Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_023901 Vanilla planifolia HOM05D000814 ORTHO05D001161 3.7e-94 348.2 175 100.0
HPP92_023819 Vanilla planifolia HOM05D000814 ORTHO05D001161 2.9e-30 136.0 119 71.4
FAN15G1574 Fragaria x ananassa HOM05D000411 ORTHO05D001161 1.9e-18 96.7 143 42.0
FAN20G1959 Fragaria x ananassa HOM05D000411 ORTHO05D001161 1.9e-18 96.7 143 42.0
Actinidia13328 Actinidia chinensis HOM05D000814 ORTHO05D001161 2.5e-18 96.3 132 43.9
Atru.chr7.2121 Acer truncatum HOM05D000814 ORTHO05D001161 1.6e-17 93.6 179 39.1
Sopen08g020840 Solanum pennellii HOM05D000814 ORTHO05D001161 4.7e-17 92.0 178 39.9
arahy.Tifrunner.gnm1.ann1.HTI7FU Arachis hypogaea HOM05D000814 ORTHO05D001161 8.1e-17 91.3 130 46.2
MD15G1094600 Malus domestica HOM05D000814 ORTHO05D001161 1.8e-16 90.1 170 39.4
Zm00001eb119220 Zea mays HOM05D000814 ORTHO05D001161 2.3e-16 89.7 179 38.0
Solyc08g066860.2 Solanum lycopersicum HOM05D000814 ORTHO05D001161 4.0e-16 89.0 178 38.8
PGSC0003DMG400009605 Solanum tuberosum HOM05D000814 ORTHO05D001161 4.0e-16 89.0 178 38.8
Duzib168G0186 Durio zibethinus HOM05D000814 ORTHO05D001161 8.9e-16 87.8 184 37.5
SGA_v2.0_scaffold103G29946 Striga asiatica HOM05D000814 ORTHO05D001161 8.9e-16 87.8 143 42.0
Cc08_g09390 Coffea canephora HOM05D000814 ORTHO05D001161 2.0e-15 86.7 172 37.2
Prupe.1G449700 Prunus persica HOM05D000814 ORTHO05D001161 3.4e-15 85.9 168 38.1
Eucgr.C00587 Eucalyptus grandis HOM05D000814 ORTHO05D001161 7.6e-15 84.7 104 48.1
arahy.Tifrunner.gnm1.ann1.YHN668 Arachis hypogaea HOM05D000814 ORTHO05D001161 9.9e-15 84.3 148 40.5
Phvul.009G108600 Phaseolus vulgaris HOM05D000814 ORTHO05D001161 9.9e-15 84.3 162 39.5
Duzib187G0870 Durio zibethinus HOM05D000814 ORTHO05D001161 1.3e-14 84.0 182 36.3
FvH4_2g35720 Fragaria vesca HOM05D000814 ORTHO05D001161 1.3e-14 84.0 167 36.5
FAN27G1541 Fragaria x ananassa HOM05D000814 ORTHO05D001161 1.3e-14 84.0 167 36.5
GSVIVG01035642001 Vitis vinifera HOM05D000814 ORTHO05D001161 1.3e-14 84.0 178 36.5
Aa31LG2G17120 Aethionema arabicum HOM05D000814 ORTHO05D001161 1.7e-14 83.6 161 39.8
Nitab4.5_0000837g0030 Nicotiana tabacum HOM05D000814 ORTHO05D001161 1.7e-14 83.6 164 37.8
vmacro11065 Vaccinium macrocarpon HOM05D000814 ORTHO05D001161 1.7e-14 83.6 179 38.5
Rhsim02G0179300 Rhododendron simsii HOM05D000814 ORTHO05D001161 2.2e-14 83.2 173 35.8
Nn3g18147 Nelumbo nucifera HOM05D000814 ORTHO05D001161 2.9e-14 82.8 189 34.4
Ca_15602_v3 Cicer arietinum L. HOM05D000411 ORTHO05D000310 4.9e-14 82.0 160 40.0
CAN.G335.3 Capsicum annuum HOM05D000814 ORTHO05D001161 6.4e-14 81.6 164 36.6
RcHm_v2.0_Chr6g0306061 Rosa chinensis HOM05D000814 ORTHO05D001161 6.4e-14 81.6 165 36.4
Thecc.09G043200 Theobroma cacao HOM05D000814 ORTHO05D001161 6.4e-14 81.6 167 38.9
QL12p029143 Quercus lobata HOM05D000814 ORTHO05D001161 8.4e-14 81.3 169 38.5
TWI63G1296 Tripterygium wilfordii HOM05D000814 ORTHO05D001161 8.4e-14 81.3 166 38.0
Gohir.A05G047300 Gossypium hirsutum HOM05D000814 ORTHO05D001161 1.1e-13 80.9 182 35.7
MBI01_g06183_MAGBIO Magnolia biondii HOM05D000814 ORTHO05D001161 1.9e-13 80.1 176 34.1
VMungo1309G2296 Vigna mungo HOM05D000814 ORTHO05D001161 3.2e-13 79.3 184 36.4
Dinv30279 Davidia involucrata HOM05D000814 ORTHO05D001161 4.1e-13 79.0 170 37.6
Manes.16G072600 Manihot esculenta HOM05D000814 ORTHO05D001161 4.1e-13 79.0 118 44.9
Gohir.D05G049200 Gossypium hirsutum HOM05D000814 ORTHO05D001161 5.4e-13 78.6 182 36.3
Gorai.009G050400 Gossypium raimondii HOM05D000814 ORTHO05D001161 5.4e-13 78.6 182 36.3
Lj7C703G6 Lonicera japonica HOM05D000814 ORTHO05D001161 5.4e-13 78.6 145 40.7
TAR624G0788 Trochodendron aralioides HOM05D000814 ORTHO05D001161 5.4e-13 78.6 174 35.6
Manes.03G062200 Manihot esculenta HOM05D000814 ORTHO05D001161 7.1e-13 78.2 186 34.4
SMO115G0016 Selaginella moellendorffii HOM05D000814 ORTHO05D001161 9.2e-13 77.8 156 37.8
SEGI_01770 Sequoiadendron giganteum HOM05D000814 ORTHO05D001161 9.2e-13 77.8 135 39.3
Lsat_1_v5_gn_6_63860 Lactuca sativa HOM05D000814 ORTHO05D001161 1.2e-12 77.4 161 34.8
Ciclev10008414m.g Citrus clementina HOM05D000814 ORTHO05D001161 2.1e-12 76.6 168 35.1
HanXRQChr12g0380011 Helianthus annuus HOM05D000814 ORTHO05D001161 4.6e-12 75.5 144 36.1
Nitab4.5_0000151g0320 Nicotiana tabacum HOM05D000814 ORTHO05D001161 7.8e-12 74.7 160 34.4
Lalb_Chr08g0243131 Lupinus albus HOM05D000814 ORTHO05D001161 1.0e-11 74.3 162 34.0
Sabra06G0187500 Salix brachista HOM05D000814 ORTHO05D001161 1.3e-11 73.9 176 35.8
Peaxi162Scf00161g00511 Petunia axillaris HOM05D000814 ORTHO05D001161 1.7e-11 73.6 162 34.6
Medtr3g110182 Medicago truncatula HOM05D000814 ORTHO05D001161 2.3e-11 73.2 167 35.9
ClCG11G015180 Citrullus lanatus HOM05D000814 ORTHO05D001161 6.6e-11 71.6 172 34.9
MELO3C003460.2 Cucumis melo HOM05D000814 ORTHO05D001161 8.6e-11 71.2 172 34.9
CsaV3_3G048590 Cucumis sativus L. HOM05D000814 ORTHO05D001161 8.6e-11 71.2 172 34.9
Sabra18G0042700 Salix brachista HOM05D000814 ORTHO05D001161 1.5e-10 70.5 160 35.6
Glyma.04G083000 Glycine max HOM05D000814 ORTHO05D001161 2.5e-10 69.7 187 31.6
Sc09g0009130 Simmondsia chinensis HOM05D000814 ORTHO05D001161 2.5e-10 69.7 130 40.8
Nn6g33916 Nelumbo nucifera HOM05D000814 ORTHO05D005211 4.3e-10 68.9 135 38.5
Sabra18G0041400 Salix brachista HOM05D000814 ORTHO05D001161 4.3e-10 68.9 164 34.8
Sed0007357 Sechium edule HOM05D000814 ORTHO05D001161 5.6e-10 68.6 173 34.7
TAR375G0084 Trochodendron aralioides HOM05D000814 ORTHO05D005211 5.6e-10 68.6 133 37.6
TPR.G1352 Trifolium pratense HOM05D000814 ORTHO05D001161 7.3e-10 68.2 159 36.5
PGR031G1946 Punica granatum HOM05D000814 ORTHO05D001161 1.2e-09 67.4 156 34.0
Lj1g0022815 Lotus japonicus HOM05D000814 ORTHO05D001161 1.6e-09 67.0 140 34.3
Potri.018G042000 Populus trichocarpa HOM05D000814 ORTHO05D001161 2.8e-09 66.2 162 33.3
Aqoxy5G03851 Aquilegia oxysepala HOM05D000814 ORTHO05D005211 6.2e-09 65.1 142 36.6
CSS0027660 Camellia sinensis var. sinensis HOM05D000814 ORTHO05D005211 1.8e-08 63.5 122 36.1
CSS0045982 Camellia sinensis var. sinensis HOM05D000814 ORTHO05D005211 1.8e-08 63.5 122 36.1
Duzib084G0292 Durio zibethinus HOM05D000814 ORTHO05D005211 3.1e-08 62.8 154 32.5
Atru.chr9.1292 Acer truncatum HOM05D000814 ORTHO05D005211 8.9e-08 61.2 132 34.1
Dinv39158 Davidia involucrata HOM05D000814 ORTHO05D005211 8.9e-08 61.2 135 36.3
Glyma.06G084400 Glycine max HOM05D000814 ORTHO05D001161 8.9e-08 61.2 137 35.8
Gohir.D08G187600 Gossypium hirsutum HOM05D000814 ORTHO05D005211 8.9e-08 61.2 132 35.6
Peaxi162Scf00209g00017 Petunia axillaris HOM05D000814 ORTHO05D005211 8.9e-08 61.2 131 35.9
Psat5g022200 Pisum sativum HOM05D000814 ORTHO05D001161 8.9e-08 61.2 137 35.0
Hma1.2p1_1136F.1_g260500 Hydrangea macrophylla HOM05D000814 ORTHO05D005211 1.2e-07 60.8 136 36.8
Atru.chr7.2105 Acer truncatum HOM05D000814 ORTHO05D001161 1.5e-07 60.5 49 65.3
ECA233G5265 Erigeron canadensis HOM05D000814 ORTHO05D005211 1.5e-07 60.5 127 30.7
SEGI_32936 Sequoiadendron giganteum HOM05D000814 ORTHO05D001161 1.5e-07 60.5 103 38.8
CANSAT25G1950 Cannabis sativa HOM05D000814 ORTHO05D001161 2.0e-07 60.1 182 29.7
Rhsim11G0023800 Rhododendron simsii HOM05D000814 ORTHO05D005211 2.0e-07 60.1 114 36.8
Cc08_g12270 Coffea canephora HOM05D000814 ORTHO05D005211 3.4e-07 59.3 134 34.3
Duzib068G1367 Durio zibethinus HOM05D000814 ORTHO05D005211 3.4e-07 59.3 153 35.3
Glyma.01G207900 Glycine max HOM05D000814 ORTHO05D005211 3.4e-07 59.3 136 36.0
Lalb_Chr16g0379521 Lupinus albus HOM05D000814 ORTHO05D005211 3.4e-07 59.3 135 36.3
Hund19521 Selenicereus undatus HOM05D000814 ORTHO05D001161 3.4e-07 59.3 200 29.5
Thecc.03G249400 Theobroma cacao HOM05D000814 ORTHO05D005211 4.4e-07 58.9 134 33.6
Phvul.007G061200 Phaseolus vulgaris HOM05D000814 ORTHO05D001161 5.8e-07 58.5 188 27.7
Sabra03G0048300 Salix brachista HOM05D000814 ORTHO05D005211 5.8e-07 58.5 136 36.0
ATR0315G031 Amborella trichopoda HOM05D000814 ORTHO05D001161 7.6e-07 58.2 168 31.5
CiPaw.11G080500 Carya illinoinensis HOM05D000814 ORTHO05D005211 7.6e-07 58.2 138 33.3
PSO063G2296 Papaver somniferum HOM05D000814 ORTHO05D005211 7.6e-07 58.2 146 32.9
PSO782G1197 Papaver somniferum HOM05D000814 ORTHO05D005211 7.6e-07 58.2 146 32.9
ATR0665G284 Amborella trichopoda HOM05D000814 ORTHO05D001161 9.9e-07 57.8 160 30.0
Migut.A01115 Erythranthe guttata HOM05D000814 ORTHO05D005211 9.9e-07 57.8 149 32.2
Gorai.004G197300 Gossypium raimondii HOM05D000814 ORTHO05D005211 9.9e-07 57.8 132 34.8
TWI60G1470 Tripterygium wilfordii HOM05D000814 ORTHO05D005211 9.9e-07 57.8 126 34.1
Duzib205G0663 Durio zibethinus HOM05D000814 ORTHO05D005211 1.3e-06 57.4 126 34.9
ECA233G5302 Erigeron canadensis HOM05D000814 ORTHO05D001161 1.7e-06 57.0 150 30.0
Thhalv10020762m.g Eutrema salsugineum HOM05D000814 ORTHO05D001161 1.7e-06 57.0 149 30.2
Potri.003G077900 Populus trichocarpa HOM05D000814 ORTHO05D005211 1.7e-06 57.0 107 35.5
Ah.16g105660 Amaranthus hybridus HOM05D000814 ORTHO05D001161 2.2e-06 56.6 30 86.7
EL10Ac2g04035 Beta vulgaris HOM05D000814 ORTHO05D001161 2.2e-06 56.6 30 86.7
Cpa.g.sc29.175 Carica papaya HOM05D000814 ORTHO05D005211 2.2e-06 56.6 140 32.1
Hma1.2p1_0393F.1_g143060 Hydrangea macrophylla HOM05D000814 ORTHO05D001161 2.2e-06 56.6 170 32.4
Actinidia02142 Actinidia chinensis HOM05D000814 ORTHO05D005211 2.9e-06 56.2 114 35.1
Glyma.11G034400 Glycine max HOM05D000814 ORTHO05D005211 2.9e-06 56.2 133 35.3
Phvul.002G057300 Phaseolus vulgaris HOM05D000814 ORTHO05D005211 2.9e-06 56.2 140 34.3
VMungo0720G2520 Vigna mungo HOM05D000814 ORTHO05D001161 2.9e-06 56.2 186 26.9
VMungo1215G2706 Vigna mungo HOM05D000814 ORTHO05D005211 2.9e-06 56.2 140 32.9
Atru.chr7.2104 Acer truncatum HOM05D000814 ORTHO05D001161 3.8e-06 55.8 53 56.6
AT4G17350 Arabidopsis thaliana HOM05D000814 ORTHO05D005211 3.8e-06 55.8 125 33.6
Ciclev10020521m.g Citrus clementina HOM05D000814 ORTHO05D005211 3.8e-06 55.8 110 35.5
AUR62041713 Chenopodium quinoa HOM05D000814 ORTHO05D001161 4.9e-06 55.5 200 31.5
HanXRQChr17g0549341 Helianthus annuus HOM05D000814 ORTHO05D005211 4.9e-06 55.5 110 35.5
Lj4g0027875 Lotus japonicus HOM05D000814 ORTHO05D005211 4.9e-06 55.5 144 31.2
BolC7t45378H Brassica oleracea HOM05D006567 ORTHO05D009430 6.4e-06 55.1 150 28.7
Ca_10857_v3 Cicer arietinum L. HOM05D000814 ORTHO05D001161 6.4e-06 55.1 161 29.8
Migut.O00826 Erythranthe guttata HOM05D000814 ORTHO05D001161 6.4e-06 55.1 56 51.8
MD06G1056800 Malus domestica HOM05D000814 ORTHO05D005211 6.4e-06 55.1 114 33.3
SalBow4G0770 Salvia bowleyana HOM05D000814 ORTHO05D001161 6.4e-06 55.1 138 33.3
vmacro00194 Vaccinium macrocarpon HOM05D000814 ORTHO05D005211 6.4e-06 55.1 116 31.9
arahy.Tifrunner.gnm1.ann1.2V173I Arachis hypogaea HOM05D000814 ORTHO05D005211 8.4e-06 54.7 122 33.6
arahy.Tifrunner.gnm1.ann1.EJ5RI6 Arachis hypogaea HOM05D000814 ORTHO05D005211 8.4e-06 54.7 122 33.6
COL.COLO4_37152 Corchorus olitorius HOM05D000814 ORTHO05D005211 8.4e-06 54.7 117 33.3
Gohir.A08G169200 Gossypium hirsutum HOM05D000814 ORTHO05D005211 8.4e-06 54.7 126 34.1


User provided reference genes

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