Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 1.1e-256 889.4 437 100.0
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 1.0e-108 397.9 479 45.3
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 1.6e-106 390.6 423 51.5
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 2.3e-105 386.7 438 49.3
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 3.0e-105 386.3 450 47.8
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 3.4e-104 382.9 434 47.2
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 1.7e-103 380.6 438 48.4
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.2e-103 380.2 472 45.8
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 4.8e-103 379.0 473 45.9
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 2.7e-101 373.2 444 46.2
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 5.9e-101 372.1 496 43.8
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 5.9e-101 372.1 434 49.1
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 1.3e-100 370.9 477 44.4
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.7e-100 370.5 444 46.8
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.9e-100 369.8 437 46.5
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 6.5e-100 368.6 460 45.2
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.1e-99 367.9 455 46.6
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 1.1e-99 367.9 460 45.7
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 1.5e-99 367.5 459 44.2
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 3.2e-99 366.3 475 45.1
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 4.2e-99 365.9 470 42.3
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 4.2e-99 365.9 475 45.1
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 9.4e-99 364.8 436 46.1
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 1.6e-98 364.0 421 45.1
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 1.6e-98 364.0 424 46.2
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 8.8e-97 358.2 441 47.2
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 8.8e-97 358.2 459 46.2
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 7.5e-96 355.1 430 46.0
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 9.8e-96 354.8 443 44.5
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 9.8e-96 354.8 443 44.5
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 1.3e-95 354.4 455 44.6
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 2.2e-95 353.6 426 45.1
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 3.7e-95 352.8 477 43.8
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 1.4e-94 350.9 421 47.5
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 1.8e-94 350.5 423 44.7
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 2.4e-94 350.1 435 42.5
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 5.4e-94 349.0 465 43.0
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 5.9e-93 345.5 440 45.0
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 1.7e-92 344.0 413 45.8
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 5.0e-92 342.4 456 42.3
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 5.0e-92 342.4 463 43.8
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 6.1e-90 335.5 435 42.1
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 4.0e-89 332.8 469 43.1
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 9.8e-88 328.2 483 41.8
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 1.3e-87 327.8 401 47.4
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 1.7e-87 327.4 460 43.3
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 2.8e-87 326.6 447 43.8
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 1.1e-86 324.7 428 45.3
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.8e-86 323.9 392 47.2
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 7.0e-86 322.0 441 44.2
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 3.5e-85 319.7 436 45.6
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 1.3e-84 317.8 396 44.4
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 1.7e-79 300.8 470 41.5
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 4.1e-78 296.2 401 41.4
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.3e-76 291.2 433 40.0
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 6.6e-76 288.9 406 42.6
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 2.5e-75 287.0 497 36.6
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.6e-74 284.3 435 39.3
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 1.4e-73 281.2 410 40.5
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 2.3e-73 280.4 383 42.3
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.3e-73 280.4 394 40.1
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 5.2e-73 279.3 408 41.7
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.3e-71 274.6 405 40.0
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 1.9e-70 270.8 400 39.8
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.9e-70 270.8 413 40.0
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 4.6e-69 266.2 375 41.3
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 1.7e-68 264.2 405 39.0
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 1.7e-68 264.2 405 39.0
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 2.3e-68 263.8 401 37.4
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 3.0e-68 263.5 405 39.0
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 5.1e-68 262.7 425 40.2
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 5.1e-68 262.7 405 39.0
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.5e-67 261.2 398 38.9
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 1.6e-66 257.7 394 38.6
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 3.6e-66 256.5 400 38.8
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 7.6e-64 248.8 408 38.7
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 7.6e-64 248.8 405 41.5
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.7e-63 247.7 408 38.7
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 1.6e-61 241.1 395 37.7
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 2.1e-61 240.7 397 36.0
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 2.7e-61 240.4 394 36.0
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 1.7e-60 237.7 391 36.8
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 1.7e-60 237.7 454 35.0
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 6.6e-60 235.7 345 40.3
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 2.8e-58 230.3 399 33.8
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 2.8e-58 230.3 424 34.4
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 5.2e-57 226.1 393 36.6
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 8.9e-57 225.3 388 36.6
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 4.4e-56 223.0 332 40.7
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 1.9e-54 217.6 359 37.3
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.2e-53 214.9 315 38.1
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 7.8e-53 212.2 420 33.1
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 8.7e-52 208.8 387 35.4
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 7.3e-51 205.7 342 36.3
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 8.1e-50 202.2 320 38.4
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 8.1e-50 202.2 318 37.4
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 3.1e-49 200.3 319 36.7
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.5e-48 198.0 191 52.4
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 2.2e-47 194.1 332 35.5
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.8e-47 193.4 288 37.5
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 4.9e-47 193.0 357 33.1
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 6.4e-47 192.6 299 41.1
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 8.4e-47 192.2 386 33.2
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 1.1e-46 191.8 333 35.4
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.9e-46 191.0 311 35.4
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 2.4e-46 190.7 335 34.6
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 6.0e-45 186.0 397 31.7
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 1.1e-43 181.8 310 37.1
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.8e-42 176.4 340 33.2
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 8.1e-42 175.6 341 32.8
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.4e-41 174.1 135 62.2
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 4.0e-41 173.3 394 33.0
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 2.7e-37 160.6 266 37.2
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 2.7e-37 160.6 266 37.2
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.3e-36 158.3 374 31.6
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.3e-36 157.5 319 32.3
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 5.1e-36 156.4 207 45.9
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 6.7e-36 156.0 346 33.5
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 8.7e-36 155.6 141 57.4
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.1e-35 155.2 319 32.0
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 7.4e-35 152.5 359 31.5
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 3.7e-34 150.2 145 51.0
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 6.2e-34 149.4 253 36.4
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 6.2e-34 149.4 150 50.0
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 6.2e-34 149.4 141 51.1
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 1.8e-33 147.9 141 50.4
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 2.4e-33 147.5 258 39.1
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 3.1e-33 147.1 132 48.5
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 3.1e-33 147.1 347 33.1
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 2.0e-32 144.4 163 44.8
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.3e-31 141.7 109 56.9
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 1.5e-27 128.3 255 31.0
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 1.6e-26 124.8 243 36.6
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 5.3e-25 119.8 256 35.2
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 2.9e-23 114.0 339 30.7
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 3.2e-22 110.5 124 46.0
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 3.9e-20 103.6 145 38.6
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.5e-19 101.7 161 38.5
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 7.4e-19 99.4 115 44.3
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.0e-15 89.0 115 42.6
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 5.0e-15 86.7 66 57.6
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.1e-14 85.5 102 44.1
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 5.1e-12 76.6 283 21.9
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 6.7e-12 76.3 102 40.2
Nn2g11162 Nelumbo nucifera HOM05D000080 ORTHO05D000053 1.4e-06 58.5 39 61.5
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 4.2e-06 57.0 63 39.7


User provided reference genes

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