Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 0.0e+00 1528.5 790 100.0
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 5.2e-71 273.5 813 30.8
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 3.8e-66 257.3 825 29.9
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 7.2e-65 253.1 845 28.0
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 9.5e-65 252.7 825 30.7
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 4.7e-64 250.4 814 29.4
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.4e-63 248.8 822 29.9
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 4.0e-63 247.3 819 29.7
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 5.7e-62 243.4 822 29.1
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 7.5e-62 243.0 836 27.9
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 1.3e-61 242.3 807 28.5
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 3.5e-59 234.2 813 29.6
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 3.5e-59 234.2 823 28.9
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 1.7e-58 231.9 840 27.6
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 2.9e-58 231.1 822 27.5
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 2.5e-57 228.0 815 28.3
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.2e-56 225.7 836 28.2
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 2.1e-56 224.9 824 30.2
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 2.1e-56 224.9 823 27.9
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.8e-55 221.9 809 27.8
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 2.3e-55 221.5 841 27.6
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 6.8e-55 219.9 849 28.2
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 1.5e-54 218.8 820 29.0
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 2.0e-54 218.4 843 26.5
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 3.4e-54 217.6 839 26.8
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 7.5e-54 216.5 808 27.0
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.3e-53 215.7 827 27.2
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 1.4e-52 212.2 850 28.1
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 1.8e-52 211.8 791 27.6
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 2.4e-52 211.5 802 26.4
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 3.2e-52 211.1 837 28.3
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 5.4e-52 210.3 868 27.0
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.0e-51 208.4 847 26.4
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 3.5e-51 207.6 808 26.7
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 5.9e-51 206.8 379 38.3
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 5.9e-51 206.8 808 26.6
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 1.3e-50 205.7 864 26.7
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 2.3e-50 204.9 845 26.9
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 3.0e-50 204.5 840 26.2
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 6.6e-50 203.4 835 27.1
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.1e-49 202.6 709 28.9
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 1.1e-49 202.6 806 26.8
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.5e-49 202.2 838 27.2
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 1.9e-49 201.8 825 25.2
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 5.6e-49 200.3 853 26.6
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 2.8e-48 198.0 835 25.4
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 3.6e-48 197.6 844 27.0
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 4.7e-48 197.2 847 26.7
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 8.0e-48 196.4 824 27.5
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.4e-47 195.7 869 26.2
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.4e-47 195.7 875 25.7
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 1.8e-47 195.3 885 25.4
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 2.3e-47 194.9 819 27.0
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 6.8e-47 193.4 891 25.4
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 8.9e-47 193.0 838 26.5
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 2.6e-46 191.4 875 25.7
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 3.4e-46 191.0 843 26.3
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 4.4e-46 190.7 396 33.3
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 5.8e-46 190.3 485 32.6
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 2.2e-45 188.3 391 34.5
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 2.2e-45 188.3 385 36.1
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 2.9e-45 188.0 396 34.8
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 3.7e-45 187.6 400 34.5
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 6.4e-45 186.8 868 25.2
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 6.4e-45 186.8 403 35.5
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 1.1e-44 186.0 826 24.9
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 1.4e-44 185.7 396 33.8
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 1.4e-44 185.7 824 25.0
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 1.4e-44 185.7 865 26.1
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 2.4e-44 184.9 836 25.1
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 2.4e-44 184.9 858 25.5
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 3.2e-44 184.5 403 32.8
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 3.2e-44 184.5 839 25.1
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 4.1e-44 184.1 398 34.2
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.1e-44 184.1 828 26.6
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 7.0e-44 183.3 870 26.8
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 2.7e-43 181.4 421 35.6
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 4.6e-43 180.6 828 25.1
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 1.0e-42 179.5 891 24.4
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 2.3e-42 178.3 861 25.2
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 3.9e-42 177.6 818 26.4
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 1.9e-41 175.3 406 32.5
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 1.9e-41 175.3 413 35.6
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 4.3e-41 174.1 794 26.2
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 7.3e-41 173.3 840 25.2
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 9.5e-41 172.9 398 31.7
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.6e-40 171.0 815 25.4
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 3.6e-40 171.0 871 25.5
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.6e-40 171.0 869 25.1
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 4.7e-40 170.6 851 25.7
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 6.2e-40 170.2 826 24.5
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 6.2e-40 170.2 816 26.1
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.1e-39 169.5 842 26.8
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 5.2e-39 167.2 829 24.7
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 6.8e-39 166.8 827 24.5
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 3.4e-38 164.5 386 33.4
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 3.4e-38 164.5 837 25.3
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 6.4e-37 160.2 734 25.3
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.1e-35 155.2 816 23.9
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 1.3e-34 152.5 744 26.2
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 5.1e-34 150.6 892 23.5
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 1.5e-33 149.1 502 29.5
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 5.6e-33 147.1 778 25.8
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.8e-31 142.1 859 25.1
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 5.2e-31 140.6 323 32.8
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 8.9e-31 139.8 813 22.1
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.2e-30 139.4 746 26.1
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 5.8e-30 137.1 759 25.4
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 7.6e-30 136.7 430 29.5
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 9.9e-30 136.3 780 24.5
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 1.3e-29 136.0 833 23.8
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 1.1e-28 132.9 287 33.8
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.9e-28 132.1 943 22.1
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 5.4e-28 130.6 314 34.4
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 7.1e-28 130.2 717 25.0
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 1.6e-27 129.0 286 35.7
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 1.0e-26 126.3 197 39.6
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 5.1e-26 124.0 271 33.9
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 8.1e-24 116.7 854 22.4
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.2e-22 112.8 368 28.3
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 4.4e-22 110.9 881 21.5
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 2.9e-21 108.2 242 33.1
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 8.4e-21 106.7 81 61.7
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.1e-20 106.3 864 21.6
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 5.4e-20 104.0 358 27.7
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.1e-19 102.1 349 28.1
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 6.0e-19 100.5 177 36.2
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.3e-18 98.6 136 43.4
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 3.9e-18 97.8 744 23.7
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 5.1e-18 97.4 400 26.0
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 8.7e-18 96.7 85 51.8
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.1e-17 96.3 95 50.5
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.9e-17 95.5 280 28.6
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.3e-17 94.7 101 48.5
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 9.6e-17 93.2 89 50.6
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 2.1e-16 92.0 89 49.4
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 8.1e-16 90.1 99 42.4
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 1.1e-15 89.7 279 29.7
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.1e-15 89.7 101 45.5
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.4e-15 88.6 101 44.6
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 3.1e-15 88.2 88 47.7
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 5.3e-15 87.4 87 48.3
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 9.9e-14 83.2 150 37.3
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 9.9e-14 83.2 105 41.0
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 2.9e-13 81.6 155 36.8
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 2.9e-13 81.6 155 36.8
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 2.9e-13 81.6 98 39.8
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 3.8e-13 81.3 754 23.6
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 1.4e-12 79.3 158 35.4
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 2.4e-12 78.6 158 34.2
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 2.4e-12 78.6 83 45.8
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 4.2e-12 77.8 136 34.6
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 2.1e-11 75.5 72 48.6
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.8e-10 72.4 85 42.4
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 1.1e-09 69.7 173 35.8
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 1.3e-08 66.2 81 39.5
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 2.8e-08 65.1 101 33.7
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 6.2e-08 63.9 80 38.8
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.1e-07 61.6 61 47.5
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 9.9e-06 56.6 57 42.1


User provided reference genes

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