000 1.1e-68 264.2 213 62.0
MD00G1148000 Malus domestica HOM05D002956 ORTHO05D009000 1.4e-68 263.8 227 57.7
FAN20G2737 Fragaria x ananassa HOM05D002956 ORTHO05D009000 1.9e-68 263.5 209 63.2
Ciclev10016188m.g Citrus clementina HOM05D002956 ORTHO05D009000 3.2e-68 262.7 246 54.9
FvH4_2g35650 Fragaria vesca HOM05D002956 ORTHO05D009000 4.1e-68 262.3 209 63.2
Glyma.15G273500 Glycine max HOM05D002956 ORTHO05D009000 4.1e-68 262.3 204 61.8
MD00G1134800 Malus domestica HOM05D002956 ORTHO05D009000 7.0e-68 261.5 246 54.5
GSVIVG01037339001 Vitis vinifera HOM05D002956 ORTHO05D009000 9.2e-68 261.2 178 68.0
FAN27G0310 Fragaria x ananassa HOM05D002956 ORTHO05D009000 1.2e-67 260.8 211 62.1
Medtr3g437110 Medicago truncatula HOM05D002956 ORTHO05D009000 1.2e-67 260.8 212 60.8
SGA_v2.0_scaffold29G12222 Striga asiatica HOM05D002956 ORTHO05D009000 1.2e-67 260.8 279 50.2
Phvul.005G020500 Phaseolus vulgaris HOM05D002956 ORTHO05D009000 1.6e-67 260.4 259 52.9
Ca_26337_v3 Cicer arietinum L. HOM05D002956 ORTHO05D009000 2.0e-67 260.0 208 63.5
Sc16g0010930 Simmondsia chinensis HOM05D002956 ORTHO05D009000 2.7e-67 259.6 263 52.9
arahy.Tifrunner.gnm1.ann1.NKUQ81 Arachis hypogaea HOM05D002956 ORTHO05D009000 3.5e-67 259.2 209 62.7
FAN22G1360 Fragaria x ananassa HOM05D002956 ORTHO05D009000 3.5e-67 259.2 211 62.1
Solyc01g008700.4 Solanum lycopersicum HOM05D002956 ORTHO05D009000 4.6e-67 258.8 270 53.7
arahy.Tifrunner.gnm1.ann1.UED96S Arachis hypogaea HOM05D002956 ORTHO05D009000 7.8e-67 258.1 209 62.2
Migut.D00676 Erythranthe guttata HOM05D002956 ORTHO05D009000 1.0e-66 257.7 256 54.7
FAN15G3287 Fragaria x ananassa HOM05D002956 ORTHO05D009000 1.0e-66 257.7 223 59.6
THA.LOC104826457 Tarenaya hassleriana HOM05D002956 ORTHO05D009000 1.0e-66 257.7 261 52.5
Aa31LG5G8950 Aethionema arabicum HOM05D002956 ORTHO05D009000 1.3e-66 257.3 207 62.8
TPR.G11887 Trifolium pratense HOM05D002956 ORTHO05D009000 1.3e-66 257.3 201 63.7
VMungo1080G0193 Vigna mungo HOM05D002956 ORTHO05D009000 1.3e-66 257.3 204 61.3
unitig_8.g3652 Utricularia gibba HOM05D002956 ORTHO05D009000 1.7e-66 256.9 225 56.9
Sopen01g004220 Solanum pennellii HOM05D002956 ORTHO05D009000 2.3e-66 256.5 270 53.3
Sabra09G0051400 Salix brachista HOM05D002956 ORTHO05D009000 3.9e-66 255.8 270 53.7
TWI31G1447 Tripterygium wilfordii HOM05D002956 ORTHO05D009000 6.6e-66 255.0 206 62.1
EL10Ac4g10093 Beta vulgaris HOM05D002956 ORTHO05D009000 1.9e-65 253.4 256 54.7
DCAR_006895 Daucus carota HOM05D002956 ORTHO05D009000 3.3e-65 252.7 215 58.1
Thhalv10002070m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 3.3e-65 252.7 208 63.9
AUR62006560 Chenopodium quinoa HOM05D002956 ORTHO05D009000 9.5e-65 251.1 245 53.1
Migut.N02380 Erythranthe guttata HOM05D002956 ORTHO05D009000 9.5e-65 251.1 216 61.6
Glyma.08G154600 Glycine max HOM05D002956 ORTHO05D009000 1.6e-64 250.4 204 60.3
Oeu027216.2 Olea europaea HOM05D002956 ORTHO05D009000 1.6e-64 250.4 257 54.5
CsaV3_6G038840 Cucumis sativus L. HOM05D002956 ORTHO05D009000 2.1e-64 250.0 259 52.1
PGSC0003DMG400004431 Solanum tuberosum HOM05D002956 ORTHO05D009000 2.1e-64 250.0 277 52.0
AUR62000215 Chenopodium quinoa HOM05D002956 ORTHO05D009000 2.8e-64 249.6 215 57.7
Ah.06g194750 Amaranthus hybridus HOM05D002956 ORTHO05D009000 6.2e-64 248.4 261 52.9
MSTRG.17638 Avicennia marina HOM05D002956 ORTHO05D009000 8.0e-64 248.1 204 61.3
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 1.1e-63 247.7 203 62.6
HanXRQChr12g0380431 Helianthus annuus HOM05D002956 ORTHO05D009000 1.1e-63 247.7 242 53.3
Peaxi162Scf00032g02025 Petunia axillaris HOM05D002956 ORTHO05D009000 1.8e-63 246.9 241 55.2
Carub.0004s0731 Capsella rubella HOM05D002956 ORTHO05D009000 5.2e-63 245.4 206 61.7
MELO3C014549.2 Cucumis melo HOM05D002956 ORTHO05D009000 6.8e-63 245.0 271 50.2
Lsat_1_v5_gn_5_63121 Lactuca sativa HOM05D002956 ORTHO05D009000 4.4e-62 242.3 268 51.5
AL4G20050 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 7.5e-62 241.5 199 61.8
SalBow6G2483 Salvia bowleyana HOM05D002956 ORTHO05D009000 6.4e-61 238.4 212 56.6
ECA233G2896 Erigeron canadensis HOM05D000003 ORTHO05D009000 8.3e-61 238.0 173 65.3
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 1.1e-60 237.7 208 59.6
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 1.1e-60 237.7 208 59.6
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 1.1e-60 237.7 208 59.6
Thhalv10002099m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 1.1e-60 237.7 175 68.6
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 1.9e-60 236.9 208 59.6
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 7.1e-60 235.0 208 59.1
Haze_23260 Corylus avellana HOM05D002956 ORTHO05D009000 7.8e-59 231.5 333 44.4
Nitab4.5_0000390g0150 Nicotiana tabacum HOM05D002956 ORTHO05D009000 1.3e-58 230.7 204 58.3
Rhsim13G0206200 Rhododendron simsii HOM05D002956 ORTHO05D009000 1.1e-57 227.6 408 36.8
AT2G26840 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 4.0e-55 219.2 267 46.4
Zm00001eb128680 Zea mays HOM05D002956 ORTHO05D009000 4.4e-54 215.7 172 59.9
Nn7g36832 Nelumbo nucifera HOM05D002956 ORTHO05D009000 9.9e-54 214.5 264 49.2
Os01g0268900 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D009000 3.7e-53 212.6 209 52.6
Mapoly0206s0003 Marchantia polymorpha HOM05D002956 ORTHO05D009000 3.0e-50 203.0 171 53.8
Sp4g08630 Schrenkiella parvula HOM05D002956 ORTHO05D009000 3.3e-49 199.5 171 60.8
SMO367G0391 Selaginella moellendorffii HOM05D002956 ORTHO05D009000 1.4e-47 194.1 195 48.7
ClCG02G022720 Citrullus lanatus HOM05D002956 ORTHO05D009000 2.6e-46 189.9 258 45.7
Pp3c23_20070 Physcomitrium patens HOM05D002956 ORTHO05D009000 2.2e-45 186.8 210 44.8
Duzib168G2273 Durio zibethinus HOM05D002956 ORTHO05D009000 6.4e-45 185.3 164 57.9
CBR_g32285 Chara braunii HOM05D002956 ORTHO05D009000 1.6e-43 180.6 169 48.5
COL.COLO4_07383 Corchorus olitorius HOM05D002956 ORTHO05D009000 1.3e-40 171.0 269 42.4
AL5G21910 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 3.6e-32 142.9 170 43.5
CiPaw.14G111100 Carya illinoinensis HOM05D002956 ORTHO05D009000 5.3e-31 139.0 183 45.9
Nitab4.5_0006687g0020 Nicotiana tabacum HOM05D002956 ORTHO05D009000 9.0e-31 138.3 90 72.2
MCO16G644 Micromonas commoda HOM05D002956 ORTHO05D009000 1.4e-28 131.0 160 43.8
AagrBONN_evm.TU.Sc2ySwM_228.3484 Anthoceros agrestis HOM05D002956 ORTHO05D009000 3.5e-27 126.3 121 53.7
Prupe.4G260500 Prunus persica HOM05D002956 ORTHO05D009000 3.0e-26 123.2 109 53.2
Nitab4.5_0006687g0010 Nicotiana tabacum HOM05D002956 ORTHO05D000001 7.4e-25 118.6 114 54.4
CiPaw.13G148600 Carya illinoinensis HOM05D002956 ORTHO05D009000 2.1e-24 117.1 171 44.4
AT3G43910 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 1.5e-22 110.9 188 37.8
Psat5g240480 Pisum sativum HOM05D002956 ORTHO05D009000 1.9e-20 104.0 118 46.6
Sed0027603 Sechium edule HOM05D002956 ORTHO05D009000 2.5e-17 93.6 141 41.8
CARHR119020 Cardamine hirsuta HOM05D002956 ORTHO05D009000 7.4e-17 92.0 105 52.4
vmacro04046 Vaccinium macrocarpon HOM05D002956 ORTHO05D009000 5.8e-14 82.4 123 41.5
Cre04.g218000 Chlamydomonas reinhardtii HOM05D002956 ORTHO05D009000 3.5e-11 73.2 102 38.2
PRCOL_00003518 Prasinoderma coloniale HOM05D002956 ORTHO05D009000 7.9e-11 72.0 64 56.2
CARHR035850 Cardamine hirsuta HOM05D002956 ORTHO05D009000 1.8e-10 70.9 83 49.4
CARHR035860 Cardamine hirsuta HOM05D002956 ORTHO05D009000 1.5e-09 67.8 99 39.4
Psat5g184640 Pisum sativum HOM05D002956 ORTHO05D009000 2.6e-06 57.0 74 41.9


User provided reference genes

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