Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 0.0e+00 1609.7 826 100.0
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 7.0e-244 847.8 784 57.4
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 2.0e-243 846.3 841 54.7
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 1.3e-242 843.6 909 51.4
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 7.2e-241 837.8 842 54.3
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 4.4e-238 828.6 823 54.1
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.6e-235 820.1 780 56.9
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 7.7e-235 817.8 797 55.8
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 5.5e-233 811.6 775 57.4
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 1.8e-231 806.6 768 56.6
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 1.8e-231 806.6 840 53.5
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 6.7e-231 804.7 780 55.6
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 1.5e-230 803.5 861 52.3
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 3.3e-230 802.4 779 56.6
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 2.2e-229 799.7 777 55.2
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 4.8e-229 798.5 775 53.5
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.1e-228 797.3 779 56.2
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 1.8e-228 796.6 768 56.4
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 7.0e-228 794.7 778 55.8
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 1.2e-227 793.9 786 55.9
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 3.5e-227 792.3 779 55.5
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 1.3e-226 790.4 746 58.3
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 1.7e-226 790.0 764 56.3
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 3.8e-226 788.9 782 56.1
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 3.8e-226 788.9 781 55.4
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 5.5e-225 785.0 782 55.5
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 2.7e-224 782.7 755 56.3
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 6.8e-223 778.1 777 53.8
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 7.5e-222 774.6 776 54.0
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 9.8e-222 774.2 778 53.6
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 6.3e-221 771.5 765 54.9
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 8.3e-221 771.2 779 53.3
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.1e-220 770.8 851 50.9
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 3.1e-220 769.2 780 54.9
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 5.4e-220 768.5 757 53.2
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 5.4e-220 768.5 780 53.5
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 9.1e-220 767.7 776 53.9
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.2e-219 767.3 929 48.1
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 5.9e-219 765.0 776 53.1
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 7.7e-219 764.6 780 54.0
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 1.7e-218 763.5 776 53.4
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 2.9e-218 762.7 857 51.3
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 3.8e-218 762.3 763 53.3
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 5.0e-218 761.9 780 53.6
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 5.0e-218 761.9 761 53.9
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 1.1e-217 760.8 780 53.6
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 1.5e-217 760.4 779 53.9
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 4.2e-217 758.8 778 53.0
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 5.5e-217 758.4 779 52.4
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 9.5e-217 757.7 773 53.6
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 9.5e-217 757.7 785 53.0
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 1.6e-216 756.9 768 53.4
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 1.6e-216 756.9 777 51.6
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 8.0e-216 754.6 801 51.4
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 8.0e-216 754.6 777 53.3
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 4.0e-215 752.3 760 51.3
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 4.0e-215 752.3 769 52.8
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.5e-214 750.4 795 52.7
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 7.5e-214 748.0 806 51.6
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 1.7e-213 746.9 777 53.9
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 1.7e-213 746.9 796 52.9
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.4e-212 743.8 794 52.6
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 9.2e-212 741.1 775 52.6
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 3.5e-211 739.2 763 52.2
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 3.8e-210 735.7 769 52.8
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 5.0e-210 735.3 775 50.8
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 3.3e-209 732.6 763 51.9
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 1.2e-208 730.7 784 52.6
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 6.1e-208 728.4 834 48.8
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 3.4e-206 722.6 834 49.0
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 5.4e-204 715.3 759 51.9
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 2.3e-202 709.9 784 50.9
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 3.9e-202 709.1 820 49.5
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 2.5e-201 706.4 800 50.8
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 4.3e-201 705.7 763 51.4
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 1.2e-200 704.1 724 52.3
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 4.7e-200 702.2 834 48.2
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 1.9e-196 690.3 760 49.1
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 2.1e-195 686.8 865 46.4
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.7e-195 686.4 760 49.7
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 2.7e-195 686.4 758 50.3
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 4.6e-195 685.6 760 48.9
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 6.0e-195 685.3 836 47.8
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 3.9e-194 682.6 767 49.8
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 1.9e-193 680.2 771 49.5
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 6.2e-192 675.2 760 48.7
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 2.3e-191 673.3 770 49.9
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 4.6e-179 632.5 769 47.2
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 2.3e-178 630.2 945 42.4
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 1.3e-170 604.4 838 42.7
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 2.3e-170 603.6 757 45.2
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 3.9e-170 602.8 851 43.4
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 3.9e-170 602.8 851 43.4
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 3.9e-170 602.8 779 45.4
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 2.6e-166 590.1 613 51.1
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 9.6e-161 571.6 854 42.3
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.9e-157 560.1 663 48.7
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 1.4e-156 557.8 792 43.3
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 4.6e-155 552.7 434 64.7
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 1.1e-153 548.1 751 42.5
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 4.3e-153 546.2 647 49.8
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 1.3e-152 544.7 682 47.1
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 7.6e-150 535.4 724 43.4
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 2.3e-146 523.9 633 47.7
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.2e-136 490.7 426 58.7
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 1.2e-134 485.0 392 61.5
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 3.0e-130 470.3 633 45.2
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 1.7e-120 438.0 566 46.8
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 1.2e-118 431.8 533 50.5
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 2.2e-117 427.6 572 45.1
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 3.7e-112 410.2 516 47.9
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 5.2e-98 363.2 260 64.6
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 6.1e-91 339.7 538 41.8
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 1.1e-66 259.2 194 61.3
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 5.2e-66 256.9 226 60.6
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 7.6e-65 253.1 340 42.9
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 1.6e-59 235.3 165 68.5
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 2.7e-54 218.0 203 53.2
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 5.8e-49 200.3 162 61.7
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 2.0e-41 175.3 128 60.9
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.0e-40 172.9 118 70.3
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 2.5e-39 168.3 126 61.1
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 1.2e-38 166.0 143 54.5
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 7.6e-33 146.7 397 29.5
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 9.3e-31 139.8 210 38.1
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 7.9e-30 136.7 99 64.6
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-29 136.0 157 40.1
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.9e-28 132.1 113 61.1
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 3.2e-23 114.8 86 61.6
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 4.6e-22 110.9 96 57.3
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.0e-21 109.8 85 62.4
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.1e-20 106.3 74 68.9
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 3.3e-20 104.8 542 22.1
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 9.7e-20 103.2 149 37.6
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 3.1e-18 98.2 100 45.0
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 6.9e-18 97.1 88 48.9
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 6.1e-14 84.0 324 26.5
CSS0013106 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D011186 6.7e-13 80.5 56 60.7
CiPaw.09G027900 Carya illinoinensis HOM05D004031 ORTHO05D011186 6.7e-13 80.5 54 61.1
Nn7g35951 Nelumbo nucifera HOM05D004031 ORTHO05D011186 1.5e-12 79.3 54 61.1
GSVIVG01033459001 Vitis vinifera HOM05D004031 ORTHO05D011186 2.0e-12 79.0 54 63.0
Potri.016G060550 Populus trichocarpa HOM05D004031 ORTHO05D011186 3.3e-12 78.2 52 67.3
Manes.09G038400 Manihot esculenta HOM05D004031 ORTHO05D011186 5.7e-12 77.4 52 65.4
Nn7g36859 Nelumbo nucifera HOM05D004031 ORTHO05D011186 5.7e-12 77.4 54 61.1
Eucgr.K01857 Eucalyptus grandis HOM05D004031 ORTHO05D011186 1.7e-11 75.9 53 60.4
MD12G1054200 Malus domestica HOM05D004031 ORTHO05D011186 1.7e-11 75.9 54 59.3
Prupe.7G082600 Prunus persica HOM05D004031 ORTHO05D011186 1.7e-11 75.9 54 59.3
CDE05G3199 Ceratophyllum demersum HOM05D004031 ORTHO05D011186 2.2e-11 75.5 52 61.5
Thecc.05G176000 Theobroma cacao HOM05D004031 ORTHO05D011186 4.8e-11 74.3 52 59.6
Glyma.19G150500 Glycine max HOM05D004031 ORTHO05D011186 6.3e-11 73.9 57 57.9
MELO3C009606.2 Cucumis melo HOM05D004031 ORTHO05D011186 8.2e-11 73.6 56 55.4
Gohir.D01G124600 Gossypium hirsutum HOM05D004031 ORTHO05D011186 1.1e-10 73.2 52 57.7
Hma1.2p1_0124F.1_g058300 Hydrangea macrophylla HOM05D004031 ORTHO05D011186 1.1e-10 73.2 52 65.4
Sed0024429 Sechium edule HOM05D004031 ORTHO05D011186 1.4e-10 72.8 51 58.8
Migut.J01860 Erythranthe guttata HOM05D004031 ORTHO05D011186 1.8e-10 72.4 53 58.5
Medtr7g093770 Medicago truncatula HOM05D004031 ORTHO05D011186 1.8e-10 72.4 50 62.0
Phvul.001G144800 Phaseolus vulgaris HOM05D004031 ORTHO05D011186 1.8e-10 72.4 55 60.0
Gohir.A01G137400 Gossypium hirsutum HOM05D004031 ORTHO05D011186 3.1e-10 71.6 52 55.8
RcHm_v2.0_Chr3g0479131 Rosa chinensis HOM05D004031 ORTHO05D011186 5.3e-10 70.9 54 51.9
Lalb_Chr15g0079141 Lupinus albus HOM05D004031 ORTHO05D011186 7.0e-10 70.5 55 60.0
Lj1g0020490 Lotus japonicus HOM05D004031 ORTHO05D011186 1.6e-09 69.3 55 56.4
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.6e-09 69.3 47 70.2
Duzib128G0401 Durio zibethinus HOM05D004031 ORTHO05D011186 5.9e-09 67.4 52 55.8
Cc06_g15560 Coffea canephora HOM05D004031 ORTHO05D011186 7.7e-09 67.0 63 47.6
Glyma.03G147100 Glycine max HOM05D004031 ORTHO05D011186 1.3e-08 66.2 50 58.0
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 8.5e-08 63.5 58 50.0
Hund07844 Selenicereus undatus HOM05D004031 ORTHO05D006678 1.1e-07 63.2 91 44.0
A03p37430 Brassica napus HOM05D004031 ORTHO05D011186 1.9e-07 62.4 55 52.7
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 7.2e-07 60.5 74 45.9
Carub.0003s1134 Capsella rubella HOM05D004031 ORTHO05D011186 9.4e-07 60.1 54 50.0
Aa31LG3G5450 Aethionema arabicum HOM05D004031 ORTHO05D011186 2.1e-06 58.9 54 50.0
Aa31LG3G5490 Aethionema arabicum HOM05D004031 ORTHO05D011186 3.6e-06 58.2 54 50.0


User provided reference genes

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