Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 4.3e-113 411.4 216 100.0
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 3.5e-78 295.4 231 73.6
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 7.1e-47 191.4 232 51.7
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 8.1e-27 124.8 232 41.4
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 1.4e-26 124.0 232 40.5
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 3.1e-26 122.9 228 40.8
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 6.9e-26 121.7 222 38.7
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 3.4e-25 119.4 233 39.5
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.7e-24 117.1 199 41.2
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 2.9e-24 116.3 233 39.5
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 8.4e-24 114.8 233 38.6
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 8.4e-24 114.8 235 39.6
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.4e-24 114.8 199 40.7
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 8.4e-24 114.8 199 40.7
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 1.4e-23 114.0 233 38.2
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.4e-23 113.2 219 38.8
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 7.1e-23 111.7 223 38.1
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 9.3e-23 111.3 233 38.2
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 1.2e-22 110.9 222 38.7
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 1.6e-22 110.5 233 37.3
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 2.1e-22 110.2 222 37.8
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 6.0e-22 108.6 222 37.4
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 2.3e-21 106.7 222 38.3
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 3.9e-21 105.9 236 36.9
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.1e-21 105.5 236 36.9
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 6.7e-21 105.1 233 36.5
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 6.7e-21 105.1 233 36.5
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 8.7e-21 104.8 241 36.5
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.1e-20 104.4 204 38.2
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 1.5e-20 104.0 233 35.2
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.9e-20 103.6 191 37.7
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 3.3e-20 102.8 187 37.4
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.3e-20 102.4 235 38.3
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 4.3e-20 102.4 235 35.7
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 5.6e-20 102.1 194 38.1
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 7.4e-20 101.7 190 37.9
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 9.6e-20 101.3 204 37.7
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 1.3e-19 100.9 228 36.0
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 1.6e-19 100.5 226 36.7
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.6e-19 100.5 231 35.5
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 2.1e-19 100.1 200 39.0
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.2e-19 98.6 232 34.9
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.1e-19 98.2 232 34.1
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 1.1e-18 97.8 220 34.5
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.4e-18 97.4 230 37.8
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 1.8e-18 97.1 191 38.2
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 2.4e-18 96.7 191 38.2
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 2.4e-18 96.7 201 38.8
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.1e-18 96.3 230 37.4
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 4.0e-18 95.9 225 36.0
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 5.3e-18 95.5 225 37.3
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 5.3e-18 95.5 223 36.3
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 5.3e-18 95.5 223 36.3
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 6.9e-18 95.1 229 35.4
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 6.9e-18 95.1 189 37.0
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 6.9e-18 95.1 226 35.4
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 6.9e-18 95.1 204 35.3
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 1.2e-17 94.4 224 35.7
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.2e-17 94.4 233 35.2
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.5e-17 94.0 215 34.9
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 2.0e-17 93.6 220 33.6
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 3.4e-17 92.8 231 35.9
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 4.5e-17 92.4 221 35.3
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 1.3e-16 90.9 246 33.3
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 1.3e-16 90.9 238 34.9
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 1.3e-16 90.9 190 34.7
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 1.7e-16 90.5 224 34.8
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 1.7e-16 90.5 248 33.9
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 1.7e-16 90.5 210 31.4
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 3.8e-16 89.4 206 35.4
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 6.5e-16 88.6 199 35.7
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 1.1e-15 87.8 253 32.8
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.4e-15 87.4 223 33.2
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 1.4e-15 87.4 225 32.0
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 1.4e-15 87.4 210 35.7
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.9e-15 87.0 223 32.7
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 2.5e-15 86.7 220 34.5
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 2.5e-15 86.7 227 32.2
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 3.2e-15 86.3 199 35.2
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 4.2e-15 85.9 227 33.0
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 9.3e-15 84.7 222 33.8
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.6e-14 84.0 174 40.2
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 2.1e-14 83.6 235 32.8
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 2.1e-14 83.6 233 30.9
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 2.7e-14 83.2 193 37.3
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 2.7e-14 83.2 227 32.2
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 3.5e-14 82.8 224 32.6
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 6.0e-14 82.0 229 35.4
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 6.0e-14 82.0 229 33.2
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 6.0e-14 82.0 230 32.2
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 7.9e-14 81.6 214 35.5
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.0e-13 81.3 190 35.3
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 1.3e-13 80.9 176 37.5
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 3.0e-13 79.7 209 33.0
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 3.0e-13 79.7 190 34.2
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.9e-13 79.3 180 35.6
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 5.1e-13 79.0 224 33.9
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 8.7e-13 78.2 225 33.3
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 1.9e-12 77.0 223 30.9
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 2.5e-12 76.6 240 33.3
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 3.3e-12 76.3 177 34.5
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 3.3e-12 76.3 186 36.0
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 4.3e-12 75.9 82 59.8
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 7.4e-12 75.1 263 29.7
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 7.4e-12 75.1 63 58.7
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 9.6e-12 74.7 82 56.1
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 4.8e-11 72.4 303 27.4
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 4.8e-11 72.4 230 33.5
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 8.2e-11 71.6 225 35.1
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.4e-10 70.9 247 33.2
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 1.4e-10 70.9 153 33.3
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 1.4e-10 70.9 180 31.1
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.8e-10 70.5 153 32.7
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 4.1e-10 69.3 227 33.5
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 5.3e-10 68.9 57 63.2
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 6.9e-10 68.6 75 49.3
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.5e-09 67.4 168 31.5
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 2.6e-09 66.6 205 31.7
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 3.4e-09 66.2 192 30.7
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 7.6e-09 65.1 82 51.2
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 1.0e-08 64.7 47 70.2
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.3e-08 64.3 79 46.8
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 1.3e-08 64.3 203 30.5
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 2.2e-08 63.5 200 31.0
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 2.2e-08 63.5 206 30.6
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 2.9e-08 63.2 230 28.7
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 3.8e-08 62.8 201 30.3
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 3.8e-08 62.8 279 25.1
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 6.5e-08 62.0 36 72.2
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.1e-07 61.2 40 65.0
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 1.1e-07 61.2 223 30.5
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 1.4e-07 60.8 232 29.3
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 1.9e-07 60.5 41 65.9
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 1.9e-07 60.5 205 30.2
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 3.2e-07 59.7 208 30.8
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 3.2e-07 59.7 233 31.3
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 4.2e-07 59.3 172 33.7
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 5.5e-07 58.9 36 69.4
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 7.2e-07 58.5 40 62.5
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 1.2e-06 57.8 40 65.0
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 1.2e-06 57.8 40 65.0
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 1.2e-06 57.8 38 68.4
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 1.6e-06 57.4 231 31.6
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 2.1e-06 57.0 201 30.8
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 2.1e-06 57.0 98 36.7
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 2.7e-06 56.6 40 62.5
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 2.7e-06 56.6 207 30.0
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 3.6e-06 56.2 37 59.5
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 3.6e-06 56.2 204 30.4
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 6.1e-06 55.5 40 60.0
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 6.1e-06 55.5 40 60.0


User provided reference genes

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