Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024761 Vanilla planifolia HOM05D004052 ORTHO05D004694 6.5e-139 497.7 302 100.0
HPP92_020289 Vanilla planifolia HOM05D004052 ORTHO05D004694 4.3e-18 96.3 381 31.0
QL04p070259 Quercus lobata HOM05D004052 ORTHO05D004694 2.4e-16 90.5 381 30.7
MBI10_g30421_MAGBIO Magnolia biondii HOM05D004052 ORTHO05D004694 1.1e-13 81.6 391 33.8
Nn3g20784 Nelumbo nucifera HOM05D004052 ORTHO05D004694 1.1e-13 81.6 386 35.5
PSO541G0468 Papaver somniferum HOM05D004052 ORTHO05D004694 1.1e-13 81.6 373 30.6
PSO675G8138 Papaver somniferum HOM05D004052 ORTHO05D004694 1.9e-13 80.9 374 29.4
GSVIVG01038086001 Vitis vinifera HOM05D004052 ORTHO05D004694 7.2e-13 79.0 359 29.5
Prupe.4G148800 Prunus persica HOM05D004052 ORTHO05D004694 1.6e-12 77.8 377 28.6
FAN21G2550 Fragaria x ananassa HOM05D004052 ORTHO05D004694 2.1e-12 77.4 371 26.7
Cpa.g.sc77.96 Carica papaya HOM05D004052 ORTHO05D004694 3.5e-12 76.6 357 35.3
FAN16G0069 Fragaria x ananassa HOM05D004052 ORTHO05D004694 3.5e-12 76.6 371 26.7
A06p13030 Brassica napus HOM05D004052 ORTHO05D004694 4.6e-12 76.3 301 29.6
Ah.06g187480 Amaranthus hybridus HOM05D004052 ORTHO05D004694 6.1e-12 75.9 358 28.5
MD05G1208600 Malus domestica HOM05D004052 ORTHO05D004694 7.9e-12 75.5 375 28.5
Migut.H02078 Erythranthe guttata HOM05D004052 ORTHO05D004694 1.0e-11 75.1 325 27.1
FvH4_3g16600 Fragaria vesca HOM05D004052 ORTHO05D004694 1.0e-11 75.1 371 26.7
FAN11G2946 Fragaria x ananassa HOM05D004052 ORTHO05D004694 1.0e-11 75.1 371 26.7
HanXRQChr12g0373561 Helianthus annuus HOM05D004052 ORTHO05D004694 1.8e-11 74.3 347 31.4
Manes.15G101600 Manihot esculenta HOM05D004052 ORTHO05D004694 2.3e-11 73.9 380 27.4
Eucgr.L01015 Eucalyptus grandis HOM05D004052 ORTHO05D004694 3.0e-11 73.6 323 29.7
MD10G1195100 Malus domestica HOM05D004052 ORTHO05D004694 3.9e-11 73.2 363 28.7
Sabra16G0248900 Salix brachista HOM05D004052 ORTHO05D004694 3.9e-11 73.2 374 28.6
CDE10G0657 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 6.7e-11 72.4 337 30.3
Potri.001G377900 Populus trichocarpa HOM05D004052 ORTHO05D004694 6.7e-11 72.4 363 29.5
Oeu001302.1 Olea europaea HOM05D004052 ORTHO05D004694 2.5e-10 70.5 184 35.3
RcHm_v2.0_Chr5g0027741 Rosa chinensis HOM05D004052 ORTHO05D004694 2.5e-10 70.5 375 26.9
Aa31LG4G2530 Aethionema arabicum HOM05D004052 ORTHO05D004694 7.4e-10 68.9 320 27.8
CANSAT94G0014 Cannabis sativa HOM05D004052 ORTHO05D004694 9.7e-10 68.6 374 27.0
Eucgr.L01921 Eucalyptus grandis HOM05D004052 ORTHO05D004694 9.7e-10 68.6 344 29.1
HanXRQChr10g0305751 Helianthus annuus HOM05D004052 ORTHO05D004694 9.7e-10 68.6 370 36.5
Nn4g26569 Nelumbo nucifera HOM05D004052 ORTHO05D004694 1.6e-09 67.8 399 31.6
Ca_03392_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 2.2e-09 67.4 351 27.6
Ca_29679_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 2.2e-09 67.4 351 27.6
Eucgr.E02731 Eucalyptus grandis HOM05D004052 ORTHO05D004694 2.8e-09 67.0 326 29.1
TAR629G3304 Trochodendron aralioides HOM05D004052 ORTHO05D004694 3.7e-09 66.6 374 30.2
Gohir.D01G029700 Gossypium hirsutum HOM05D004052 ORTHO05D004694 4.8e-09 66.2 374 29.1
MD14G1047200 Malus domestica HOM05D004052 ORTHO05D004694 4.8e-09 66.2 154 37.0
Gorai.002G038800 Gossypium raimondii HOM05D004052 ORTHO05D004694 8.2e-09 65.5 374 29.1
Atru.chr2.1894 Acer truncatum HOM05D004052 ORTHO05D004694 1.1e-08 65.1 374 27.0
AT1G78430 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 1.8e-08 64.3 325 29.2
DCAR_019621 Daucus carota HOM05D004052 ORTHO05D004694 1.8e-08 64.3 202 31.7
ECA234G3832 Erigeron canadensis HOM05D004052 ORTHO05D004694 3.1e-08 63.5 366 26.8
Manes.03G091016 Manihot esculenta HOM05D004052 ORTHO05D004694 3.1e-08 63.5 388 35.1
Aqoxy7G03971 Aquilegia oxysepala HOM05D004052 ORTHO05D004694 4.1e-08 63.2 372 30.4
TAR627G0253 Trochodendron aralioides HOM05D004052 ORTHO05D004694 4.1e-08 63.2 305 29.2
Lsat_1_v5_gn_5_125041 Lactuca sativa HOM05D004052 ORTHO05D004694 5.3e-08 62.8 365 28.8
Zm00001eb152670 Zea mays HOM05D004052 ORTHO05D004694 6.9e-08 62.4 375 29.6
unitig_46.g18300 Utricularia gibba HOM05D004052 ORTHO05D004694 9.0e-08 62.0 338 26.3
Nitab4.5_0001662g0050 Nicotiana tabacum HOM05D004052 ORTHO05D004694 1.2e-07 61.6 368 26.6
FAN05G1417 Fragaria x ananassa HOM05D000666 ORTHO05D001727 1.5e-07 61.2 163 33.1
Phvul.005G060700 Phaseolus vulgaris HOM05D004052 ORTHO05D004694 2.6e-07 60.5 371 26.7
Ah.04g163830 Amaranthus hybridus HOM05D004052 ORTHO05D004694 3.4e-07 60.1 351 26.8
A09p60580 Brassica napus HOM05D004052 ORTHO05D004694 3.4e-07 60.1 354 26.0
Dinv13312 Davidia involucrata HOM05D004052 ORTHO05D004694 3.4e-07 60.1 369 26.3
FAN14G2440 Fragaria x ananassa HOM05D000666 ORTHO05D001727 3.4e-07 60.1 163 33.1
RcHm_v2.0_Chr5g0061061 Rosa chinensis HOM05D000666 ORTHO05D001727 3.4e-07 60.1 160 33.1
ATR0730G143 Amborella trichopoda HOM05D004052 ORTHO05D004694 4.5e-07 59.7 125 38.4
EL10Ac4g08490 Beta vulgaris HOM05D004052 ORTHO05D004694 4.5e-07 59.7 347 27.1
Sp1g15260 Schrenkiella parvula HOM05D004052 ORTHO05D004694 4.5e-07 59.7 360 27.5
FAN25G0821 Fragaria x ananassa HOM05D000666 ORTHO05D001727 5.9e-07 59.3 185 32.4
PSO339G6671 Papaver somniferum HOM05D000666 ORTHO05D001727 5.9e-07 59.3 162 34.0
AL1G29350 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 7.7e-07 58.9 362 26.8
Duzib093G0204 Durio zibethinus HOM05D000666 ORTHO05D001727 7.7e-07 58.9 159 32.7
PSO063G3058 Papaver somniferum HOM05D000666 ORTHO05D001727 7.7e-07 58.9 162 34.0
Peaxi162Scf00111g00086 Petunia axillaris HOM05D004052 ORTHO05D004694 7.7e-07 58.9 387 32.3
PGR031G1077 Punica granatum HOM05D004052 ORTHO05D004694 7.7e-07 58.9 376 25.0
Thecc.05G054100 Theobroma cacao HOM05D000666 ORTHO05D001727 7.7e-07 58.9 122 34.4
Actinidia03751 Actinidia chinensis HOM05D000666 ORTHO05D001727 1.0e-06 58.5 278 28.4
BcaC07g41439 Brassica carinata HOM05D004052 ORTHO05D004694 1.0e-06 58.5 355 26.8
FAN09G4646 Fragaria x ananassa HOM05D000666 ORTHO05D001727 1.0e-06 58.5 163 31.9
FAN16G2424 Fragaria x ananassa HOM05D000666 ORTHO05D001727 1.0e-06 58.5 185 32.4
MSTRG.12848 Avicennia marina HOM05D004052 ORTHO05D004694 1.3e-06 58.2 377 25.5
BcaC05g25666 Brassica carinata HOM05D004052 ORTHO05D004694 1.3e-06 58.2 355 26.8
BraA06t24462Z Brassica rapa HOM05D004052 ORTHO05D004694 1.3e-06 58.2 351 27.4
FvH4_6g15372 Fragaria vesca HOM05D000666 ORTHO05D001727 1.3e-06 58.2 163 31.9
BcaC07g41402 Brassica carinata HOM05D004052 ORTHO05D004694 1.7e-06 57.8 359 25.9
CDE02G2317 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 1.7e-06 57.8 348 24.4
Eucgr.E02738 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.7e-06 57.8 255 30.2
VMungo0720G2549 Vigna mungo HOM05D000666 ORTHO05D001727 1.7e-06 57.8 164 32.3
Glyma.13G259200 Glycine max HOM05D004052 ORTHO05D004694 2.2e-06 57.4 369 26.8
BolC8t51952H Brassica oleracea HOM05D004052 ORTHO05D004694 2.9e-06 57.0 354 26.6
CANSAT80G0496 Cannabis sativa HOM05D000666 ORTHO05D001727 2.9e-06 57.0 129 34.1
CARHR017680 Cardamine hirsuta HOM05D004052 ORTHO05D004694 2.9e-06 57.0 362 26.5
Ca_08827_v3 Cicer arietinum L. HOM05D000666 ORTHO05D001727 2.9e-06 57.0 181 32.0
Ciclev10020573m.g Citrus clementina HOM05D004052 ORTHO05D004694 2.9e-06 57.0 384 27.3
Lalb_Chr01g0019011 Lupinus albus HOM05D000666 ORTHO05D001727 2.9e-06 57.0 316 27.2
PGSC0003DMG400027647 Solanum tuberosum HOM05D004052 ORTHO05D004694 2.9e-06 57.0 375 28.8
A07p27520 Brassica napus HOM05D004052 ORTHO05D004694 3.8e-06 56.6 333 26.4
BraA09t41428Z Brassica rapa HOM05D004052 ORTHO05D004694 3.8e-06 56.6 353 25.5
Ca_01645_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 3.8e-06 56.6 353 31.7
Gohir.A04G046520 Gossypium hirsutum HOM05D004052 ORTHO05D004694 3.8e-06 56.6 365 26.3
Gorai.009G359700 Gossypium raimondii HOM05D004052 ORTHO05D004694 3.8e-06 56.6 354 27.1
Hma1.2p1_1456F.1_g284600 Hydrangea macrophylla HOM05D004052 ORTHO05D004694 3.8e-06 56.6 377 24.7
TPR.G30249 Trifolium pratense HOM05D000666 ORTHO05D001727 3.8e-06 56.6 159 35.2
Nitab4.5_0005556g0010 Nicotiana tabacum HOM05D000666 ORTHO05D001727 5.0e-06 56.2 162 32.7
TAR636G1469 Trochodendron aralioides HOM05D000666 ORTHO05D001727 5.0e-06 56.2 283 27.2
BraA07t30394Z Brassica rapa HOM05D004052 ORTHO05D004694 6.5e-06 55.8 333 26.4
CAN.G552.2 Capsicum annuum HOM05D000666 ORTHO05D001727 6.5e-06 55.8 162 30.9
FAN11G0949 Fragaria x ananassa HOM05D000666 ORTHO05D001727 6.5e-06 55.8 281 28.1
Solyc11g072490.2 Solanum lycopersicum HOM05D000666 ORTHO05D001727 6.5e-06 55.8 162 32.1
Sopen11g030140 Solanum pennellii HOM05D000666 ORTHO05D001727 6.5e-06 55.8 162 32.1
C08p44040 Brassica napus HOM05D004052 ORTHO05D004694 8.5e-06 55.5 359 26.2
Medtr7g061150 Medicago truncatula HOM05D000666 ORTHO05D001727 8.5e-06 55.5 163 32.5
Medtr7g100730 Medicago truncatula HOM05D000666 ORTHO05D001727 8.5e-06 55.5 163 32.5


User provided reference genes

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