Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025031 Vanilla planifolia HOM05D003103 ORTHO05D003999 9.5e-95 350.1 173 100.0
Zm00001eb063870 Zea mays HOM05D003103 ORTHO05D003999 3.4e-44 182.2 275 41.5
Thecc.01G058700 Theobroma cacao HOM05D003103 ORTHO05D003999 1.3e-43 180.3 291 40.9
Nitab4.5_0003519g0020 Nicotiana tabacum HOM05D003103 ORTHO05D003999 1.7e-43 179.9 242 43.4
arahy.Tifrunner.gnm1.ann1.TC99UD Arachis hypogaea HOM05D003103 ORTHO05D003999 5.0e-43 178.3 217 48.8
Os03g0837300 Oryza sativa ssp. japonica HOM05D003103 ORTHO05D003999 6.5e-43 177.9 275 40.4
COL.COLO4_11442 Corchorus olitorius HOM05D003103 ORTHO05D003999 1.4e-42 176.8 296 39.9
TAR381G0597 Trochodendron aralioides HOM05D003103 ORTHO05D003999 1.4e-42 176.8 274 40.9
CiPaw.01G016600 Carya illinoinensis HOM05D003103 ORTHO05D003999 7.2e-42 174.5 291 40.2
Eucgr.I00907 Eucalyptus grandis HOM05D003103 ORTHO05D003999 7.2e-42 174.5 274 39.8
Cfa004034 Carpinus fangiana HOM05D003103 ORTHO05D003999 9.4e-42 174.1 298 39.3
Lalb_Chr05g0226491 Lupinus albus HOM05D003103 ORTHO05D003999 3.6e-41 172.2 274 39.8
EL10Ac6g15729 Beta vulgaris HOM05D003103 ORTHO05D003999 4.6e-41 171.8 251 41.4
MD02G1174500 Malus domestica HOM05D003103 ORTHO05D003999 4.6e-41 171.8 278 39.9
TWI73G1128 Tripterygium wilfordii HOM05D003103 ORTHO05D003999 4.6e-41 171.8 274 40.1
MSTRG.15382 Avicennia marina HOM05D003103 ORTHO05D003999 6.1e-41 171.4 274 39.8
Lalb_Chr16g0388671 Lupinus albus HOM05D003103 ORTHO05D003999 6.1e-41 171.4 276 39.5
TWI09G1566 Tripterygium wilfordii HOM05D003103 ORTHO05D003999 6.1e-41 171.4 274 40.5
Potri.005G139800 Populus trichocarpa HOM05D003103 ORTHO05D003999 7.9e-41 171.0 274 40.1
CAN.G370.47 Capsicum annuum HOM05D003103 ORTHO05D003999 1.0e-40 170.6 274 39.1
Cc07_g06120 Coffea canephora HOM05D003103 ORTHO05D003999 1.4e-40 170.2 270 39.6
Lj4g0002336 Lotus japonicus HOM05D003103 ORTHO05D003999 1.4e-40 170.2 271 39.1
Duzib147G0775 Durio zibethinus HOM05D003103 ORTHO05D003999 1.8e-40 169.9 296 38.9
Ah.03g145520 Amaranthus hybridus HOM05D003103 ORTHO05D003999 2.3e-40 169.5 251 40.2
Cpa.g.sc55.133 Carica papaya HOM05D003103 ORTHO05D003999 2.3e-40 169.5 273 39.9
Lalb_Chr09g0323251 Lupinus albus HOM05D003103 ORTHO05D003999 2.3e-40 169.5 280 40.0
QL06p040980 Quercus lobata HOM05D003103 ORTHO05D003999 2.3e-40 169.5 274 39.8
Hund13545 Selenicereus undatus HOM05D003103 ORTHO05D003999 2.3e-40 169.5 276 39.1
Sc03g0001680 Simmondsia chinensis HOM05D003103 ORTHO05D003999 2.3e-40 169.5 291 38.5
TPR.G19077 Trifolium pratense HOM05D003103 ORTHO05D003999 2.3e-40 169.5 271 39.5
Ca_22156_v3 Cicer arietinum L. HOM05D003103 ORTHO05D003999 3.0e-40 169.1 271 39.5
Duzib264G0053 Durio zibethinus HOM05D003103 ORTHO05D003999 3.9e-40 168.7 289 39.1
Psat4g086400 Pisum sativum HOM05D003103 ORTHO05D003999 3.9e-40 168.7 271 39.1
ECA246G4532 Erigeron canadensis HOM05D003103 ORTHO05D003999 5.1e-40 168.3 293 37.2
Medtr4g094805 Medicago truncatula HOM05D003103 ORTHO05D003999 5.1e-40 168.3 249 41.0
THA.LOC104819846 Tarenaya hassleriana HOM05D003103 ORTHO05D003999 5.1e-40 168.3 273 39.2
AUR62003895 Chenopodium quinoa HOM05D003103 ORTHO05D003999 6.7e-40 167.9 274 38.3
Phvul.003G243000 Phaseolus vulgaris HOM05D003103 ORTHO05D003999 6.7e-40 167.9 271 39.5
PGSC0003DMG400004012 Solanum tuberosum HOM05D003103 ORTHO05D003999 6.7e-40 167.9 274 38.7
Atru.chr3.305 Acer truncatum HOM05D003103 ORTHO05D003999 8.8e-40 167.5 274 39.4
MD15G1285500 Malus domestica HOM05D003103 ORTHO05D003999 8.8e-40 167.5 298 38.9
MSTRG.3432 Avicennia marina HOM05D003103 ORTHO05D003999 1.5e-39 166.8 247 40.5
Glyma.05G094000 Glycine max HOM05D003103 ORTHO05D003999 1.5e-39 166.8 271 39.1
Solyc02g093290.3 Solanum lycopersicum HOM05D003103 ORTHO05D003999 1.5e-39 166.8 274 38.3
Sopen02g037850 Solanum pennellii HOM05D003103 ORTHO05D003999 1.5e-39 166.8 274 38.3
AUR62001914 Chenopodium quinoa HOM05D003103 ORTHO05D003999 2.0e-39 166.4 272 38.2
Prupe.7G131500 Prunus persica HOM05D003103 ORTHO05D003999 2.0e-39 166.4 296 39.2
Glyma.01G187500 Glycine max HOM05D003103 ORTHO05D003999 3.3e-39 165.6 276 39.1
Psat2g166720 Pisum sativum HOM05D003103 ORTHO05D003999 3.3e-39 165.6 276 38.8
SEGI_29401 Sequoiadendron giganteum HOM05D003103 ORTHO05D003999 3.3e-39 165.6 275 38.5
Nn5g30339 Nelumbo nucifera HOM05D003103 ORTHO05D003999 4.3e-39 165.2 248 40.7
VMungo0251G1095 Vigna mungo HOM05D003103 ORTHO05D003999 7.4e-39 164.5 271 39.5
CANSAT01G0334 Cannabis sativa HOM05D003103 ORTHO05D003999 9.7e-39 164.1 274 38.0
CARHR293030 Cardamine hirsuta HOM05D003103 ORTHO05D003999 9.7e-39 164.1 273 38.8
Thhalv10000109m.g Eutrema salsugineum HOM05D003103 ORTHO05D003999 9.7e-39 164.1 272 38.6
HPP92_009260 Vanilla planifolia HOM05D003103 ORTHO05D003999 9.7e-39 164.1 275 38.9
Aa31LG6G14040 Aethionema arabicum HOM05D003103 ORTHO05D003999 1.3e-38 163.7 273 38.5
Ciclev10025298m.g Citrus clementina HOM05D003103 ORTHO05D003999 1.3e-38 163.7 274 39.1
Nitab4.5_0002029g0060 Nicotiana tabacum HOM05D003103 ORTHO05D003999 1.3e-38 163.7 274 37.6
arahy.Tifrunner.gnm1.ann1.WH2MYH Arachis hypogaea HOM05D003103 ORTHO05D003999 1.7e-38 163.3 249 40.6
AL4G13330 Arabidopsis lyrata HOM05D003103 ORTHO05D003999 2.8e-38 162.5 273 38.1
AT2G23420 Arabidopsis thaliana HOM05D003103 ORTHO05D003999 2.8e-38 162.5 273 38.1
BcaNung05429 Brassica carinata HOM05D003103 ORTHO05D003999 2.8e-38 162.5 279 38.4
ClCG02G012340 Citrullus lanatus HOM05D003103 ORTHO05D003999 2.8e-38 162.5 279 38.7
Medtr5g017050 Medicago truncatula HOM05D003103 ORTHO05D003999 2.8e-38 162.5 276 38.0
Sp4g02410 Schrenkiella parvula HOM05D003103 ORTHO05D003999 2.8e-38 162.5 273 38.1
Aqoxy6G01280 Aquilegia oxysepala HOM05D003103 ORTHO05D003999 3.7e-38 162.2 296 37.8
BcaC07g40987 Brassica carinata HOM05D003103 ORTHO05D003999 3.7e-38 162.2 273 38.1
A09p56930 Brassica napus HOM05D003103 ORTHO05D003999 3.7e-38 162.2 273 38.1
C08p39890 Brassica napus HOM05D003103 ORTHO05D003999 3.7e-38 162.2 273 38.1
BolC8t51562H Brassica oleracea HOM05D003103 ORTHO05D003999 3.7e-38 162.2 273 38.1
BraA09t41085Z Brassica rapa HOM05D003103 ORTHO05D003999 3.7e-38 162.2 273 38.1
SGA_v2.0_scaffold62G21520 Striga asiatica HOM05D003103 ORTHO05D003999 3.7e-38 162.2 275 37.8
HanXRQChr07g0187961 Helianthus annuus HOM05D003103 ORTHO05D003999 4.8e-38 161.8 288 37.2
Carub.0004s0262 Capsella rubella HOM05D003103 ORTHO05D003999 8.2e-38 161.0 273 38.1
CARHR245570 Cardamine hirsuta HOM05D003103 ORTHO05D003999 8.2e-38 161.0 273 38.8
CDE08G1087 Ceratophyllum demersum HOM05D003103 ORTHO05D003999 8.2e-38 161.0 268 39.6
RcHm_v2.0_Chr7g0236011 Rosa chinensis HOM05D003103 ORTHO05D003999 8.2e-38 161.0 250 40.8
Phvul.002G017800 Phaseolus vulgaris HOM05D003103 ORTHO05D003999 1.1e-37 160.6 264 38.3
TPR.G26868 Trifolium pratense HOM05D003103 ORTHO05D003999 1.1e-37 160.6 274 38.3
VMungo1215G3025 Vigna mungo HOM05D003103 ORTHO05D003999 1.4e-37 160.2 263 39.5
Thhalv10024704m.g Eutrema salsugineum HOM05D003103 ORTHO05D003999 1.8e-37 159.8 278 38.1
Zm00001eb422480 Zea mays HOM05D003103 ORTHO05D003999 3.1e-37 159.1 275 38.5
AT4G36940 Arabidopsis thaliana HOM05D003103 ORTHO05D003999 4.1e-37 158.7 273 38.1
Sp7g34830 Schrenkiella parvula HOM05D003103 ORTHO05D003999 4.1e-37 158.7 278 37.8
Os04g0429800 Oryza sativa ssp. japonica HOM05D003103 ORTHO05D003999 5.3e-37 158.3 273 38.1
AL7G13700 Arabidopsis lyrata HOM05D003103 ORTHO05D003999 1.2e-36 157.1 273 37.7
vmacro17957 Vaccinium macrocarpon HOM05D003103 ORTHO05D003999 1.2e-36 157.1 326 35.3
Aa31LG7G13580 Aethionema arabicum HOM05D003103 ORTHO05D003999 1.0e-35 154.1 281 37.7
Carub.0007s0312 Capsella rubella HOM05D003103 ORTHO05D003999 1.0e-35 154.1 273 37.4
A03p64960 Brassica napus HOM05D003103 ORTHO05D003999 2.9e-35 152.5 287 36.9
C07p62250 Brassica napus HOM05D003103 ORTHO05D003999 2.9e-35 152.5 287 36.9
BolC7t46641H Brassica oleracea HOM05D003103 ORTHO05D003999 2.9e-35 152.5 287 36.9
BraA03t15555Z Brassica rapa HOM05D003103 ORTHO05D003999 2.9e-35 152.5 287 36.9
Ca_24758_v3 Cicer arietinum L. HOM05D003103 ORTHO05D003999 5.0e-35 151.8 274 37.6
Sabra07G0040400 Salix brachista HOM05D003103 ORTHO05D003999 5.0e-35 151.8 305 35.1
ATR0584G122 Amborella trichopoda HOM05D003103 ORTHO05D003999 3.2e-34 149.1 274 37.2
AagrBONN_evm.TU.Sc2ySwM_344.1320 Anthoceros agrestis HOM05D003103 ORTHO05D003999 9.4e-34 147.5 278 35.3
Lj4C151G10 Lonicera japonica HOM05D003103 ORTHO05D003999 1.6e-33 146.7 107 68.2
Dinv30000 Davidia involucrata HOM05D003103 ORTHO05D003999 3.6e-33 145.6 80 86.2
CSS0023497 Camellia sinensis var. sinensis HOM05D003103 ORTHO05D003999 4.7e-33 145.2 284 35.9
FAN23G0049 Fragaria x ananassa HOM05D003103 ORTHO05D003999 6.1e-33 144.8 263 38.8
FAN26G0572 Fragaria x ananassa HOM05D003103 ORTHO05D003999 1.8e-32 143.3 263 38.4
Lj7C70G24 Lonicera japonica HOM05D003103 ORTHO05D003999 1.8e-32 143.3 107 68.2
SMO358G0676 Selaginella moellendorffii HOM05D003103 ORTHO05D003999 2.3e-32 142.9 285 34.0
GSVIVG01022112001 Vitis vinifera HOM05D003103 ORTHO05D003999 8.8e-32 141.0 107 67.3
PSO541G2306 Papaver somniferum HOM05D003103 ORTHO05D003999 1.1e-31 140.6 109 65.1
Sed0023462 Sechium edule HOM05D003103 ORTHO05D003999 1.1e-31 140.6 107 65.4
Gohir.D12G070200 Gossypium hirsutum HOM05D003103 ORTHO05D003999 1.5e-31 140.2 123 60.2
Hund16344 Selenicereus undatus HOM05D003103 ORTHO05D003999 1.5e-31 140.2 107 65.4
TAR625G1079 Trochodendron aralioides HOM05D003103 ORTHO05D003999 1.5e-31 140.2 80 81.2
Migut.H00421 Erythranthe guttata HOM05D003103 ORTHO05D003999 3.3e-31 139.0 107 66.4
Gorai.008G077200 Gossypium raimondii HOM05D003103 ORTHO05D003999 4.4e-31 138.7 123 59.3
HanXRQChr12g0381311 Helianthus annuus HOM05D003103 ORTHO05D003999 7.4e-31 137.9 107 64.5
Pp3c24_5980 Physcomitrium patens HOM05D003103 ORTHO05D003999 7.4e-31 137.9 295 33.6
FvH4_1g16212 Fragaria vesca HOM05D003103 ORTHO05D003999 1.3e-30 137.1 107 67.3
FAN28G1880 Fragaria x ananassa HOM05D003103 ORTHO05D003999 1.3e-30 137.1 107 67.3
Gohir.A12G072300 Gossypium hirsutum HOM05D003103 ORTHO05D003999 1.3e-30 137.1 107 65.4
Nn1g04803 Nelumbo nucifera HOM05D003103 ORTHO05D003999 1.3e-30 137.1 107 66.4
PSO675G0324 Papaver somniferum HOM05D003103 ORTHO05D003999 1.3e-30 137.1 109 65.1
Gohir.A11G193300 Gossypium hirsutum HOM05D003103 ORTHO05D003999 1.7e-30 136.7 107 67.3
Gohir.D11G200400 Gossypium hirsutum HOM05D003103 ORTHO05D003999 1.7e-30 136.7 107 67.3
Gorai.007G214700 Gossypium raimondii HOM05D003103 ORTHO05D003999 1.7e-30 136.7 107 67.3
DCAR_010882 Daucus carota HOM05D003103 ORTHO05D003999 2.2e-30 136.3 82 78.0
Potri.007G045400 Populus trichocarpa HOM05D003103 ORTHO05D003999 2.8e-30 136.0 107 64.5
PGR102G2176 Punica granatum HOM05D003103 ORTHO05D003999 2.8e-30 136.0 107 66.4
MELO3C020858.2 Cucumis melo HOM05D003103 ORTHO05D003999 3.7e-30 135.6 112 63.4
CsaV3_2G016480 Cucumis sativus L. HOM05D003103 ORTHO05D003999 3.7e-30 135.6 112 63.4
arahy.Tifrunner.gnm1.ann1.556YNA Arachis hypogaea HOM05D003103 ORTHO05D003999 6.3e-30 134.8 107 63.6
RcHm_v2.0_Chr2g0105921 Rosa chinensis HOM05D003103 ORTHO05D003999 6.3e-30 134.8 107 66.4
Actinidia16477 Actinidia chinensis HOM05D003103 ORTHO05D003999 1.1e-29 134.0 107 66.4
Lsat_1_v5_gn_2_84981 Lactuca sativa HOM05D003103 ORTHO05D003999 1.1e-29 134.0 107 63.6
Lsat_1_v5_gn_3_89301 Lactuca sativa HOM05D003103 ORTHO05D003999 1.1e-29 134.0 107 63.6
Actinidia03793 Actinidia chinensis HOM05D003103 ORTHO05D003999 2.4e-29 132.9 107 65.4
Actinidia12044 Actinidia chinensis HOM05D003103 ORTHO05D003999 2.4e-29 132.9 107 64.5
CAN.G11.2 Capsicum annuum HOM05D003103 ORTHO05D003999 4.1e-29 132.1 107 64.5
Manes.12G104000 Manihot esculenta HOM05D003103 ORTHO05D003999 5.3e-29 131.7 107 63.6
SalBow5G1645 Salvia bowleyana HOM05D003103 ORTHO05D003999 5.3e-29 131.7 107 62.6
SalBow5G5600 Salvia bowleyana HOM05D003103 ORTHO05D003999 7.0e-29 131.3 109 61.5
Peaxi162Scf00685g00413 Petunia axillaris HOM05D003103 ORTHO05D003999 2.0e-28 129.8 107 61.7
Sed0020253 Sechium edule HOM05D003103 ORTHO05D003999 2.6e-28 129.4 107 63.6
SGA_v2.0_scaffold15G07323 Striga asiatica HOM05D003103 ORTHO05D003999 2.6e-28 129.4 80 72.5
CSS0011350 Camellia sinensis var. sinensis HOM05D003103 ORTHO05D003999 3.5e-28 129.0 107 63.6
ECA238G1051 Erigeron canadensis HOM05D003103 ORTHO05D003999 5.9e-28 128.3 107 60.7
HanXRQChr14g0449051 Helianthus annuus HOM05D003103 ORTHO05D003999 5.9e-28 128.3 107 60.7
arahy.Tifrunner.gnm1.ann1.6SC4JI Arachis hypogaea HOM05D003103 ORTHO05D003999 1.7e-27 126.7 122 56.6
arahy.Tifrunner.gnm1.ann1.Q9CK1R Arachis hypogaea HOM05D003103 ORTHO05D003999 2.2e-27 126.3 80 76.2
Solyc03g044430.3 Solanum lycopersicum HOM05D003103 ORTHO05D003999 2.2e-27 126.3 107 58.9
Sopen03g008560 Solanum pennellii HOM05D003103 ORTHO05D003999 2.2e-27 126.3 107 58.9
Nitab4.5_0001064g0060 Nicotiana tabacum HOM05D003103 ORTHO05D003999 8.5e-27 124.4 98 66.3
Nitab4.5_0002646g0010 Nicotiana tabacum HOM05D003103 ORTHO05D003999 8.5e-27 124.4 98 66.3
RcHm_v2.0_Chr1g0342971 Rosa chinensis HOM05D003103 ORTHO05D003999 1.1e-26 124.0 109 62.4
Ah.03g145530 Amaranthus hybridus HOM05D003103 ORTHO05D003999 2.5e-26 122.9 216 36.6
Haze_15380 Corylus avellana HOM05D003103 ORTHO05D003999 4.2e-26 122.1 95 66.3
Glyma.17G172500 Glycine max HOM05D003103 ORTHO05D003999 7.2e-26 121.3 123 54.5
SMO143G0022 Selaginella moellendorffii HOM05D003103 ORTHO05D003999 9.4e-26 120.9 256 32.4
Rhsim08G0099700 Rhododendron simsii HOM05D003103 ORTHO05D003999 1.6e-25 120.2 127 54.3
Mapoly0010s0215 Marchantia polymorpha HOM05D003103 ORTHO05D003999 8.8e-24 114.4 135 47.4
Peaxi162Scf00450g00126 Petunia axillaris HOM05D003103 ORTHO05D003999 5.7e-23 111.7 285 30.5
CBR_g54878 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-22 109.0 101 49.5
Mapoly0013s0004 Marchantia polymorpha HOM05D003103 ORTHO05D003999 1.6e-20 103.6 83 59.0
arahy.Tifrunner.gnm1.ann1.I75AMJ Arachis hypogaea HOM05D003103 ORTHO05D003999 3.2e-18 95.9 76 60.5
FAN20G1533 Fragaria x ananassa HOM05D003103 ORTHO05D003999 3.6e-17 92.4 45 88.9
Sabra05G0111100 Salix brachista HOM05D003103 ORTHO05D003999 4.7e-17 92.0 45 88.9
unitig_899.g14948 Utricularia gibba HOM05D003103 ORTHO05D003999 1.0e-16 90.9 57 75.4
MCO01G563 Micromonas commoda HOM05D003103 ORTHO05D003999 1.4e-16 90.5 110 44.5
HPP92_025048 Vanilla planifolia HOM05D003103 ORTHO05D003999 1.4e-16 90.5 43 100.0
PRCOL_00006024 Prasinoderma coloniale HOM05D003103 ORTHO05D003999 3.0e-16 89.4 82 52.4
Ah.16g102310 Amaranthus hybridus HOM05D003103 ORTHO05D019548 5.2e-16 88.6 59 72.9
Zm00001eb082880 Zea mays HOM05D003103 ORTHO05D003999 5.7e-15 85.1 80 52.5
Ah.11g043650 Amaranthus hybridus HOM05D001940 ORTHO05D002352 1.3e-14 84.0 73 57.5
Ah.04g159760 Amaranthus hybridus HOM05D003103 ORTHO05D011068 3.7e-14 82.4 73 57.5
Haze_26099 Corylus avellana HOM05D003103 ORTHO05D003999 1.7e-11 73.6 224 25.4
Ah.12g055970 Amaranthus hybridus HOM05D003103 ORTHO05D011068 5.0e-11 72.0 48 70.8
SEGI_12894 Sequoiadendron giganteum HOM05D003103 ORTHO05D003999 5.0e-11 72.0 34 91.2
vmacro09123 Vaccinium macrocarpon HOM05D003103 ORTHO05D003999 1.5e-10 70.5 45 71.1
vmacro22986 Vaccinium macrocarpon HOM05D003103 ORTHO05D003999 1.5e-10 70.5 45 71.1
Mapoly0023s0018 Marchantia polymorpha HOM05D003103 ORTHO05D003999 1.9e-10 70.1 62 54.8
SEGI_11101 Sequoiadendron giganteum HOM05D003103 ORTHO05D003999 2.5e-10 69.7 36 83.3
Ah.01g009720 Amaranthus hybridus HOM05D000001 ORTHO05D000003 7.2e-10 68.2 65 58.5
Haze_26163 Corylus avellana HOM05D003103 ORTHO05D003999 4.7e-09 65.5 43 62.8
HPP92_025050 Vanilla planifolia HOM05D003103 ORTHO05D430557 8.8e-08 61.2 48 68.8
unitig_899.g14947 Utricularia gibba HOM05D003103 ORTHO05D003999 9.8e-07 57.8 61 50.8
Sabra05G0111200 Salix brachista HOM05D003103 ORTHO05D003999 1.3e-06 57.4 77 45.5


User provided reference genes

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