Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024272 Vanilla planifolia HOM05D006995 ORTHO05D008870 2.1e-43 178.7 97 100.0
Os02g0593400 Oryza sativa ssp. japonica HOM05D006995 ORTHO05D008870 6.0e-30 134.0 97 73.2
Zm00001eb183600 Zea mays HOM05D006995 ORTHO05D008870 6.7e-29 130.6 97 72.2
Zm00001eb245930 Zea mays HOM05D006995 ORTHO05D008870 7.4e-28 127.1 97 70.1
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 1.9e-20 102.4 100 65.0
ATR0824G277 Amborella trichopoda HOM05D006995 ORTHO05D008870 1.6e-19 99.4 99 59.6
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 2.1e-19 99.0 100 61.0
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 6.2e-19 97.4 100 62.0
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 1.1e-18 96.7 100 61.0
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 1.1e-18 96.7 100 62.0
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 5.3e-18 94.4 100 60.0
ATR0743G118 Amborella trichopoda HOM05D006995 ORTHO05D008870 3.4e-17 91.7 99 56.6
Nn4g22611 Nelumbo nucifera HOM05D006995 ORTHO05D008870 1.3e-16 89.7 100 58.0
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 2.2e-16 89.0 100 60.0
Aqoxy5G03762 Aquilegia oxysepala HOM05D006995 ORTHO05D008870 4.9e-16 87.8 99 57.6
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 4.9e-16 87.8 100 58.0
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 1.1e-15 86.7 100 56.0
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 4.2e-15 84.7 100 57.0
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 4.2e-15 84.7 98 55.1
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 4.2e-15 84.7 100 57.0
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 4.2e-15 84.7 100 57.0
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 2.1e-14 82.4 100 55.0
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 3.5e-14 81.6 100 55.0
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 6.0e-14 80.9 100 56.0
CiPaw.12G030600 Carya illinoinensis HOM05D006995 ORTHO05D008870 6.0e-14 80.9 99 53.5
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 7.9e-14 80.5 100 56.0
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 1.0e-13 80.1 100 55.0
EL10Ac5g10662 Beta vulgaris HOM05D006995 ORTHO05D008870 1.8e-13 79.3 101 59.4
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 1.8e-13 79.3 100 52.0
Hund02782 Selenicereus undatus HOM05D006995 ORTHO05D008870 2.3e-13 79.0 101 58.4
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 3.0e-13 78.6 100 55.0
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 5.1e-13 77.8 101 52.5
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 8.7e-13 77.0 100 52.0
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 1.1e-12 76.6 100 55.0
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 1.5e-12 76.3 102 51.0
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 1.5e-12 76.3 100 51.0
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 1.9e-12 75.9 100 53.0
Sc04g0001540 Simmondsia chinensis HOM05D006995 ORTHO05D008870 1.9e-12 75.9 100 51.0
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 3.3e-12 75.1 96 52.1
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 5.7e-12 74.3 100 52.0
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 7.4e-12 73.9 102 50.0
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 7.4e-12 73.9 102 50.0
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 7.4e-12 73.9 100 51.0
Thhalv10023776m.g Eutrema salsugineum HOM05D006995 ORTHO05D008870 7.4e-12 73.9 100 52.0
Gohir.D12G202400 Gossypium hirsutum HOM05D006995 ORTHO05D008870 1.3e-11 73.2 98 53.1
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 1.3e-11 73.2 100 53.0
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 2.2e-11 72.4 100 49.0
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 2.8e-11 72.0 98 51.0
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 3.7e-11 71.6 96 51.0
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 6.3e-11 70.9 100 48.0
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 6.3e-11 70.9 99 53.5
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 6.3e-11 70.9 99 53.5
HanXRQChr04g0101331 Helianthus annuus HOM05D006995 ORTHO05D008870 6.3e-11 70.9 100 52.0
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 8.2e-11 70.5 100 50.0
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 8.2e-11 70.5 100 50.0
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 8.2e-11 70.5 100 48.0
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 8.2e-11 70.5 100 51.0
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 1.1e-10 70.1 100 51.0
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 1.1e-10 70.1 100 50.0
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 1.8e-10 69.3 102 52.0
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 1.8e-10 69.3 100 47.0
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 2.4e-10 68.9 100 51.0
Ca_22795_v3 Cicer arietinum L. HOM05D001863 ORTHO05D001962 3.1e-10 68.6 82 52.4
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 3.1e-10 68.6 100 50.0
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 3.1e-10 68.6 100 50.0
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 4.1e-10 68.2 102 48.0
BcaC04g23358 Brassica carinata HOM05D006995 ORTHO05D008870 5.3e-10 67.8 93 50.5
C09p09200 Brassica napus HOM05D006995 ORTHO05D008870 5.3e-10 67.8 93 50.5
BolC9t53833H Brassica oleracea HOM05D006995 ORTHO05D008870 5.3e-10 67.8 93 50.5
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 5.3e-10 67.8 100 51.0
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 6.9e-10 67.4 100 50.0
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 6.9e-10 67.4 99 51.5
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 6.9e-10 67.4 100 49.0
Thecc.03G024900 Theobroma cacao HOM05D006995 ORTHO05D008870 9.0e-10 67.0 72 58.3
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 1.2e-09 66.6 99 51.5
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 1.2e-09 66.6 99 51.5
Atru.chr9.2568 Acer truncatum HOM05D006995 ORTHO05D008870 1.5e-09 66.2 68 60.3
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 2.0e-09 65.9 98 46.9
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 2.0e-09 65.9 100 50.0
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 3.4e-09 65.1 99 50.5
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 4.5e-09 64.7 100 50.0
BcaC01g02557 Brassica carinata HOM05D006995 ORTHO05D008870 5.9e-09 64.3 102 46.1
C03p63500 Brassica napus HOM05D006995 ORTHO05D008870 5.9e-09 64.3 102 46.1
Duzib205G0595 Durio zibethinus HOM05D006995 ORTHO05D008870 5.9e-09 64.3 100 51.0
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 1.3e-08 63.2 100 49.0
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 1.3e-08 63.2 100 48.0
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 1.7e-08 62.8 100 48.0
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 1.7e-08 62.8 100 48.0
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 2.9e-08 62.0 100 48.0
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 3.8e-08 61.6 100 47.0
Nn3g16705 Nelumbo nucifera HOM05D006995 ORTHO05D008870 2.5e-07 58.9 61 59.0
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 3.2e-07 58.5 98 48.0
GSVIVG01007657001 Vitis vinifera HOM05D006995 ORTHO05D008870 7.2e-07 57.4 61 59.0
SHI24880 Sapria himalayana HOM05D006995 ORTHO05D008870 2.1e-06 55.8 81 50.6
Ah.11g042030 Amaranthus hybridus HOM05D006995 ORTHO05D008870 3.6e-06 55.1 91 48.4


User provided reference genes

Program Settings