Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 9.7e-39 162.9 78 100.0
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 2.9e-11 71.6 74 52.7
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 1.5e-10 69.3 74 51.4
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 1.9e-10 68.9 74 51.4
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 3.3e-10 68.2 74 52.7
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 3.3e-10 68.2 74 51.4
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 7.3e-10 67.0 74 50.0
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 7.3e-10 67.0 74 51.4
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 7.3e-10 67.0 74 48.6
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 9.5e-10 66.6 74 50.0
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 1.2e-09 66.2 74 50.0
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 1.6e-09 65.9 45 71.1
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 1.6e-09 65.9 74 50.0
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 1.6e-09 65.9 74 50.0
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 2.1e-09 65.5 74 48.6
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 2.1e-09 65.5 74 50.0
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 2.1e-09 65.5 74 48.6
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 2.1e-09 65.5 74 50.0
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 2.1e-09 65.5 74 51.4
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 2.1e-09 65.5 44 70.5
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 2.8e-09 65.1 43 72.1
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 2.8e-09 65.1 74 50.0
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 2.8e-09 65.1 74 48.6
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 2.8e-09 65.1 74 50.0
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 2.8e-09 65.1 75 52.0
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 2.8e-09 65.1 74 48.6
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 2.8e-09 65.1 74 50.0
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 3.6e-09 64.7 74 48.6
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 3.6e-09 64.7 74 51.4
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 3.6e-09 64.7 74 50.0
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 3.6e-09 64.7 74 50.0
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 3.6e-09 64.7 74 50.0
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 4.7e-09 64.3 74 48.6
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 4.7e-09 64.3 74 48.6
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 4.7e-09 64.3 74 48.6
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 4.7e-09 64.3 74 48.6
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 4.7e-09 64.3 74 48.6
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 6.2e-09 63.9 74 47.3
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 6.2e-09 63.9 74 48.6
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 6.2e-09 63.9 74 50.0
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 8.0e-09 63.5 74 47.3
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 8.0e-09 63.5 74 47.3
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 8.0e-09 63.5 74 47.3
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 8.0e-09 63.5 74 48.6
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 8.0e-09 63.5 74 47.3
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 1.0e-08 63.2 74 50.0
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 1.0e-08 63.2 74 45.9
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 1.0e-08 63.2 74 47.3
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 1.0e-08 63.2 74 48.6
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 1.0e-08 63.2 74 47.3
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 1.0e-08 63.2 75 49.3
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 1.4e-08 62.8 44 68.2
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 1.4e-08 62.8 74 48.6
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 1.4e-08 62.8 74 50.0
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 1.8e-08 62.4 74 48.6
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 1.8e-08 62.4 74 47.3
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 1.8e-08 62.4 74 47.3
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 1.8e-08 62.4 74 47.3
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 1.8e-08 62.4 50 62.0
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 1.8e-08 62.4 74 45.9
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 2.3e-08 62.0 78 46.2
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 2.3e-08 62.0 74 45.9
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 2.3e-08 62.0 74 47.3
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 2.3e-08 62.0 74 45.9
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 2.3e-08 62.0 74 45.9
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 2.3e-08 62.0 74 47.3
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 2.3e-08 62.0 74 47.3
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 2.3e-08 62.0 74 50.0
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 2.3e-08 62.0 74 50.0
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 3.1e-08 61.6 74 47.3
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 3.1e-08 61.6 74 47.3
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 4.0e-08 61.2 74 47.3
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 4.0e-08 61.2 74 47.3
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 4.0e-08 61.2 74 47.3
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 5.2e-08 60.8 74 48.6
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 5.2e-08 60.8 74 47.3
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 5.2e-08 60.8 74 47.3
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 5.2e-08 60.8 74 45.9
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 5.2e-08 60.8 74 45.9
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 5.2e-08 60.8 74 45.9
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 5.2e-08 60.8 74 48.6
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 6.8e-08 60.5 74 47.3
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 6.8e-08 60.5 74 47.3
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 6.8e-08 60.5 74 45.9
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 6.8e-08 60.5 74 45.9
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 6.8e-08 60.5 74 47.3
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 6.8e-08 60.5 45 64.4
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 6.8e-08 60.5 74 47.3
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 8.9e-08 60.1 74 47.3
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 1.2e-07 59.7 74 45.9
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 1.2e-07 59.7 74 45.9
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 1.2e-07 59.7 74 45.9
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 1.5e-07 59.3 74 45.9
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 1.5e-07 59.3 74 45.9
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.5e-07 59.3 74 45.9
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.5e-07 59.3 74 45.9
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 1.5e-07 59.3 74 45.9
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 2.0e-07 58.9 74 45.9
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 2.0e-07 58.9 74 45.9
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 2.0e-07 58.9 74 45.9
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 2.6e-07 58.5 74 45.9
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 2.6e-07 58.5 74 45.9
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 2.6e-07 58.5 74 45.9
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 2.6e-07 58.5 74 44.6
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 2.6e-07 58.5 74 44.6
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 2.6e-07 58.5 74 44.6
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 2.6e-07 58.5 74 44.6
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 2.6e-07 58.5 74 44.6
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 2.6e-07 58.5 74 44.6
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 3.4e-07 58.2 76 44.7
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 3.4e-07 58.2 74 44.6
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 3.4e-07 58.2 74 45.9
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 9.8e-07 56.6 70 47.1
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 1.3e-06 56.2 74 44.6
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 1.3e-06 56.2 74 43.2
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 2.2e-06 55.5 74 43.2
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 2.2e-06 55.5 75 44.0
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 2.9e-06 55.1 74 40.5
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 2.9e-06 55.1 74 40.5
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 2.9e-06 55.1 73 46.6
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 3.7e-06 54.7 74 40.5
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 4.9e-06 54.3 74 40.5


User provided reference genes

Program Settings