Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 0.0e+00 2743.4 1400 100.0
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 0.0e+00 2610.5 1452 93.3
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 3.6e-208 729.9 1504 38.2
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.6e-78 299.3 1542 27.8
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 5.9e-78 297.4 1319 28.4
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.5e-73 282.7 1533 26.6
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 3.3e-68 265.0 1287 27.0
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 1.9e-63 249.2 1285 27.4
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 4.1e-63 248.1 1478 25.6
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 5.4e-63 247.7 1300 25.7
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 5.4e-63 247.7 1286 26.7
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 3.5e-62 245.0 1383 25.3
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 7.8e-62 243.8 1305 26.7
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 8.6e-61 240.4 1289 26.4
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 1.9e-60 239.2 1295 26.0
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 3.3e-60 238.4 1512 26.0
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 5.6e-60 237.7 1362 27.8
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 5.6e-60 237.7 1297 26.1
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 1.8e-58 232.6 1284 27.3
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 3.1e-58 231.9 1469 25.7
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 4.0e-58 231.5 1415 24.6
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 5.2e-58 231.1 1497 24.9
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 5.2e-58 231.1 1289 26.3
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 1.2e-57 229.9 1322 25.6
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 7.5e-57 227.3 1526 25.1
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.3e-56 226.5 1280 26.0
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 2.9e-56 225.3 1533 24.7
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 3.2e-55 221.9 1298 25.5
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 5.4e-55 221.1 1297 26.1
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 7.1e-55 220.7 1292 26.3
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 2.1e-54 219.2 1401 25.4
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.5e-54 218.4 1295 25.9
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.3e-53 216.5 1267 25.6
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 1.2e-51 209.9 1331 24.6
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 1.2e-51 209.9 1313 27.0
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 2.8e-51 208.8 1279 25.7
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 6.2e-51 207.6 1294 25.2
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 8.1e-51 207.2 1288 26.8
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 1.1e-50 206.8 1563 24.5
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 2.3e-50 205.7 1508 23.7
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 8.9e-50 203.8 1243 25.7
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 8.9e-50 203.8 1276 25.9
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 1.2e-49 203.4 1304 25.2
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 1.2e-49 203.4 1266 25.9
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.2e-49 203.4 1286 25.0
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 1.2e-49 203.4 1435 25.5
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 2.0e-49 202.6 1339 25.9
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 2.6e-49 202.2 1318 25.2
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 5.8e-49 201.1 1274 26.7
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 9.9e-49 200.3 1250 25.9
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 9.9e-49 200.3 1461 24.6
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 4.9e-48 198.0 1311 25.2
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 6.4e-48 197.6 1375 25.9
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 1.1e-47 196.8 1289 26.1
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 4.1e-47 194.9 1305 26.1
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 4.1e-47 194.9 1398 24.8
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 5.4e-47 194.5 1273 26.6
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 1.2e-46 193.4 1300 25.9
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 7.8e-46 190.7 1612 23.9
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.0e-45 190.3 1057 26.0
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 1.0e-45 190.3 1323 25.5
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 1.7e-45 189.5 1301 27.0
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 5.1e-45 188.0 1387 24.3
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 6.6e-45 187.6 1409 24.3
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 1.5e-44 186.4 1340 24.6
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 1.5e-44 186.4 1492 24.5
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 2.5e-44 185.7 1292 23.8
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 4.3e-44 184.9 1372 24.6
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 5.6e-44 184.5 1290 23.9
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 7.3e-44 184.1 1273 25.5
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 7.3e-44 184.1 1299 25.3
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 9.6e-44 183.7 1305 24.9
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 1.6e-43 183.0 1232 26.1
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 2.1e-43 182.6 1291 25.1
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 2.1e-43 182.6 1237 24.3
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 2.1e-43 182.6 1250 25.3
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 2.8e-43 182.2 1250 24.7
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 3.6e-43 181.8 1426 24.7
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.4e-42 179.9 1574 22.6
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 2.4e-42 179.1 1427 25.6
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 6.9e-42 177.6 1257 25.1
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 1.2e-41 176.8 1301 25.1
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 1.5e-41 176.4 1182 25.7
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 2.0e-41 176.0 1273 25.5
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 2.0e-41 176.0 1436 24.7
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 3.4e-41 175.3 1343 25.2
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 1.3e-40 173.3 1244 25.6
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 2.9e-40 172.2 1300 24.2
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 4.9e-40 171.4 1268 25.1
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 6.4e-40 171.0 1448 25.3
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 1.4e-39 169.9 1302 25.7
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 1.9e-39 169.5 1280 25.3
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 4.2e-39 168.3 1405 25.3
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 4.2e-39 168.3 1437 23.7
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 5.4e-39 167.9 1201 26.1
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 2.1e-38 166.0 1164 26.5
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 4.6e-38 164.9 1247 23.9
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 1.0e-37 163.7 1161 26.2
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 1.3e-37 163.3 1612 22.5
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 6.6e-37 161.0 1288 23.8
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 1.5e-36 159.8 1304 24.3
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.5e-36 159.8 983 25.6
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.5e-36 159.8 213 49.3
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 7.3e-36 157.5 1270 23.2
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 9.6e-36 157.1 1459 23.4
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 9.6e-36 157.1 1178 24.0
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 2.8e-35 155.6 1541 24.3
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 2.8e-35 155.6 1007 24.9
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 8.1e-35 154.1 1575 23.1
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 2.4e-34 152.5 1339 25.0
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 1.2e-33 150.2 1426 24.4
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 2.6e-33 149.1 395 34.4
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 5.8e-33 147.9 1395 23.7
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 1.3e-32 146.7 1569 23.2
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 1.7e-32 146.4 1260 24.4
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 1.7e-32 146.4 1229 22.9
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 3.8e-32 145.2 622 29.4
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 7.4e-28 131.0 513 28.5
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.6e-27 129.8 325 37.2
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 3.6e-27 128.6 1492 23.6
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 6.2e-27 127.9 204 43.1
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 8.1e-27 127.5 846 25.4
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 2.0e-25 122.9 435 32.2
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 2.9e-24 119.0 1348 23.5
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 5.5e-23 114.8 1116 22.2
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 5.5e-23 114.8 1164 22.6
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 2.7e-22 112.5 417 30.2
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 1.3e-21 110.2 1103 22.8
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 1.8e-21 109.8 203 42.9
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 1.8e-21 109.8 1024 24.3
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 2.5e-20 105.9 201 41.3
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 9.6e-20 104.0 1262 22.3
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 2.8e-19 102.4 197 41.6
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.0e-16 94.0 82 58.5
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 4.2e-15 88.6 974 21.1
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.3e-13 83.6 71 63.4
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.3e-13 83.6 71 63.4
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 5.1e-13 81.6 114 51.8
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 9.6e-12 77.4 71 56.3
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 1.3e-11 77.0 73 56.2
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 1.3e-11 77.0 60 61.7
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 4.8e-11 75.1 256 31.6
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 6.3e-11 74.7 55 69.1
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 5.3e-10 71.6 1213 24.0
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 9.0e-10 70.9 372 26.3
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 7.6e-09 67.8 287 25.4
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 1.6e-06 60.1 832 22.1


User provided reference genes

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