Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024586 Vanilla planifolia HOM05D007358 ORTHO05D009117 1.8e-97 360.1 214 100.0
HPP92_024515 Vanilla planifolia HOM05D000740 ORTHO05D003236 5.5e-94 348.6 214 96.3
GSVIVG01008360001 Vitis vinifera HOM05D007358 ORTHO05D009117 7.8e-16 89.0 212 32.1
Hma1.2p1_0013F.1_g008830 Hydrangea macrophylla HOM05D007358 ORTHO05D009117 1.7e-15 87.8 205 30.2
Psat1g055280 Pisum sativum HOM05D007358 ORTHO05D009117 1.5e-14 84.7 132 32.6
PGR142G1723 Punica granatum HOM05D007358 ORTHO05D009117 1.5e-14 84.7 194 29.9
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 5.6e-14 82.8 198 27.8
Phvul.004G009341 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 7.3e-14 82.4 198 29.3
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 1.2e-13 81.6 131 32.1
Phvul.004G009809 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.6e-13 81.3 198 28.3
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 2.1e-13 80.9 196 31.6
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 4.7e-13 79.7 196 31.6
Phvul.004G009900 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 4.7e-13 79.7 198 27.8
TPR.G14066 Trifolium pratense HOM05D007358 ORTHO05D009117 4.7e-13 79.7 194 27.8
Aa31LG9G1210 Aethionema arabicum HOM05D007358 ORTHO05D009117 6.2e-13 79.3 118 37.3
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 6.2e-13 79.3 217 30.4
Glyma.05G004200 Glycine max HOM05D007358 ORTHO05D009117 6.2e-13 79.3 201 27.9
Lalb_Chr24g0394951 Lupinus albus HOM05D007358 ORTHO05D009117 6.2e-13 79.3 131 30.5
Eucgr.I01754 Eucalyptus grandis HOM05D007358 ORTHO05D009117 8.1e-13 79.0 120 34.2
Lj2g0013463 Lotus japonicus HOM05D007358 ORTHO05D009117 8.1e-13 79.0 195 26.2
Phvul.003G017200 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 8.1e-13 79.0 198 27.3
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 1.1e-12 78.6 217 30.4
VMungo0464G1987 Vigna mungo HOM05D007358 ORTHO05D009117 1.4e-12 78.2 198 27.8
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 2.3e-12 77.4 139 31.7
SalBow6G1669 Salvia bowleyana HOM05D007358 ORTHO05D009117 2.0e-11 74.3 131 29.0
CANSAT64G1792 Cannabis sativa HOM05D007358 ORTHO05D009117 4.4e-11 73.2 188 29.8
Medtr6g005000 Medicago truncatula HOM05D007358 ORTHO05D009117 4.4e-11 73.2 213 25.8
Dinv33449 Davidia involucrata HOM05D007358 ORTHO05D009117 5.8e-11 72.8 84 40.5
Os01g0546700 Oryza sativa ssp. japonica HOM05D057566 ORTHO05D009117 9.9e-11 72.0 186 33.9
Sabra17G0060800 Salix brachista HOM05D007358 ORTHO05D009117 1.3e-10 71.6 133 27.8
CsaV3_5G027190 Cucumis sativus L. HOM05D007358 ORTHO05D009117 1.7e-10 71.2 120 34.2
Ca_04155_v3 Cicer arietinum L. HOM05D007358 ORTHO05D009117 2.2e-10 70.9 91 34.1
Nn2g12649 Nelumbo nucifera HOM05D007358 ORTHO05D009117 3.8e-10 70.1 119 34.5
Hma1.2p1_0013F.1_g008840 Hydrangea macrophylla HOM05D007358 ORTHO05D009117 4.9e-10 69.7 71 43.7
Rhsim11G0131500 Rhododendron simsii HOM05D007358 ORTHO05D009117 4.9e-10 69.7 171 28.7
Potri.017G071600 Populus trichocarpa HOM05D007358 ORTHO05D009117 6.4e-10 69.3 127 28.3
RcHm_v2.0_Chr2g0173011 Rosa chinensis HOM05D007358 ORTHO05D009117 6.4e-10 69.3 124 32.3
Zm00001eb342200 Zea mays HOM05D057566 ORTHO05D009117 6.4e-10 69.3 179 33.0
Haze_14729 Corylus avellana HOM05D007358 ORTHO05D009117 8.4e-10 68.9 120 35.0
ClCG09G019220 Citrullus lanatus HOM05D007358 ORTHO05D009117 1.1e-09 68.6 138 30.4
MSTRG.8212 Avicennia marina HOM05D007358 ORTHO05D009117 1.4e-09 68.2 114 31.6
Oeu037939.3 Olea europaea HOM05D007358 ORTHO05D009117 1.4e-09 68.2 118 32.2
Phvul.004G009641 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.9e-09 67.8 66 40.9
Cpa.g.sc108.57 Carica papaya HOM05D007358 ORTHO05D009117 2.4e-09 67.4 80 37.5
COL.COLO4_29095 Corchorus olitorius HOM05D007358 ORTHO05D009117 3.2e-09 67.0 198 27.8
MD09G1028300 Malus domestica HOM05D007358 ORTHO05D009117 3.2e-09 67.0 117 29.1
SHI16405 Sapria himalayana HOM05D007358 ORTHO05D009117 3.2e-09 67.0 200 24.5
CSS0010405 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 4.1e-09 66.6 183 27.3
Cc09_g03920 Coffea canephora HOM05D007358 ORTHO05D009117 5.4e-09 66.2 113 31.9
Sopen03g003350 Solanum pennellii HOM05D007358 ORTHO05D009117 5.4e-09 66.2 104 38.5
Ciclev10018361m.g Citrus clementina HOM05D007358 ORTHO05D009117 7.1e-09 65.9 181 26.5
FAN04G0278 Fragaria x ananassa HOM05D007358 ORTHO05D009117 7.1e-09 65.9 97 36.1
FAN04G1709 Fragaria x ananassa HOM05D007358 ORTHO05D009117 7.1e-09 65.9 97 36.1
MBI17_g07976_MAGBIO Magnolia biondii HOM05D007358 ORTHO05D009117 7.1e-09 65.9 95 35.8
SGA_v2.0_scaffold122G33180 Striga asiatica HOM05D007358 ORTHO05D009117 7.1e-09 65.9 136 28.7
PGSC0003DMG400009102 Solanum tuberosum HOM05D007358 ORTHO05D009117 9.2e-09 65.5 120 35.0
Solyc03g007390.4 Solanum lycopersicum HOM05D007358 ORTHO05D009117 1.2e-08 65.1 120 34.2
TWI12G0702 Tripterygium wilfordii HOM05D007358 ORTHO05D009117 1.2e-08 65.1 120 30.0
BcaB06g27500 Brassica carinata HOM05D007358 ORTHO05D009117 1.6e-08 64.7 116 35.3
FvH4_5g31860 Fragaria vesca HOM05D007358 ORTHO05D009117 2.1e-08 64.3 137 30.7
QL06p022929 Quercus lobata HOM05D007358 ORTHO05D009117 2.1e-08 64.3 63 41.3
Sed0015079 Sechium edule HOM05D007358 ORTHO05D009117 3.5e-08 63.5 120 30.0
Nitab4.5_0000080g0200 Nicotiana tabacum HOM05D007358 ORTHO05D009117 4.6e-08 63.2 117 34.2
Lj2C1075G10 Lonicera japonica HOM05D007358 ORTHO05D009117 6.0e-08 62.8 72 37.5
Sp7g01520 Schrenkiella parvula HOM05D007358 ORTHO05D009117 1.3e-07 61.6 104 35.6
SEGI_19561 Sequoiadendron giganteum HOM05D007496 ORTHO05D009431 1.3e-07 61.6 114 29.8
Atru.BG.30.p Acer truncatum HOM05D007358 ORTHO05D009117 1.7e-07 61.2 122 32.0
Migut.F01873 Erythranthe guttata HOM05D007358 ORTHO05D009117 2.3e-07 60.8 117 28.2
CSS0022172 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 3.0e-07 60.5 199 24.6
Ah.01g004590 Amaranthus hybridus HOM05D007358 ORTHO05D009117 5.1e-07 59.7 100 36.0
CiPaw.03G042400 Carya illinoinensis HOM05D007358 ORTHO05D009117 5.1e-07 59.7 119 31.1
DCAR_000707 Daucus carota HOM05D007358 ORTHO05D009117 5.1e-07 59.7 63 38.1
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 5.1e-07 59.7 134 29.9
CAN.G108.28 Capsicum annuum HOM05D007358 ORTHO05D009117 8.6e-07 58.9 106 34.9
Thhalv10027688m.g Eutrema salsugineum HOM05D007358 ORTHO05D009117 8.6e-07 58.9 96 32.3
Lsat_1_v5_gn_3_20581 Lactuca sativa HOM05D007358 ORTHO05D009117 8.6e-07 58.9 119 31.9
RcHm_v2.0_Chr5g0076971 Rosa chinensis HOM05D007390 ORTHO05D009114 8.6e-07 58.9 119 34.5
AL7G49460 Arabidopsis lyrata HOM05D007358 ORTHO05D009117 1.5e-06 58.2 99 34.3
FvH4_3g42930 Fragaria vesca HOM05D007390 ORTHO05D009114 1.9e-06 57.8 117 31.6
FAN11G2668 Fragaria x ananassa HOM05D007390 ORTHO05D009114 1.9e-06 57.8 117 31.6
FAN21G2513 Fragaria x ananassa HOM05D007390 ORTHO05D009114 1.9e-06 57.8 117 31.6
HanXRQChr17g0537401 Helianthus annuus HOM05D007358 ORTHO05D009117 1.9e-06 57.8 120 28.3
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 1.9e-06 57.8 114 30.7
Hund17802 Selenicereus undatus HOM05D007358 ORTHO05D009117 2.5e-06 57.4 175 26.9
Sc03g0011070 Simmondsia chinensis HOM05D007358 ORTHO05D009117 2.5e-06 57.4 113 30.1
Manes.17G021400 Manihot esculenta HOM05D007358 ORTHO05D009117 3.3e-06 57.0 130 26.9
SalBow4G3102 Salvia bowleyana HOM05D007390 ORTHO05D009114 4.3e-06 56.6 113 31.0
FAN11G1706 Fragaria x ananassa HOM05D007390 ORTHO05D009114 5.6e-06 56.2 109 33.9
CsaV3_3G042310 Cucumis sativus L. HOM05D007390 ORTHO05D009114 7.3e-06 55.8 133 26.3
CARHR261620 Cardamine hirsuta HOM05D007358 ORTHO05D009117 9.6e-06 55.5 115 27.8


User provided reference genes

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