Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024671 Vanilla planifolia HOM05D003076 ORTHO05D004355 4.2e-310 1067.4 613 100.0
HPP92_024668 Vanilla planifolia HOM05D003076 ORTHO05D004355 5.8e-171 605.1 375 99.7
HPP92_009909 Vanilla planifolia HOM05D003076 ORTHO05D004355 8.2e-125 451.8 654 46.5
HPP92_024669 Vanilla planifolia HOM05D003076 ORTHO05D004355 7.8e-67 259.2 161 87.0
Ciclev10004416m.g Citrus clementina HOM05D003076 ORTHO05D004355 8.7e-42 176.0 723 27.8
Manes.03G147800 Manihot esculenta HOM05D003076 ORTHO05D004355 1.1e-41 175.6 678 30.2
EL10Ac3g07486 Beta vulgaris HOM05D003076 ORTHO05D004355 1.3e-40 172.2 660 31.1
Sabra17G0046700 Salix brachista HOM05D003076 ORTHO05D004355 6.3e-40 169.9 705 27.0
Sabra17G0048900 Salix brachista HOM05D003076 ORTHO05D004355 2.4e-39 167.9 741 27.0
Atru.chr4.1704 Acer truncatum HOM05D003076 ORTHO05D004355 1.0e-37 162.5 723 27.1
Lj3A413T40 Lonicera japonica HOM05D003076 ORTHO05D004355 8.5e-37 159.5 620 29.4
Hma1.2p1_0187F.1_g082140 Hydrangea macrophylla HOM05D003076 ORTHO05D004355 1.4e-36 158.7 699 30.3
Dinv38235 Davidia involucrata HOM05D003076 ORTHO05D004355 1.2e-35 155.6 766 26.5
TAR633G0799 Trochodendron aralioides HOM05D003076 ORTHO05D004355 7.9e-35 152.9 772 29.8
Ah.13g078140 Amaranthus hybridus HOM05D001261 ORTHO05D001130 1.3e-34 152.1 672 27.8
Sc13g0000180 Simmondsia chinensis HOM05D003076 ORTHO05D004355 2.3e-34 151.4 740 27.3
Lj6C557T2 Lonicera japonica HOM05D003076 ORTHO05D004355 3.9e-34 150.6 634 27.6
Actinidia39966 Actinidia chinensis HOM05D003076 ORTHO05D004355 1.9e-33 148.3 707 29.3
ATR1145G039 Amborella trichopoda HOM05D003076 ORTHO05D004355 2.5e-33 147.9 750 27.9
Hund18993 Selenicereus undatus HOM05D003076 ORTHO05D004355 9.7e-33 146.0 701 28.0
MSTRG.4218 Avicennia marina HOM05D003076 ORTHO05D004355 2.8e-32 144.4 695 27.8
CSS0040323 Camellia sinensis var. sinensis HOM05D003076 ORTHO05D004355 2.8e-32 144.4 678 25.4
GSVIVG01021064001 Vitis vinifera HOM05D003076 ORTHO05D004355 2.8e-32 144.4 748 26.1
MD04G1008700 Malus domestica HOM05D003076 ORTHO05D004355 8.2e-32 142.9 705 30.2
Oeu045308.1 Olea europaea HOM05D003076 ORTHO05D004355 1.1e-31 142.5 725 26.5
Duzib212G0641 Durio zibethinus HOM05D003076 ORTHO05D004355 1.4e-31 142.1 704 27.6
Potri.017G055100 Populus trichocarpa HOM05D003076 ORTHO05D004355 1.8e-31 141.7 714 26.5
Prupe.1G008000 Prunus persica HOM05D003076 ORTHO05D004355 2.4e-31 141.4 738 26.7
Peaxi162Scf00652g00217 Petunia axillaris HOM05D003076 ORTHO05D004355 9.1e-31 139.4 713 27.5
HanXRQChr14g0435971 Helianthus annuus HOM05D003076 ORTHO05D004355 1.2e-30 139.0 614 27.2
Nn3g19973 Nelumbo nucifera HOM05D003076 ORTHO05D004355 3.4e-30 137.5 422 32.7
CAN.G767.39 Capsicum annuum HOM05D003076 ORTHO05D004355 7.7e-30 136.3 700 27.4
Nitab4.5_0000850g0060 Nicotiana tabacum HOM05D003076 ORTHO05D004355 7.7e-30 136.3 686 28.6
CiPaw.01G121100 Carya illinoinensis HOM05D003076 ORTHO05D004355 1.0e-29 136.0 763 25.7
Eucgr.H00053 Eucalyptus grandis HOM05D003076 ORTHO05D004355 1.0e-29 136.0 758 25.7
vmacro15529 Vaccinium macrocarpon HOM05D003076 ORTHO05D004355 1.7e-29 135.2 673 26.6
Actinidia11415 Actinidia chinensis HOM05D003076 ORTHO05D004355 3.8e-29 134.0 695 27.3
Sed0025050 Sechium edule HOM05D003076 ORTHO05D004355 1.1e-28 132.5 694 26.1
Aqoxy2G03870 Aquilegia oxysepala HOM05D003076 ORTHO05D004355 1.4e-28 132.1 714 27.2
CSS0027357 Camellia sinensis var. sinensis HOM05D003076 ORTHO05D004355 1.4e-28 132.1 713 24.3
DCAR_026612 Daucus carota HOM05D003076 ORTHO05D004355 1.4e-28 132.1 747 24.5
Sed0024186 Sechium edule HOM05D003076 ORTHO05D004355 2.5e-28 131.3 703 25.6
Gohir.D02G123700 Gossypium hirsutum HOM05D003076 ORTHO05D004355 2.1e-27 128.3 688 26.3
Cpa.g.sc8.149 Carica papaya HOM05D003076 ORTHO05D004355 3.6e-27 127.5 672 27.7
Lsat_1_v5_gn_2_44920 Lactuca sativa HOM05D003076 ORTHO05D004355 7.9e-27 126.3 330 33.3
Potri.002G242900 Populus trichocarpa HOM05D003076 ORTHO05D004355 7.9e-27 126.3 665 26.0
AL7G42940 Arabidopsis lyrata HOM05D003076 ORTHO05D004355 1.0e-26 125.9 643 27.2
MELO3C006310.2 Cucumis melo HOM05D003912 ORTHO05D004409 1.0e-26 125.9 700 25.0
SalBow8G0497 Salvia bowleyana HOM05D003076 ORTHO05D004355 3.9e-26 124.0 685 29.9
Manes.03G147900 Manihot esculenta HOM05D003076 ORTHO05D004355 2.6e-25 121.3 685 25.4
BraA04t16545Z Brassica rapa HOM05D003076 ORTHO05D004355 3.3e-25 120.9 611 26.5
Hma1.2p1_1407F.1_g281460 Hydrangea macrophylla HOM05D003076 ORTHO05D004355 4.4e-25 120.6 641 29.8
Thecc.04G204200 Theobroma cacao HOM05D003076 ORTHO05D004355 4.4e-25 120.6 720 26.1
Aa31LG9G4010 Aethionema arabicum HOM05D003076 ORTHO05D004355 5.7e-25 120.2 653 26.5
Gorai.005G130500 Gossypium raimondii HOM05D003076 ORTHO05D004355 9.7e-25 119.4 666 25.8
MD10G1163900 Malus domestica HOM05D003076 ORTHO05D004355 1.3e-24 119.0 672 27.5
Migut.G00682 Erythranthe guttata HOM05D003076 ORTHO05D004355 1.7e-24 118.6 448 31.7
Cfa002575 Carpinus fangiana HOM05D003076 ORTHO05D004355 2.2e-24 118.2 682 27.4
Nitab4.5_0000676g0140 Nicotiana tabacum HOM05D003076 ORTHO05D004355 3.7e-24 117.5 653 30.8
Sp7g11340 Schrenkiella parvula HOM05D003076 ORTHO05D004355 3.7e-24 117.5 640 26.6
CDE05G1978 Ceratophyllum demersum HOM05D003076 ORTHO05D004355 4.8e-24 117.1 344 33.1
ClCG05G003300 Citrullus lanatus HOM05D003076 ORTHO05D004355 4.8e-24 117.1 708 25.0
Gorai.006G222500 Gossypium raimondii HOM05D003076 ORTHO05D004355 4.8e-24 117.1 649 28.4
Manes.15G053700 Manihot esculenta HOM05D003076 ORTHO05D004355 4.8e-24 117.1 680 26.3
Gohir.A09G205200 Gossypium hirsutum HOM05D003076 ORTHO05D004355 1.1e-23 115.9 638 28.4
QL06p024679 Quercus lobata HOM05D003076 ORTHO05D004355 1.1e-23 115.9 694 24.2
Duzib138G1925 Durio zibethinus HOM05D003076 ORTHO05D004355 1.4e-23 115.5 613 27.4
Cc03_g07810 Coffea canephora HOM05D003076 ORTHO05D004355 2.4e-23 114.8 736 25.7
CiPaw.03G148900 Carya illinoinensis HOM05D003076 ORTHO05D004355 4.1e-23 114.0 662 25.5
FAN07G2438 Fragaria x ananassa HOM05D003076 ORTHO05D004355 5.3e-23 113.6 693 25.0
THA.LOC104808713 Tarenaya hassleriana HOM05D003076 ORTHO05D004355 6.9e-23 113.2 641 25.3
TAR362G0760 Trochodendron aralioides HOM05D003076 ORTHO05D004355 9.1e-23 112.8 689 29.3
Sabra02G0185000 Salix brachista HOM05D003076 ORTHO05D004355 1.2e-22 112.5 662 24.9
Cfa014915 Carpinus fangiana HOM05D003076 ORTHO05D004355 2.0e-22 111.7 748 27.5
Sopen12g033160 Solanum pennellii HOM05D003076 ORTHO05D004355 2.6e-22 111.3 683 26.2
Gohir.A03G094400 Gossypium hirsutum HOM05D003076 ORTHO05D004355 5.9e-22 110.2 681 27.3
AUR62020823 Chenopodium quinoa HOM05D003076 ORTHO05D004355 1.0e-21 109.4 618 28.0
Haze_11609 Corylus avellana HOM05D003076 ORTHO05D004355 1.0e-21 109.4 748 26.9
FvH4_4g15740 Fragaria vesca HOM05D003076 ORTHO05D004355 1.3e-21 109.0 700 25.7
Prupe.8G202200 Prunus persica HOM05D003076 ORTHO05D004355 1.3e-21 109.0 545 26.1
Solyc12g098380.3 Solanum lycopersicum HOM05D003076 ORTHO05D004355 1.7e-21 108.6 685 26.0
AT4G13630 Arabidopsis thaliana HOM05D003076 ORTHO05D004355 2.2e-21 108.2 604 25.7
Gohir.D09G198866 Gossypium hirsutum HOM05D003076 ORTHO05D004355 2.9e-21 107.8 347 32.0
BcaC02g09401 Brassica carinata HOM05D003076 ORTHO05D004355 3.8e-21 107.5 619 26.8
Ciclev10019391m.g Citrus clementina HOM05D003076 ORTHO05D004355 3.8e-21 107.5 636 27.2
Haze_24807 Corylus avellana HOM05D003076 ORTHO05D004355 6.5e-21 106.7 674 27.3
BcaB03g16063 Brassica carinata HOM05D003076 ORTHO05D004355 1.9e-20 105.1 634 25.9
AUR62018595 Chenopodium quinoa HOM05D003076 ORTHO05D004355 1.9e-20 105.1 609 27.3
Manes.12G045100 Manihot esculenta HOM05D003076 ORTHO05D004355 3.2e-20 104.4 625 26.4
BolC4t25806H Brassica oleracea HOM05D003076 ORTHO05D004355 5.5e-20 103.6 625 26.7
Thecc.01G224900 Theobroma cacao HOM05D003076 ORTHO05D004355 5.5e-20 103.6 643 25.2
COL.COLO4_15685 Corchorus olitorius HOM05D003076 ORTHO05D004355 7.2e-20 103.2 651 25.2
Duzib133G0416 Durio zibethinus HOM05D003076 ORTHO05D004355 2.7e-19 101.3 650 24.8
Carub.0007s2890 Capsella rubella HOM05D003076 ORTHO05D004355 4.7e-19 100.5 624 27.2
RcHm_v2.0_Chr4g0415341 Rosa chinensis HOM05D003076 ORTHO05D004355 4.7e-19 100.5 713 24.8
Nn1g07867 Nelumbo nucifera HOM05D003076 ORTHO05D004355 6.1e-19 100.1 194 40.7
PGR044G0349 Punica granatum HOM05D003076 ORTHO05D004355 3.0e-18 97.8 638 26.0
Manes.13G047500 Manihot esculenta HOM05D003076 ORTHO05D004355 3.9e-18 97.4 341 27.6
Duzib211G0454 Durio zibethinus HOM05D003076 ORTHO05D004355 8.8e-18 96.3 624 26.8
RcHm_v2.0_Chr6g0284791 Rosa chinensis HOM05D003076 ORTHO05D004355 1.1e-17 95.9 397 30.2
Sed0016344 Sechium edule HOM05D003076 ORTHO05D004355 2.0e-17 95.1 355 29.6
arahy.Tifrunner.gnm1.ann1.D2J5MW Arachis hypogaea HOM05D003076 ORTHO05D004355 2.6e-17 94.7 395 29.1
Thhalv10024808m.g Eutrema salsugineum HOM05D003076 ORTHO05D004355 2.6e-17 94.7 618 25.4
Oeu022111.1 Olea europaea HOM05D003076 ORTHO05D004355 4.4e-17 94.0 381 30.2
unitig_92.g28198 Utricularia gibba HOM05D003076 ORTHO05D003111 4.4e-17 94.0 420 24.8
CARHR219340 Cardamine hirsuta HOM05D003076 ORTHO05D004355 9.7e-17 92.8 625 22.4
HanXRQChr15g0484311 Helianthus annuus HOM05D003076 ORTHO05D004355 9.7e-17 92.8 590 25.3
FAN15G3664 Fragaria x ananassa HOM05D003076 ORTHO05D004355 1.3e-16 92.4 538 26.8
Rhsim02G0057100 Rhododendron simsii HOM05D003076 ORTHO05D004355 1.7e-16 92.0 345 29.0
MD05G1174700 Malus domestica HOM05D003076 ORTHO05D004355 2.2e-16 91.7 353 30.6
FvH4_2g19000 Fragaria vesca HOM05D003076 ORTHO05D004355 4.8e-16 90.5 536 27.2
FAN24G0074 Fragaria x ananassa HOM05D000080 ORTHO05D004355 4.8e-16 90.5 536 27.2
Gohir.A07G200900 Gossypium hirsutum HOM05D003076 ORTHO05D004355 4.8e-16 90.5 639 26.4
Oeu055787.1 Olea europaea HOM05D003076 ORTHO05D004355 6.3e-16 90.1 388 28.1
Gohir.D07G207200 Gossypium hirsutum HOM05D003076 ORTHO05D004355 8.2e-16 89.7 353 29.5
Gorai.001G233600 Gossypium raimondii HOM05D003076 ORTHO05D004355 8.2e-16 89.7 353 29.5
Lj3g0010463 Lotus japonicus HOM05D003076 ORTHO05D004355 1.1e-15 89.4 645 23.9
SGA_v2.0_scaffold300G47761 Striga asiatica HOM05D003076 ORTHO05D004355 1.1e-15 89.4 635 25.8
CsaV3_3G010930 Cucumis sativus L. HOM05D003076 ORTHO05D004355 3.1e-15 87.8 371 26.7
Lalb_Chr12g0209731 Lupinus albus HOM05D003076 ORTHO05D004355 3.1e-15 87.8 346 28.0
Sed0006189 Sechium edule HOM05D003076 ORTHO05D004355 3.1e-15 87.8 339 27.4
Gohir.D02G030500 Gossypium hirsutum HOM05D003076 ORTHO05D004355 9.1e-15 86.3 663 25.8
Gorai.001G186900 Gossypium raimondii HOM05D003076 ORTHO05D004355 1.2e-14 85.9 612 27.0
PGSC0003DMG401004568 Solanum tuberosum HOM05D003076 ORTHO05D004355 2.0e-14 85.1 378 27.5
EL10Ac3g06505 Beta vulgaris HOM05D003076 ORTHO05D004355 5.9e-14 83.6 180 37.8
Glyma.03G081600 Glycine max HOM05D003076 ORTHO05D004355 5.9e-14 83.6 660 24.1
Manes.12G042050 Manihot esculenta HOM05D003076 ORTHO05D004355 5.9e-14 83.6 595 24.9
Gohir.D07G163000 Gossypium hirsutum HOM05D003076 ORTHO05D004355 7.7e-14 83.2 624 25.6
arahy.Tifrunner.gnm1.ann1.FF2036 Arachis hypogaea HOM05D003076 ORTHO05D004355 3.8e-13 80.9 659 25.2
TWI18G1051 Tripterygium wilfordii HOM05D003076 ORTHO05D004355 3.8e-13 80.9 657 25.3
Gorai.005G033800 Gossypium raimondii HOM05D003076 ORTHO05D004355 5.0e-13 80.5 661 25.3
Eucgr.K02163 Eucalyptus grandis HOM05D003076 ORTHO05D004355 6.5e-13 80.1 634 24.1
FAN27G2571 Fragaria x ananassa HOM05D000080 ORTHO05D004355 6.5e-13 80.1 537 25.1
Manes.15G053600 Manihot esculenta HOM05D003076 ORTHO05D004355 8.5e-13 79.7 389 27.5
Glyma.16G093400 Glycine max HOM05D003076 ORTHO05D004355 1.5e-12 79.0 684 23.8
Medtr4g011540 Medicago truncatula HOM05D003076 ORTHO05D004355 2.5e-12 78.2 369 24.7
Psat7g254360 Pisum sativum HOM05D003076 ORTHO05D004355 3.2e-12 77.8 679 25.0
Lalb_Chr07g0194091 Lupinus albus HOM05D003076 ORTHO05D004355 4.2e-12 77.4 657 24.2
THA.LOC104804609 Tarenaya hassleriana HOM05D003076 ORTHO05D004355 4.2e-12 77.4 323 32.2
ClCG09G009000 Citrullus lanatus HOM05D003076 ORTHO05D004355 5.5e-12 77.0 421 27.1
QL09p054132 Quercus lobata HOM05D003076 ORTHO05D004355 1.2e-11 75.9 666 24.0
Cpa.g.sc1068.3 Carica papaya HOM05D003076 ORTHO05D004355 2.1e-11 75.1 181 34.8
TWI75G0955 Tripterygium wilfordii HOM05D003076 ORTHO05D004355 2.7e-11 74.7 679 25.0
MELO3C021024.2 Cucumis melo HOM05D003076 ORTHO05D004355 4.7e-11 73.9 375 25.9
THA.LOC104821650 Tarenaya hassleriana HOM05D003076 ORTHO05D004355 8.0e-11 73.2 333 26.4
CsaV3_7G025980 Cucumis sativus L. HOM05D003076 ORTHO05D004355 1.0e-10 72.8 385 26.0
Atru.chr5.2076 Acer truncatum HOM05D003076 ORTHO05D004355 1.8e-10 72.0 521 26.3
ECA238G0219 Erigeron canadensis HOM05D003076 ORTHO05D004355 1.8e-10 72.0 531 23.9
Gohir.A07G156700 Gossypium hirsutum HOM05D003076 ORTHO05D004355 1.8e-10 72.0 630 23.8
Medtr4g011550 Medicago truncatula HOM05D003076 ORTHO05D004355 1.8e-10 72.0 642 22.0
Ca_07173_v3 Cicer arietinum L. HOM05D003076 ORTHO05D004355 2.0e-09 68.6 357 27.5
BcaC05g24432 Brassica carinata HOM05D003076 ORTHO05D004355 5.7e-09 67.0 355 25.1
A10p03320 Brassica napus HOM05D003076 ORTHO05D004355 7.5e-09 66.6 355 25.9
Thhalv10009864m.g Eutrema salsugineum HOM05D003076 ORTHO05D004355 7.5e-09 66.6 599 21.5
TPR.G38596 Trifolium pratense HOM05D003076 ORTHO05D004355 1.3e-08 65.9 612 23.9
BolC5t29086H Brassica oleracea HOM05D003076 ORTHO05D004355 2.2e-08 65.1 368 25.5
MD13G1285200 Malus domestica HOM05D003076 ORTHO05D004355 2.2e-08 65.1 297 30.6
C05p03040 Brassica napus HOM05D003076 ORTHO05D004355 3.7e-08 64.3 357 24.9
THA.LOC104801032 Tarenaya hassleriana HOM05D003076 ORTHO05D004355 1.8e-07 62.0 685 22.6
Gohir.A02G023200 Gossypium hirsutum HOM05D003076 ORTHO05D004355 5.3e-07 60.5 677 24.2
BcaB02g06894 Brassica carinata HOM05D003076 ORTHO05D004355 3.5e-06 57.8 396 23.0


User provided reference genes

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