Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 8.7e-111 403.7 208 100.0
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 9.7e-110 400.2 208 99.0
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 84.6
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 1.7e-98 362.8 208 86.1
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 2.9e-98 362.1 208 86.1
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 5.0e-98 361.3 208 85.6
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 5.0e-98 361.3 208 85.6
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 6.5e-98 360.9 208 85.6
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 6.5e-98 360.9 208 85.6
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 8.5e-98 360.5 208 85.1
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 8.5e-98 360.5 208 86.1
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 8.5e-98 360.5 208 85.1
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 1.4e-97 359.8 206 85.4
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 2.5e-97 359.0 208 84.6
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 3.2e-97 358.6 207 84.5
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 3.2e-97 358.6 208 84.1
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 4.2e-97 358.2 208 84.6
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 4.2e-97 358.2 206 85.4
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 5.5e-97 357.8 208 84.6
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 5.5e-97 357.8 208 84.1
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 7.2e-97 357.5 208 84.6
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 9.4e-97 357.1 206 85.0
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 9.4e-97 357.1 206 85.0
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 1.2e-96 356.7 208 85.1
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 2.7e-96 355.5 206 85.0
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 2.7e-96 355.5 206 85.0
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 2.7e-96 355.5 208 84.6
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 2.7e-96 355.5 208 84.6
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.7e-96 355.5 208 84.1
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 2.7e-96 355.5 208 83.2
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 3.6e-96 355.1 206 85.0
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.6e-96 355.1 208 83.7
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 4.7e-96 354.8 208 84.1
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 4.7e-96 354.8 208 83.7
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 4.7e-96 354.8 208 83.2
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 4.7e-96 354.8 208 84.1
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 4.7e-96 354.8 208 84.1
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 6.1e-96 354.4 208 83.2
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 6.1e-96 354.4 208 84.6
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 6.1e-96 354.4 213 83.6
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 7.9e-96 354.0 206 84.5
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 1.0e-95 353.6 207 83.6
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 1.0e-95 353.6 210 84.8
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 1.0e-95 353.6 207 83.6
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 1.8e-95 352.8 208 84.1
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 2.3e-95 352.4 207 83.1
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 2.3e-95 352.4 208 82.7
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 3.0e-95 352.1 208 82.7
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 3.0e-95 352.1 208 83.2
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 3.0e-95 352.1 208 85.1
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 3.9e-95 351.7 208 83.2
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 5.1e-95 351.3 208 83.7
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 5.1e-95 351.3 206 84.5
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 6.7e-95 350.9 208 83.7
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 6.7e-95 350.9 208 83.7
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 8.8e-95 350.5 208 82.7
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 8.8e-95 350.5 206 83.0
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 1.1e-94 350.1 209 82.8
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 1.5e-94 349.7 207 82.6
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.5e-94 349.7 206 83.0
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 1.5e-94 349.7 209 82.8
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 1.5e-94 349.7 209 82.8
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.0e-94 349.4 208 82.7
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 2.0e-94 349.4 209 82.8
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 3.3e-94 348.6 208 82.2
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 4.4e-94 348.2 208 83.2
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 5.7e-94 347.8 208 81.2
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 9.7e-94 347.1 208 81.2
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 9.7e-94 347.1 206 82.0
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 1.7e-93 346.3 208 83.2
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 1.7e-93 346.3 208 83.2
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 2.8e-93 345.5 208 83.2
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 2.8e-93 345.5 208 82.7
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 4.8e-93 344.7 208 82.2
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 4.8e-93 344.7 208 82.2
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 4.8e-93 344.7 207 81.2
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 4.8e-93 344.7 218 78.9
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 6.3e-93 344.4 208 82.7
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 6.3e-93 344.4 208 81.2
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 1.1e-92 343.6 208 81.7
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 1.1e-92 343.6 208 82.7
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 1.1e-92 343.6 208 82.7
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 1.1e-92 343.6 203 82.8
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 1.4e-92 343.2 208 82.2
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 1.8e-92 342.8 207 81.2
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 4.1e-92 341.7 205 82.0
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 5.3e-92 341.3 206 81.1
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 7.0e-92 340.9 207 82.6
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 2.0e-91 339.3 205 81.5
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 2.0e-91 339.3 208 82.2
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 3.4e-91 338.6 208 82.2
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 2.2e-90 335.9 208 80.8
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 3.8e-90 335.1 207 81.6
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 5.0e-90 334.7 208 80.3
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 3.2e-89 332.0 208 80.3
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 9.4e-89 330.5 196 82.7
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 9.4e-89 330.5 208 79.3
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.0e-87 327.0 207 78.7
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.0e-87 327.0 207 78.7
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 1.0e-87 327.0 190 86.3
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.8e-87 326.2 207 78.7
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 5.7e-86 321.2 208 74.5
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 7.4e-86 320.9 208 78.4
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.7e-85 319.7 207 76.8
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.2e-83 313.5 178 86.5
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.2e-83 313.5 208 76.9
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 3.8e-82 308.5 179 84.4
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 6.5e-82 307.8 178 84.3
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 2.7e-80 302.4 206 75.2
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 4.7e-80 301.6 178 83.1
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 1.8e-79 299.7 177 83.1
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 1.2e-78 297.0 179 79.9
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 1.2e-78 297.0 205 75.6
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 2.8e-77 292.4 210 73.8
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 4.8e-77 291.6 208 74.0
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 2.5e-73 279.3 167 80.8
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 4.0e-71 271.9 156 84.6
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 5.2e-71 271.6 156 83.3
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 2.0e-70 269.6 207 69.1
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 9.1e-68 260.8 203 63.5
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 3.5e-67 258.8 202 62.9
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 2.3e-66 256.1 200 60.5
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 1.2e-64 250.4 198 63.6
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.4e-63 246.9 211 63.5
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 8.3e-61 237.7 206 60.7
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 1.3e-58 230.3 199 56.8
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 1.5e-57 226.9 162 72.2
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 5.8e-54 214.9 120 85.8
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 6.4e-53 211.5 207 54.6
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 8.3e-53 211.1 207 51.2
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 2.7e-51 206.1 133 80.5
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 8.6e-50 201.1 197 49.7
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 4.3e-49 198.7 196 48.0
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 1.8e-47 193.4 167 62.9
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 6.8e-47 191.4 151 65.6
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 1.1e-44 184.1 209 52.2
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 7.8e-43 177.9 231 43.3
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 5.8e-38 161.8 98 80.6
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 9.9e-38 161.0 161 59.6
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 2.5e-33 146.4 208 43.8
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 4.0e-31 139.0 187 40.1
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 1.2e-30 137.5 206 43.7
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 6.0e-27 125.2 96 69.8
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 7.8e-27 124.8 97 68.0
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.0e-26 124.4 74 81.1
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.3e-25 119.0 83 71.1
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 1.1e-23 114.4 92 63.0
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 7.6e-22 108.2 135 48.1
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 2.9e-21 106.3 60 78.3
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 4.9e-21 105.5 73 75.3
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 2.4e-20 103.2 60 81.7
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 3.5e-19 99.4 82 59.8
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 2.7e-11 73.2 61 55.7
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 9.6e-09 64.7 75 56.0
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 1.5e-06 57.4 39 61.5
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 2.6e-06 56.6 38 68.4
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 9.9e-06 54.7 47 63.8


User provided reference genes

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