Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 3.4e-89 331.6 170 100.0
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 2.4e-18 96.3 148 43.2
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 9.3e-18 94.4 141 40.4
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 9.3e-18 94.4 141 40.4
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 1.2e-17 94.0 152 40.8
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 3.5e-17 92.4 149 41.6
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 3.5e-17 92.4 145 42.1
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 7.8e-17 91.3 141 39.7
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 7.8e-17 91.3 142 40.8
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 1.7e-16 90.1 151 43.7
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 3.0e-16 89.4 144 43.1
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 3.9e-16 89.0 147 41.5
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 6.6e-16 88.2 153 42.5
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 1.5e-15 87.0 149 42.3
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 1.9e-15 86.7 146 39.7
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 2.5e-15 86.3 148 42.6
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 2.5e-15 86.3 149 42.3
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 4.3e-15 85.5 142 42.3
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 5.6e-15 85.1 148 39.9
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 5.6e-15 85.1 146 39.7
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 7.3e-15 84.7 145 40.7
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 7.3e-15 84.7 149 40.9
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 1.3e-14 84.0 148 39.9
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 2.1e-14 83.2 148 39.9
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 2.1e-14 83.2 144 43.1
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 2.1e-14 83.2 152 42.8
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 2.8e-14 82.8 149 40.3
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 2.8e-14 82.8 145 39.3
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 3.6e-14 82.4 147 40.8
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 3.6e-14 82.4 151 38.4
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 6.2e-14 81.6 152 41.4
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 1.1e-13 80.9 149 41.6
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 1.4e-13 80.5 150 38.0
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 1.4e-13 80.5 147 38.1
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.4e-13 80.5 156 41.7
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 1.8e-13 80.1 156 40.4
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 1.8e-13 80.1 149 38.9
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 2.4e-13 79.7 149 41.6
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 3.1e-13 79.3 142 40.8
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 3.1e-13 79.3 152 38.2
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 4.0e-13 79.0 149 40.9
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 4.0e-13 79.0 144 38.9
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 5.3e-13 78.6 140 38.6
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 5.3e-13 78.6 149 41.6
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 5.3e-13 78.6 151 41.7
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 6.9e-13 78.2 141 41.1
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 6.9e-13 78.2 149 38.9
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 9.0e-13 77.8 144 38.2
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 1.2e-12 77.4 152 37.5
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 1.2e-12 77.4 149 39.6
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 1.5e-12 77.0 148 40.5
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 2.6e-12 76.3 151 39.1
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 3.4e-12 75.9 148 39.9
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 3.4e-12 75.9 144 37.5
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 3.4e-12 75.9 154 37.7
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 4.5e-12 75.5 147 38.1
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 4.5e-12 75.5 148 36.5
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 5.8e-12 75.1 153 35.9
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 5.8e-12 75.1 154 39.6
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 5.8e-12 75.1 153 36.6
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 5.8e-12 75.1 145 35.9
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 7.6e-12 74.7 150 35.3
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 7.6e-12 74.7 152 41.4
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 9.9e-12 74.3 148 37.8
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 9.9e-12 74.3 150 38.0
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 9.9e-12 74.3 154 37.7
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 1.3e-11 73.9 148 39.2
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 1.3e-11 73.9 154 37.7
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 1.7e-11 73.6 146 39.7
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 1.7e-11 73.6 148 39.2
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 1.7e-11 73.6 143 37.1
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 1.7e-11 73.6 151 38.4
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 2.2e-11 73.2 144 39.6
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 2.2e-11 73.2 141 37.6
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 2.2e-11 73.2 154 35.7
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 2.2e-11 73.2 143 39.2
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 2.2e-11 73.2 160 40.0
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 2.2e-11 73.2 149 40.3
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 2.2e-11 73.2 141 36.2
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 6.4e-11 71.6 156 35.9
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 2.4e-10 69.7 148 36.5
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 3.2e-10 69.3 153 36.6
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 5.4e-10 68.6 148 34.5
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 7.1e-10 68.2 147 38.1
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 9.3e-10 67.8 144 38.9
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 9.3e-10 67.8 147 36.1
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 1.6e-09 67.0 151 36.4
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 1.6e-09 67.0 144 35.4
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 2.1e-09 66.6 153 37.3
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 3.5e-09 65.9 160 36.9
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 1.0e-08 64.3 143 35.0
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 2.3e-08 63.2 150 35.3
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 2.3e-08 63.2 147 35.4
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 5.1e-08 62.0 145 36.6
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 5.1e-08 62.0 155 35.5
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 2.5e-07 59.7 142 34.5
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 3.3e-07 59.3 147 35.4
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 5.6e-07 58.5 146 37.0
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 7.4e-07 58.2 150 34.0
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 7.4e-07 58.2 150 34.0
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 7.4e-07 58.2 150 34.0
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 1.3e-06 57.4 148 35.8
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.1e-06 56.6 35 68.6
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 3.7e-06 55.8 41 61.0
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 6.2e-06 55.1 35 68.6


User provided reference genes

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