Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 0.0e+00 2375.9 1195 100.0
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 5.0e-219 765.8 1282 39.6
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 2.7e-196 690.3 1203 36.6
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 2.4e-189 667.2 1207 36.6
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 9.3e-181 638.6 1224 34.9
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.6e-180 637.9 1217 36.1
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 2.7e-180 637.1 1204 35.4
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 3.5e-180 636.7 1218 36.1
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 7.8e-180 635.6 1224 34.7
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 3.0e-179 633.6 1206 35.2
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 2.8e-177 627.1 1211 35.0
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 1.3e-174 618.2 1211 34.8
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 1.5e-170 604.7 1217 34.3
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 6.2e-169 599.4 1215 34.0
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 6.9e-168 595.9 1206 34.1
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 2.0e-167 594.3 1206 34.1
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 1.7e-166 591.3 1208 33.3
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 1.9e-165 587.8 1214 33.2
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 3.3e-162 577.0 1228 32.7
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 4.3e-162 576.6 1208 34.6
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 6.2e-161 572.8 1043 35.3
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 1.2e-159 568.5 1224 32.9
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 1.5e-159 568.2 1214 33.3
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 7.6e-159 565.8 1214 32.1
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 2.2e-158 564.3 1207 32.1
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 1.9e-157 561.2 1220 32.8
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 3.2e-157 560.5 1196 33.4
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 4.2e-157 560.1 1235 31.7
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 4.3e-154 550.1 1218 33.3
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 5.9e-151 539.7 1229 32.6
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 1.3e-150 538.5 1218 31.7
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 2.9e-150 537.3 1204 32.6
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 2.5e-149 534.3 1223 31.5
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 2.5e-149 534.3 1223 31.5
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 2.1e-148 531.2 1211 32.0
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 1.0e-147 528.9 1223 33.1
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 1.0e-147 528.9 1218 31.1
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 1.9e-146 524.6 1207 31.9
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 2.5e-146 524.2 1238 30.4
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 5.7e-146 523.1 1214 30.7
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 9.7e-146 522.3 1209 31.5
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 1.3e-145 521.9 1217 30.9
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 1.7e-145 521.5 1214 32.6
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 4.8e-145 520.0 1212 31.3
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 6.3e-145 519.6 1213 31.8
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 2.4e-144 517.7 1207 30.9
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 3.1e-144 517.3 1222 32.7
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 9.1e-144 515.8 1219 31.7
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 1.2e-143 515.4 1225 32.5
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 5.9e-143 513.1 1216 31.5
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 1.0e-142 512.3 1198 31.1
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 1.7e-142 511.5 1210 30.9
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 2.9e-142 510.8 1229 31.7
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 2.9e-142 510.8 1203 31.0
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 2.9e-142 510.8 1207 31.2
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 1.1e-141 508.8 1215 31.9
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 1.1e-141 508.8 1245 30.6
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 2.5e-141 507.7 1231 31.3
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 9.4e-141 505.8 1238 31.1
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 9.4e-141 505.8 1207 31.7
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 2.7e-140 504.2 1214 31.1
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 2.3e-139 501.1 1214 30.9
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 8.8e-139 499.2 1220 31.2
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 1.5e-138 498.4 1220 30.6
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 4.4e-138 496.9 1225 31.5
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 3.7e-137 493.8 1216 30.6
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 6.3e-137 493.0 1262 29.4
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 8.2e-137 492.7 1202 30.0
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 5.9e-135 486.5 1211 31.0
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.4e-133 481.9 948 35.5
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 1.4e-133 481.9 1213 30.2
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 3.2e-133 480.7 1211 30.4
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 4.2e-133 480.3 1218 30.5
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 5.5e-133 479.9 1212 30.1
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 1.0e-131 475.7 1142 31.1
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 3.0e-131 474.2 1209 30.2
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 6.7e-131 473.0 1196 30.4
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 1.1e-130 472.2 1208 30.5
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 1.5e-130 471.9 1032 33.6
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 2.0e-130 471.5 1205 30.0
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 4.1e-128 463.8 1214 29.6
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 2.0e-127 461.5 1214 30.4
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 5.9e-127 459.9 1212 30.6
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 1.4e-123 448.7 1198 30.2
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 1.4e-120 438.7 1211 28.7
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 7.5e-114 416.4 1075 30.0
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 1.3e-113 415.6 1195 30.0
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 2.9e-110 404.4 1177 29.3
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 1.8e-107 395.2 1146 27.7
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 3.8e-102 377.5 988 29.5
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 5.8e-90 337.0 956 26.6
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 1.2e-87 329.3 1008 28.2
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 3.4e-82 311.2 1272 25.6
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 2.3e-78 298.5 945 26.9
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 8.6e-78 296.6 671 32.6
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 2.4e-72 278.5 300 50.3
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 4.6e-71 274.2 296 49.7
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 4.6e-71 274.2 304 48.4
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 1.3e-70 272.7 1296 23.5
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 2.3e-70 271.9 300 49.0
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 8.7e-70 270.0 296 49.0
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 1.1e-69 269.6 951 26.2
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 1.9e-69 268.9 366 41.5
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 3.3e-69 268.1 296 49.7
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 4.2e-64 251.1 235 54.5
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 3.3e-61 241.5 930 25.6
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 1.5e-58 232.6 274 46.7
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 5.8e-58 230.7 296 44.9
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 2.1e-55 222.2 1112 23.1
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 7.9e-55 220.3 305 43.0
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 1.8e-54 219.2 931 26.1
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 8.7e-54 216.9 305 42.3
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 1.9e-53 215.7 427 30.7
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 2.5e-53 215.3 242 47.5
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 1.5e-50 206.1 183 54.6
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 2.5e-48 198.7 421 32.1
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 3.5e-47 194.9 357 35.3
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 1.8e-46 192.6 292 39.0
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 2.1e-44 185.7 175 54.3
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 4.8e-44 184.5 641 26.2
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 5.3e-43 181.0 175 53.1
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 3.4e-42 178.3 174 52.3
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 1.8e-38 166.0 175 48.6
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 3.0e-38 165.2 167 52.7
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 2.2e-36 159.1 187 43.3
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 5.3e-35 154.5 406 29.3
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 1.1e-29 136.7 239 38.1
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.8e-27 129.4 479 27.8
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 7.2e-24 117.5 134 50.0
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 3.1e-19 102.1 106 50.0
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 5.3e-19 101.3 456 23.7
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.2e-18 100.1 107 49.5
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 9.4e-16 90.5 278 27.7
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.0e-14 87.0 88 52.3
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 1.5e-13 83.2 108 43.5
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.3e-12 80.1 218 28.0
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 8.2e-12 77.4 126 38.1
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 3.8e-09 68.6 49 63.3
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 1.1e-08 67.0 44 68.2
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 2.5e-08 65.9 80 38.8
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 3.2e-08 65.5 79 39.2
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 5.5e-08 64.7 60 51.7
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 7.2e-08 64.3 44 65.9


User provided reference genes

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