Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 0.0e+00 1539.2 770 100.0
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 6.6e-172 608.6 655 53.0
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 4.4e-168 595.9 825 47.0
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 5.1e-164 582.4 622 53.1
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 2.4e-161 573.5 648 52.2
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 7.6e-160 568.5 723 48.0
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 9.9e-160 568.2 757 46.0
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 4.9e-159 565.8 636 50.2
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 8.4e-159 565.1 632 50.6
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 1.4e-158 564.3 632 50.6
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 2.4e-158 563.5 682 49.6
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 2.1e-157 560.5 739 47.0
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 2.7e-157 560.1 629 50.6
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 2.7e-157 560.1 733 46.2
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 3.5e-157 559.7 787 43.8
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 1.0e-156 558.1 690 49.0
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 1.7e-156 557.4 790 45.4
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 1.7e-156 557.4 769 45.0
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 6.6e-156 555.4 656 48.3
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 3.3e-155 553.1 649 49.3
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 4.3e-155 552.7 779 46.2
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 9.6e-155 551.6 783 46.4
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 3.6e-154 549.7 634 50.6
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 3.6e-154 549.7 677 48.2
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 4.8e-154 549.3 653 47.8
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 6.2e-154 548.9 749 45.4
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 1.8e-153 547.4 713 47.3
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 2.4e-153 547.0 780 45.5
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 5.3e-153 545.8 614 50.5
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 6.9e-153 545.4 799 43.9
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 9.0e-153 545.0 724 46.1
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 2.0e-152 543.9 702 45.6
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 4.5e-152 542.7 623 49.4
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 7.6e-152 542.0 772 43.3
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 9.9e-152 541.6 789 45.6
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 1.7e-151 540.8 631 48.7
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 2.9e-151 540.0 698 45.1
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 4.9e-151 539.3 634 47.3
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 1.1e-150 538.1 714 45.1
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 3.2e-150 536.6 708 46.8
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 9.3e-150 535.0 700 46.6
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.2e-149 534.6 654 46.9
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 3.5e-149 533.1 785 42.7
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 6.0e-149 532.3 734 45.1
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 1.0e-148 531.6 797 43.2
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 1.0e-148 531.6 755 44.2
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.0e-148 531.6 734 45.6
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 1.0e-148 531.6 702 46.0
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 1.3e-148 531.2 799 43.4
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.8e-148 530.8 729 45.0
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 5.1e-148 529.3 639 47.6
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 1.9e-147 527.3 622 48.1
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 3.3e-147 526.6 654 47.2
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 4.3e-147 526.2 714 45.5
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 5.6e-147 525.8 654 48.9
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 9.6e-147 525.0 627 47.7
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 9.6e-147 525.0 778 42.0
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 9.6e-147 525.0 621 48.5
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 1.6e-146 524.2 796 43.3
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 2.1e-146 523.9 756 43.1
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 2.1e-146 523.9 754 44.4
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 2.8e-146 523.5 618 49.5
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 1.8e-145 520.8 662 47.9
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 5.3e-145 519.2 680 45.6
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 1.5e-144 517.7 749 43.7
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 2.6e-144 516.9 692 45.5
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 7.6e-144 515.4 787 42.7
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 5.5e-142 509.2 678 45.7
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 5.5e-142 509.2 683 45.1
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 1.8e-140 504.2 694 45.5
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 3.0e-140 503.4 625 46.7
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 3.9e-140 503.1 624 46.0
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 5.1e-140 502.7 627 47.4
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 5.1e-140 502.7 582 49.0
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 6.9e-137 492.3 624 46.0
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 2.0e-136 490.7 637 45.2
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 3.4e-136 490.0 624 46.6
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 1.7e-135 487.6 632 45.4
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 8.4e-135 485.3 702 43.3
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 2.5e-134 483.8 629 45.2
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 1.0e-132 478.4 579 48.5
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 3.9e-132 476.5 685 44.2
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 5.1e-132 476.1 633 44.7
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 4.3e-131 473.0 677 43.7
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 7.4e-131 472.2 627 45.3
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 7.4e-131 472.2 627 44.2
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 2.2e-130 470.7 629 44.4
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 2.4e-129 467.2 625 44.2
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.5e-128 464.5 650 43.7
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 5.0e-127 459.5 631 43.6
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 5.5e-126 456.1 472 51.9
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 9.7e-123 445.3 839 37.7
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 3.0e-116 423.7 635 41.7
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 3.3e-107 393.7 630 38.9
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 7.7e-104 382.5 640 37.8
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 5.0e-103 379.8 427 50.6
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.9e-102 377.9 498 42.8
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 1.4e-100 371.7 773 35.8
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.7e-98 364.8 388 48.2
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 5.9e-96 356.3 520 45.0
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 7.5e-83 312.8 559 38.6
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 2.1e-77 294.7 396 41.2
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 6.0e-72 276.6 594 35.9
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 1.3e-71 275.4 808 29.1
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 2.5e-62 244.6 746 30.0
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.6e-61 241.9 455 36.7
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 2.0e-59 235.0 386 43.3
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.3e-45 189.1 231 53.2
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 2.1e-45 188.3 241 45.2
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 3.1e-36 157.9 460 32.0
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 7.6e-35 153.3 582 25.4
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 2.7e-32 144.8 330 34.2
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 1.3e-31 142.5 197 42.1
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 3.9e-31 141.0 621 23.0
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 3.5e-24 117.9 218 40.4
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 1.3e-21 109.4 154 48.1
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 3.2e-17 94.7 133 41.4
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 2.5e-14 85.1 153 42.5
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 9.7e-14 83.2 104 51.9
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 1.3e-13 82.8 65 61.5
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 1.6e-13 82.4 94 55.3
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 6.3e-13 80.5 267 26.2
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 5.9e-11 73.9 95 44.2
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 3.2e-09 68.2 113 45.1
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 1.0e-07 63.2 103 45.6
Migut.H01931 Erythranthe guttata HOM05D000463 ORTHO05D001294 3.0e-07 61.6 56 42.9
Nitab4.5_0013630g0020 Nicotiana tabacum HOM05D000463 ORTHO05D001294 2.0e-06 58.9 56 44.6
Rhsim04G0020400 Rhododendron simsii HOM05D000463 ORTHO05D001294 2.0e-06 58.9 56 42.9
RhsimUnG0031800 Rhododendron simsii HOM05D000463 ORTHO05D001294 2.0e-06 58.9 56 42.9
Phvul.011G157800 Phaseolus vulgaris HOM05D000463 ORTHO05D001294 2.6e-06 58.5 52 46.2
Migut.M00816 Erythranthe guttata HOM05D000463 ORTHO05D001294 3.3e-06 58.2 56 42.9
MSTRG.14363 Avicennia marina HOM05D000463 ORTHO05D001294 4.4e-06 57.8 56 42.9
MSTRG.6838 Avicennia marina HOM05D000463 ORTHO05D001294 4.4e-06 57.8 53 37.7
Dinv08303 Davidia involucrata HOM05D000463 ORTHO05D001294 4.4e-06 57.8 57 42.1
Dinv20167 Davidia involucrata HOM05D000463 ORTHO05D001294 4.4e-06 57.8 57 42.1
Psat0s2135g0040 Pisum sativum HOM05D000463 ORTHO05D001294 4.4e-06 57.8 56 42.9
Actinidia35252 Actinidia chinensis HOM05D000300 ORTHO05D000383 5.7e-06 57.4 57 36.8
Cfa014606 Carpinus fangiana HOM05D000463 ORTHO05D001294 5.7e-06 57.4 99 32.3
Haze_13153 Corylus avellana HOM05D000463 ORTHO05D001294 5.7e-06 57.4 99 32.3
Lj8P156T32 Lonicera japonica HOM05D000463 ORTHO05D001294 5.7e-06 57.4 57 40.4
Oeu019332.1 Olea europaea HOM05D000463 ORTHO05D001294 5.7e-06 57.4 56 39.3
Peaxi162Scf00027g00271 Petunia axillaris HOM05D000463 ORTHO05D001294 5.7e-06 57.4 92 32.6
Sopen07g031390 Solanum pennellii HOM05D000463 ORTHO05D001294 5.7e-06 57.4 95 33.7
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 7.4e-06 57.0 53 41.5
Nitab4.5_0002383g0090 Nicotiana tabacum HOM05D000463 ORTHO05D001294 7.4e-06 57.0 56 42.9
PSO675G0566 Papaver somniferum HOM05D000463 ORTHO05D001294 7.4e-06 57.0 56 42.9
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 9.7e-06 56.6 52 46.2
Hma1.2p1_1738F.1_g299990 Hydrangea macrophylla HOM05D000463 ORTHO05D001294 9.7e-06 56.6 56 41.1
Lalb_Chr19g0134231 Lupinus albus HOM05D000463 ORTHO05D001294 9.7e-06 56.6 75 34.7
Nitab4.5_0000207g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 9.7e-06 56.6 56 42.9


User provided reference genes

Program Settings