Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024001 Vanilla planifolia HOM05D004423 ORTHO05D005464 0.0e+00 1973.7 987 100.0
HPP92_023983 Vanilla planifolia HOM05D004423 ORTHO05D005464 1.7e-305 1052.7 596 91.8
TAR376G0159 Trochodendron aralioides HOM05D004423 ORTHO05D005464 1.7e-228 797.0 995 46.4
MBI01_g09373_MAGBIO Magnolia biondii HOM05D004423 ORTHO05D005464 2.9e-228 796.2 997 46.4
Nn7g38050 Nelumbo nucifera HOM05D004423 ORTHO05D005464 1.5e-221 773.9 1053 43.8
Aqoxy2G04085 Aquilegia oxysepala HOM05D004423 ORTHO05D005464 4.2e-219 765.8 973 43.9
Zm00001eb385260 Zea mays HOM05D004423 ORTHO05D005464 8.7e-217 758.1 979 45.7
Actinidia18027 Actinidia chinensis HOM05D004423 ORTHO05D005464 3.5e-210 736.1 1038 42.3
Actinidia20541 Actinidia chinensis HOM05D004423 ORTHO05D005464 4.8e-207 725.7 1020 42.0
Oeu045082.1 Olea europaea HOM05D004423 ORTHO05D005464 1.4e-206 724.2 1011 41.8
PSO063G1777 Papaver somniferum HOM05D004423 ORTHO05D005464 1.4e-203 714.1 973 44.2
Cfa005315 Carpinus fangiana HOM05D004423 ORTHO05D005464 2.7e-202 709.9 1019 41.2
GSVIVG01023952001 Vitis vinifera HOM05D004423 ORTHO05D005464 6.0e-202 708.8 977 44.1
Haze_02070 Corylus avellana HOM05D004423 ORTHO05D005464 1.8e-201 707.2 1072 40.3
Rhsim11G0195000 Rhododendron simsii HOM05D004423 ORTHO05D005464 8.1e-199 698.4 1026 40.7
Cpa.g.sc20.132 Carica papaya HOM05D004423 ORTHO05D005464 1.1e-198 698.0 985 43.1
Potri.009G139900 Populus trichocarpa HOM05D004423 ORTHO05D005464 1.1e-198 698.0 1027 41.1
QL11p053191 Quercus lobata HOM05D004423 ORTHO05D005464 1.8e-198 697.2 1130 39.5
vmacro02301 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 9.0e-198 694.9 1072 39.8
Hma1.2p1_0032F.1_g019020 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 2.6e-197 693.3 1050 41.5
CANSAT25G0289 Cannabis sativa HOM05D004423 ORTHO05D005464 4.5e-197 692.6 1016 41.7
Sabra09G0108500 Salix brachista HOM05D004423 ORTHO05D005464 1.7e-196 690.6 1028 41.5
Thecc.02G052800 Theobroma cacao HOM05D004423 ORTHO05D005464 3.8e-196 689.5 1066 39.9
Duzib132G0529 Durio zibethinus HOM05D004423 ORTHO05D005464 2.1e-194 683.7 1070 41.5
Manes.11G100750 Manihot esculenta HOM05D004423 ORTHO05D005464 6.0e-194 682.2 1073 39.4
Cc00_g02430 Coffea canephora HOM05D004423 ORTHO05D005464 2.5e-192 676.8 1014 41.0
TPR.G38573 Trifolium pratense HOM05D004423 ORTHO05D005464 2.5e-192 676.8 1010 39.9
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 3.3e-192 676.4 975 41.6
Migut.B00041 Erythranthe guttata HOM05D004423 ORTHO05D005464 4.3e-192 676.0 997 41.3
SalBow1G3590 Salvia bowleyana HOM05D004423 ORTHO05D005464 7.4e-192 675.2 1018 40.4
Lj2g0017242 Lotus japonicus HOM05D004423 ORTHO05D005464 9.6e-192 674.9 1019 40.1
Sopen01g053960 Solanum pennellii HOM05D004423 ORTHO05D005464 2.8e-191 673.3 1022 40.0
Glyma.02G121200 Glycine max HOM05D004423 ORTHO05D005464 3.7e-191 672.9 1033 39.7
Prupe.8G172300 Prunus persica HOM05D004423 ORTHO05D005464 4.8e-191 672.5 975 42.3
CsaV3_6G012570 Cucumis sativus L. HOM05D004423 ORTHO05D005464 8.2e-191 671.8 1021 41.6
Peaxi162Scf00362g00356 Petunia axillaris HOM05D004423 ORTHO05D005464 1.4e-190 671.0 1000 39.1
Gohir.A01G171600 Gossypium hirsutum HOM05D004423 ORTHO05D005464 2.4e-190 670.2 1026 39.4
Lalb_Chr17g0341361 Lupinus albus HOM05D004423 ORTHO05D005464 2.4e-190 670.2 1035 39.5
Nitab4.5_0003679g0020 Nicotiana tabacum HOM05D004423 ORTHO05D005464 4.0e-190 669.5 999 39.6
PGR042G3292 Punica granatum HOM05D004423 ORTHO05D005464 4.0e-190 669.5 976 42.2
Solyc01g111910.3 Solanum lycopersicum HOM05D004423 ORTHO05D005464 4.0e-190 669.5 1024 40.0
Gorai.002G201600 Gossypium raimondii HOM05D004423 ORTHO05D005464 5.3e-190 669.1 1053 39.2
CAN.G1235.36 Capsicum annuum HOM05D004423 ORTHO05D005464 9.0e-190 668.3 984 39.9
HanXRQChr17g0543821 Helianthus annuus HOM05D004423 ORTHO05D005464 5.8e-189 665.6 976 39.5
ClCG02G011090 Citrullus lanatus HOM05D004423 ORTHO05D005464 1.0e-188 664.8 1040 40.9
MD10G1131500 Malus domestica HOM05D004423 ORTHO05D005464 1.7e-188 664.1 979 41.1
Phvul.003G039700 Phaseolus vulgaris HOM05D004423 ORTHO05D005464 1.7e-188 664.1 1014 38.5
Ca_05030_v3 Cicer arietinum L. HOM05D004423 ORTHO05D005464 2.2e-188 663.7 970 41.2
COL.COLO4_18006 Corchorus olitorius HOM05D004423 ORTHO05D005464 1.6e-186 657.5 996 40.2
CiPaw.05G087000 Carya illinoinensis HOM05D004423 ORTHO05D005464 2.1e-186 657.1 897 43.6
ECA246G1499 Erigeron canadensis HOM05D004423 ORTHO05D005464 1.1e-184 651.4 1008 39.9
Sed0008640 Sechium edule HOM05D004423 ORTHO05D005464 1.9e-184 650.6 1025 40.3
Dinv41903 Davidia involucrata HOM05D004423 ORTHO05D005464 5.7e-184 649.0 687 49.2
RcHm_v2.0_Chr6g0279371 Rosa chinensis HOM05D004423 ORTHO05D005464 7.4e-184 648.7 994 40.1
SGA_v2.0_scaffold58G20334 Striga asiatica HOM05D004423 ORTHO05D005464 2.2e-183 647.1 1045 38.0
arahy.Tifrunner.gnm1.ann1.CJIC4D Arachis hypogaea HOM05D004423 ORTHO05D005464 3.7e-183 646.4 1040 38.4
EL10Ac9g21318 Beta vulgaris HOM05D004423 ORTHO05D005464 1.1e-182 644.8 994 40.3
MD05G1128200 Malus domestica HOM05D004423 ORTHO05D005464 1.1e-182 644.8 1006 39.5
FvH4_2g15920 Fragaria vesca HOM05D004423 ORTHO05D005464 1.4e-182 644.4 1003 39.7
FAN15G2581 Fragaria x ananassa HOM05D004423 ORTHO05D005464 2.4e-182 643.7 1000 40.0
DCAR_022414 Daucus carota HOM05D004423 ORTHO05D005464 9.0e-182 641.7 1032 38.5
FAN24G1532 Fragaria x ananassa HOM05D004423 ORTHO05D005464 9.0e-182 641.7 1003 39.7
Ah.01g008070 Amaranthus hybridus HOM05D004423 ORTHO05D005464 1.7e-180 637.5 1007 39.5
Hma1.2p1_0032F.1_g019030 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 2.2e-180 637.1 762 46.7
THA.LOC104824748 Tarenaya hassleriana HOM05D004423 ORTHO05D005464 2.2e-180 637.1 1018 39.3
MELO3C013664.2 Cucumis melo HOM05D004423 ORTHO05D005464 2.9e-180 636.7 1056 40.2
FAN20G1295 Fragaria x ananassa HOM05D004423 ORTHO05D005464 1.4e-179 634.4 1003 39.0
Lj5C174T8 Lonicera japonica HOM05D004423 ORTHO05D005464 2.7e-178 630.2 642 48.6
Glyma.01G063600 Glycine max HOM05D004423 ORTHO05D005464 1.4e-177 627.9 1036 37.9
TWI75G0836 Tripterygium wilfordii HOM05D004423 ORTHO05D005464 3.0e-177 626.7 1077 38.0
CARHR294170 Cardamine hirsuta HOM05D004423 ORTHO05D005464 6.7e-177 625.5 983 39.6
Hund06453 Selenicereus undatus HOM05D004423 ORTHO05D005464 2.2e-175 620.5 1053 38.5
Ciclev10027678m.g Citrus clementina HOM05D004423 ORTHO05D005464 2.8e-175 620.2 1050 37.8
Carub.0007s0033 Capsella rubella HOM05D004423 ORTHO05D005464 1.8e-174 617.5 988 39.2
Gohir.D01G162500 Gossypium hirsutum HOM05D004423 ORTHO05D005464 2.4e-174 617.1 907 40.1
arahy.Tifrunner.gnm1.ann1.YN7PRK Arachis hypogaea HOM05D004423 ORTHO05D005464 3.1e-174 616.7 1001 38.2
Sc18g0006140 Simmondsia chinensis HOM05D004423 ORTHO05D005464 4.1e-174 616.3 994 38.8
AL7G10310 Arabidopsis lyrata HOM05D004423 ORTHO05D005464 2.6e-173 613.6 980 38.8
AT4G38440 Arabidopsis thaliana HOM05D004423 ORTHO05D005464 1.0e-172 611.7 964 39.6
Sp7g37340 Schrenkiella parvula HOM05D004423 ORTHO05D005464 1.7e-172 610.9 973 39.0
Eucgr.G01811 Eucalyptus grandis HOM05D004423 ORTHO05D005464 3.8e-172 609.8 773 44.0
Aa31LG6G16860 Aethionema arabicum HOM05D004423 ORTHO05D005464 1.4e-171 607.8 1011 38.3
Psat2g133680 Pisum sativum HOM05D004423 ORTHO05D005464 7.9e-170 602.1 953 38.6
ATR0322G068 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.7e-169 599.0 1057 37.1
Atru.chr5.3471 Acer truncatum HOM05D004423 ORTHO05D005464 1.8e-166 590.9 1024 37.9
SHI08411 Sapria himalayana HOM05D004423 ORTHO05D005464 3.6e-162 576.6 956 38.2
AUR62012983 Chenopodium quinoa HOM05D004423 ORTHO05D005464 1.5e-160 571.2 781 43.7
Medtr5g046240 Medicago truncatula HOM05D004423 ORTHO05D005464 9.7e-160 568.5 771 41.4
AUR62009995 Chenopodium quinoa HOM05D004423 ORTHO05D005464 2.8e-159 567.0 1083 37.1
C04p46880 Brassica napus HOM05D004423 ORTHO05D005464 5.9e-157 559.3 749 44.5
A04p13130 Brassica napus HOM05D004423 ORTHO05D005464 1.7e-156 557.8 750 43.1
BolC4t26280H Brassica oleracea HOM05D004423 ORTHO05D005464 5.0e-156 556.2 747 43.8
Thhalv10024216m.g Eutrema salsugineum HOM05D004423 ORTHO05D005464 1.9e-155 554.3 934 37.9
BraA04t16972Z Brassica rapa HOM05D004423 ORTHO05D005464 5.5e-155 552.7 750 42.8
unitig_21.g20846 Utricularia gibba HOM05D004423 ORTHO05D005464 4.7e-146 523.1 976 35.9
SHI46553 Sapria himalayana HOM05D004423 ORTHO05D005464 7.5e-144 515.8 957 35.6
CDE09G0821 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 1.6e-130 471.5 679 43.6
Pp3c6_25040 Physcomitrium patens HOM05D004423 ORTHO05D005464 2.1e-122 444.5 966 32.2
VMungo1215G3113 Vigna mungo HOM05D004423 ORTHO05D005464 3.4e-120 437.2 491 45.6
Eucgr.E03994 Eucalyptus grandis HOM05D004423 ORTHO05D005464 1.7e-116 424.9 510 44.7
AagrBONN_evm.TU.Sc2ySwM_369.194 Anthoceros agrestis HOM05D004423 ORTHO05D005464 3.7e-111 407.1 960 32.8
Mapoly0006s0149 Marchantia polymorpha HOM05D004423 ORTHO05D005464 4.4e-104 383.6 1057 30.7
BcaB06g27462 Brassica carinata HOM05D004423 ORTHO05D005464 3.6e-90 337.4 545 38.9
SMO119G0387 Selaginella moellendorffii HOM05D004423 ORTHO05D005464 3.1e-89 334.3 847 30.1
Pp3c14_25290 Physcomitrium patens HOM05D004423 ORTHO05D005464 2.3e-68 265.0 650 29.2
Os06g0574450 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 1.6e-66 258.8 465 40.6
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 4.3e-59 234.2 193 62.7
CDE09G0751 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 1.8e-57 228.8 277 45.8
TAR717G0001 Trochodendron aralioides HOM05D004423 ORTHO05D005464 6.3e-42 177.2 124 69.4
SEGI_28605 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 1.0e-39 169.9 266 36.1
PSO782G0263 Papaver somniferum HOM05D004423 ORTHO05D005464 3.4e-35 154.8 385 35.1
Os06g0574400 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 9.1e-33 146.7 222 39.2
VMungo1215G1157 Vigna mungo HOM05D004423 ORTHO05D005464 3.8e-31 141.4 429 29.1
HPP92_023982 Vanilla planifolia HOM05D004423 ORTHO05D005464 2.7e-29 135.2 111 64.9
SEGI_17262 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 1.5e-27 129.4 126 50.8
VMungo1215G3389 Vigna mungo HOM05D004423 ORTHO05D005464 2.5e-22 112.1 109 53.2
vmacro11788 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 4.0e-20 104.8 165 37.6
Haze_02078 Corylus avellana HOM05D004423 ORTHO05D005464 4.9e-18 97.8 206 34.0
Lj5A174T72 Lonicera japonica HOM05D004423 ORTHO05D005464 4.9e-18 97.8 335 28.4
Dinv41902 Davidia involucrata HOM05D004423 ORTHO05D005464 9.2e-17 93.6 264 31.4
CBR_g45640 Chara braunii HOM05D004423 ORTHO05D005464 5.6e-14 84.3 106 45.3
SEGI_14959 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 8.0e-13 80.5 354 23.4
Hma1.2p1_0032F.1_g019010 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 1.8e-12 79.3 146 37.7
BcaB06g27461 Brassica carinata HOM05D004423 ORTHO05D005464 8.9e-12 77.0 144 35.4
MCO15G359 Micromonas commoda HOM05D004423 ORTHO05D044124 4.4e-11 74.7 592 22.5
SalBow1G2566 Salvia bowleyana HOM05D004423 ORTHO05D000248 6.0e-08 64.3 100 38.0
CBR_g45642 Chara braunii HOM05D004423 ORTHO05D005464 7.8e-08 63.9 444 22.1


User provided reference genes

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