Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024091 Vanilla planifolia HOM05D006392 ORTHO05D008010 1.6e-205 719.2 350 100.0
TAR628G0005 Trochodendron aralioides HOM05D006392 ORTHO05D008010 1.0e-132 477.2 381 60.9
ATR0810G120 Amborella trichopoda HOM05D006392 ORTHO05D008010 2.8e-130 469.2 378 61.9
Aqoxy6G00284_Aqoxy6G00285 Aquilegia oxysepala HOM05D006392 ORTHO05D008010 9.5e-126 454.1 381 61.2
PSO541G2958 Papaver somniferum HOM05D006392 ORTHO05D008010 9.5e-126 454.1 378 60.6
PSO675G2043 Papaver somniferum HOM05D006392 ORTHO05D008010 9.5e-126 454.1 378 60.6
Nitab4.5_0013390g0010 Nicotiana tabacum HOM05D006392 ORTHO05D008010 9.8e-123 444.1 343 60.3
GSVIVG01009916001 Vitis vinifera HOM05D006392 ORTHO05D008010 2.2e-122 443.0 372 58.3
Os06g0715600 Oryza sativa ssp. japonica HOM05D006392 ORTHO05D008010 4.9e-122 441.8 377 57.0
Hma1.2p1_0638F.1_g193900 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 3.2e-121 439.1 370 58.6
Rhsim06G0021200 Rhododendron simsii HOM05D006392 ORTHO05D008010 4.1e-121 438.7 376 57.7
Hund05186 Selenicereus undatus HOM05D006392 ORTHO05D008010 1.2e-120 437.2 348 61.2
AUR62041903 Chenopodium quinoa HOM05D006392 ORTHO05D008010 1.0e-119 434.1 344 59.3
MSTRG.1188 Avicennia marina HOM05D006392 ORTHO05D008010 3.9e-119 432.2 370 56.8
ECA233G3412 Erigeron canadensis HOM05D006392 ORTHO05D008010 3.9e-119 432.2 381 55.6
CSS0006206 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 5.0e-119 431.8 376 55.6
CSS0012189 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 5.0e-119 431.8 376 55.6
CAN.G311.35 Capsicum annuum HOM05D006392 ORTHO05D008010 5.6e-118 428.3 376 54.5
Oeu014179.1 Olea europaea HOM05D006392 ORTHO05D008010 4.7e-117 425.2 374 55.9
Actinidia21265 Actinidia chinensis HOM05D006392 ORTHO05D008010 3.1e-116 422.5 376 55.6
Zm00001eb228060 Zea mays HOM05D006392 ORTHO05D008010 3.1e-116 422.5 383 55.1
HanXRQChr13g0387101 Helianthus annuus HOM05D006392 ORTHO05D008010 6.8e-116 421.4 383 54.6
Cfa013957 Carpinus fangiana HOM05D006392 ORTHO05D008010 1.5e-115 420.2 369 57.5
CDE04G0374 Ceratophyllum demersum HOM05D006392 ORTHO05D008010 1.5e-115 420.2 344 60.5
Lj4C23T1 Lonicera japonica HOM05D006392 ORTHO05D008010 2.0e-115 419.9 400 51.8
SEGI_16132 Sequoiadendron giganteum HOM05D006392 ORTHO05D008010 2.0e-115 419.9 373 55.0
TWI56G0581 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 9.8e-115 417.5 376 55.1
Duzib093G0848 Durio zibethinus HOM05D006392 ORTHO05D008010 2.2e-114 416.4 376 56.1
Sed0018359 Sechium edule HOM05D006392 ORTHO05D008010 2.2e-114 416.4 379 55.1
AUR62033899 Chenopodium quinoa HOM05D006392 ORTHO05D008010 2.9e-114 416.0 377 53.8
Eucgr.F01664 Eucalyptus grandis HOM05D006392 ORTHO05D008010 2.9e-114 416.0 383 56.4
Sopen04g035110 Solanum pennellii HOM05D006392 ORTHO05D008010 2.9e-114 416.0 376 53.2
Solyc04g081500.3 Solanum lycopersicum HOM05D006392 ORTHO05D008010 4.9e-114 415.2 376 53.2
PGSC0003DMG400009939 Solanum tuberosum HOM05D006392 ORTHO05D008010 1.1e-113 414.1 376 53.7
Cpa.g.sc26.51 Carica papaya HOM05D006392 ORTHO05D008010 1.4e-113 413.7 375 56.0
Thecc.08G045200 Theobroma cacao HOM05D006392 ORTHO05D008010 4.1e-113 412.1 377 56.0
CsaV3_3G045910 Cucumis sativus L. HOM05D006392 ORTHO05D008010 7.0e-113 411.4 378 54.5
Migut.C00843 Erythranthe guttata HOM05D006392 ORTHO05D008010 2.1e-112 409.8 370 54.6
Ciclev10001496m.g Citrus clementina HOM05D006392 ORTHO05D008010 4.6e-112 408.7 375 56.3
SalBow7G2189 Salvia bowleyana HOM05D006392 ORTHO05D008010 4.6e-112 408.7 380 52.9
Duzib116G0836 Durio zibethinus HOM05D006392 ORTHO05D008010 2.3e-111 406.4 345 58.8
QL02p011683 Quercus lobata HOM05D006392 ORTHO05D008010 3.0e-111 406.0 383 53.5
MD08G1012700 Malus domestica HOM05D006392 ORTHO05D008010 5.0e-111 405.2 371 52.8
Gohir.D01G097700 Gossypium hirsutum HOM05D006392 ORTHO05D008010 1.9e-110 403.3 377 54.1
Lsat_1_v5_gn_8_30701 Lactuca sativa HOM05D006392 ORTHO05D008010 2.5e-110 402.9 383 53.5
Gohir.A01G111000 Gossypium hirsutum HOM05D006392 ORTHO05D008010 3.3e-110 402.5 377 54.1
MD15G1011700 Malus domestica HOM05D006392 ORTHO05D008010 7.3e-110 401.4 371 52.8
Gorai.002G123300 Gossypium raimondii HOM05D006392 ORTHO05D008010 9.5e-110 401.0 377 53.8
Lj6g0002207 Lotus japonicus HOM05D006392 ORTHO05D008010 1.2e-109 400.6 371 55.5
CiPaw.07G149200 Carya illinoinensis HOM05D006392 ORTHO05D008010 2.8e-109 399.4 382 52.9
Prupe.1G364700 Prunus persica HOM05D006392 ORTHO05D008010 3.6e-109 399.1 370 53.5
CANSAT25G2040 Cannabis sativa HOM05D006392 ORTHO05D008010 6.2e-109 398.3 369 54.7
Potri.005G240000 Populus trichocarpa HOM05D006392 ORTHO05D008010 8.1e-109 397.9 378 53.4
Lalb_Chr20g0119891 Lupinus albus HOM05D006392 ORTHO05D008010 2.3e-108 396.4 378 53.4
PGR083G2660 Punica granatum HOM05D006392 ORTHO05D008010 8.9e-108 394.4 377 54.1
Haze_22639 Corylus avellana HOM05D006392 ORTHO05D008010 1.2e-107 394.0 430 49.1
EL10Ac1g02188 Beta vulgaris HOM05D006392 ORTHO05D008010 1.5e-107 393.7 356 53.9
Potri.002G021700 Populus trichocarpa HOM05D006392 ORTHO05D008010 2.0e-107 393.3 375 52.5
Medtr2g029040 Medicago truncatula HOM05D006392 ORTHO05D008010 5.8e-107 391.7 377 52.0
Nn1g05904 Nelumbo nucifera HOM05D006392 ORTHO05D008010 7.5e-107 391.3 375 54.7
DCAR_023015 Daucus carota HOM05D006392 ORTHO05D008010 2.2e-106 389.8 381 51.2
Glyma.09G103100 Glycine max HOM05D006392 ORTHO05D008010 4.9e-106 388.7 378 53.2
Sabra05G0185500 Salix brachista HOM05D006392 ORTHO05D008010 8.3e-106 387.9 377 52.3
RcHm_v2.0_Chr6g0302911 Rosa chinensis HOM05D006392 ORTHO05D008010 1.4e-105 387.1 370 53.8
THA.LOC104809190 Tarenaya hassleriana HOM05D006392 ORTHO05D008010 2.4e-105 386.3 379 53.6
Ca_00791_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 4.6e-104 382.1 377 52.3
arahy.Tifrunner.gnm1.ann1.8AJY4P Arachis hypogaea HOM05D006392 ORTHO05D008010 1.0e-103 380.9 367 54.8
arahy.Tifrunner.gnm1.ann1.GAE5DS Arachis hypogaea HOM05D006392 ORTHO05D008010 1.3e-103 380.6 367 54.8
Manes.05G146900 Manihot esculenta HOM05D006392 ORTHO05D008010 3.0e-103 379.4 376 51.6
Phvul.005G022200 Phaseolus vulgaris HOM05D006392 ORTHO05D008010 3.9e-103 379.0 386 52.6
Carub.0008s0658 Capsella rubella HOM05D006392 ORTHO05D008010 8.6e-103 377.9 377 50.4
MBI05_g07507_MAGBIO Magnolia biondii HOM05D006392 ORTHO05D008010 1.5e-102 377.1 343 57.4
FvH4_2g38390 Fragaria vesca HOM05D006392 ORTHO05D008010 1.9e-102 376.7 376 51.1
TWI36G0533 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 1.9e-102 376.7 355 53.5
Sabra02G0018100 Salix brachista HOM05D006392 ORTHO05D008010 2.5e-102 376.3 408 47.8
VMungo1080G0965 Vigna mungo HOM05D006392 ORTHO05D008010 2.5e-102 376.3 360 54.2
AL8G18870 Arabidopsis lyrata HOM05D006392 ORTHO05D008010 7.3e-102 374.8 378 50.5
Ca_07152_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 7.3e-102 374.8 380 51.3
Sp7g07860 Schrenkiella parvula HOM05D006392 ORTHO05D008010 7.3e-102 374.8 377 50.1
SGA_v2.0_scaffold11G05922 Striga asiatica HOM05D006392 ORTHO05D008010 1.4e-100 370.5 356 52.2
AT5G42470 Arabidopsis thaliana HOM05D006392 ORTHO05D008010 4.0e-100 369.0 377 49.6
A06p48320 Brassica napus HOM05D006392 ORTHO05D008010 5.2e-100 368.6 377 50.1
BraA06t27702Z Brassica rapa HOM05D006392 ORTHO05D008010 8.9e-100 367.9 377 50.1
Thhalv10003229m.g Eutrema salsugineum HOM05D006392 ORTHO05D008010 1.5e-99 367.1 375 49.6
BcaC06g31757 Brassica carinata HOM05D006392 ORTHO05D008010 8.4e-98 361.3 380 49.2
BcaC02g10765 Brassica carinata HOM05D006392 ORTHO05D008010 1.6e-96 357.1 377 49.3
Aa31LG9G12590 Aethionema arabicum HOM05D006392 ORTHO05D008010 1.7e-95 353.6 355 50.1
C04p25370 Brassica napus HOM05D006392 ORTHO05D008010 3.9e-95 352.4 378 49.2
BolC4t24044H Brassica oleracea HOM05D006392 ORTHO05D008010 3.9e-95 352.4 378 49.2
Sc02g0008600 Simmondsia chinensis HOM05D006392 ORTHO05D008010 7.3e-94 348.2 323 55.1
Peaxi162Scf00438g00835 Petunia axillaris HOM05D006392 ORTHO05D008010 3.6e-93 345.9 356 51.1
MELO3C030484.2 Cucumis melo HOM05D006392 ORTHO05D008010 4.7e-93 345.5 362 51.7
Mapoly0064s0103 Marchantia polymorpha HOM05D006392 ORTHO05D008010 1.8e-92 343.6 380 44.5
FAN15G0959 Fragaria x ananassa HOM05D006392 ORTHO05D008010 3.4e-91 339.3 376 47.1
FAN20G2474 Fragaria x ananassa HOM05D006392 ORTHO05D008010 4.4e-91 339.0 376 47.3
Pp3c4_9730 Physcomitrium patens HOM05D006392 ORTHO05D008010 8.4e-90 334.7 378 45.8
Dinv31849 Davidia involucrata HOM05D006392 ORTHO05D008010 3.2e-89 332.8 302 56.3
Hma1.2p1_0638F.1_g193910 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 3.2e-89 332.8 393 46.3
FAN27G1073 Fragaria x ananassa HOM05D006392 ORTHO05D008010 5.4e-89 332.0 376 46.8
AagrBONN_evm.TU.Sc2ySwM_117.3435 Anthoceros agrestis HOM05D006392 ORTHO05D008010 9.3e-89 331.3 362 45.9
Psat1g169520 Pisum sativum HOM05D006392 ORTHO05D008010 1.9e-86 323.6 326 51.5
Actinidia35835 Actinidia chinensis HOM05D006392 ORTHO05D008010 1.5e-83 313.9 349 47.6
Eucgr.F02661 Eucalyptus grandis HOM05D006392 ORTHO05D008010 1.9e-81 307.0 309 53.4
MD11G1014100 Malus domestica HOM05D006392 ORTHO05D008010 7.9e-80 301.6 277 52.7
SMO196G0156 Selaginella moellendorffii HOM05D006392 ORTHO05D008010 2.3e-79 300.1 376 42.3
TPR.G17497 Trifolium pratense HOM05D006392 ORTHO05D008010 8.1e-77 291.6 259 56.0
COL.COLO4_26140 Corchorus olitorius HOM05D006392 ORTHO05D008010 5.3e-76 288.9 284 53.9
unitig_32.g11136 Utricularia gibba HOM05D006392 ORTHO05D008010 1.2e-72 277.7 320 45.0
vmacro07583 Vaccinium macrocarpon HOM05D006392 ORTHO05D008010 2.1e-72 276.9 304 48.7
Actinidia16990 Actinidia chinensis HOM05D006392 ORTHO05D004187 4.8e-69 265.8 253 53.0
Atru.chr13.285 Acer truncatum HOM05D006392 ORTHO05D008010 9.0e-68 261.5 304 46.1
Cc10_g01630 Coffea canephora HOM05D006392 ORTHO05D008010 2.9e-66 256.5 198 60.1
CBR_g23034 Chara braunii HOM05D006392 ORTHO05D008010 2.5e-65 253.4 387 35.7
Glyma.15G275100 Glycine max HOM05D006392 ORTHO05D008010 2.5e-62 243.4 185 61.6
CARHR181930 Cardamine hirsuta HOM05D006392 ORTHO05D008010 8.2e-61 238.4 184 62.0
Cc10_g01620 Coffea canephora HOM05D006392 ORTHO05D008010 2.3e-47 193.7 160 55.6
Aqoxy4G01015 Aquilegia oxysepala HOM05D006392 ORTHO05D008010 2.2e-42 177.2 155 61.3
Ah.11g039750 Amaranthus hybridus HOM05D006392 ORTHO05D008010 5.7e-38 162.5 148 53.4
RcHm_v2.0_Chr4g0398161 Rosa chinensis HOM05D006392 ORTHO05D008010 2.7e-27 127.1 93 67.7
Actinidia27159 Actinidia chinensis HOM05D006392 ORTHO05D008010 6.5e-26 122.5 179 39.1
RcHm_v2.0_Chr4g0398171 Rosa chinensis HOM05D006392 ORTHO05D008010 2.0e-22 110.9 120 47.5
TPR.G29580 Trifolium pratense HOM05D006392 ORTHO05D008010 2.8e-21 107.1 115 47.8
Cre09.g401367 Chlamydomonas reinhardtii HOM05D006392 ORTHO05D008010 2.2e-13 80.9 140 37.1
ClCG05G018230 Citrullus lanatus HOM05D006392 ORTHO05D008010 6.6e-10 69.3 45 62.2
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 1.2e-06 58.5 44 52.3
Zm00001eb340150 Zea mays HOM05D006392 ORTHO05D008010 7.5e-06 55.8 42 54.8


User provided reference genes

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