Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 2.8e-86 322.0 172 100.0
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 4.9e-59 231.5 160 75.0
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 1.6e-57 226.5 164 71.3
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 2.7e-57 225.7 164 71.3
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 2.7e-57 225.7 164 70.1
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 6.0e-57 224.6 153 74.5
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 1.0e-56 223.8 159 73.0
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 2.3e-56 222.6 162 71.0
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 3.9e-56 221.9 155 72.9
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 5.1e-56 221.5 159 71.7
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 5.1e-56 221.5 159 71.7
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 1.1e-55 220.3 161 71.4
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 1.5e-55 219.9 163 69.9
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 1.9e-55 219.5 155 70.3
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 3.3e-55 218.8 171 67.8
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 5.6e-55 218.0 157 72.0
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 5.6e-55 218.0 155 73.5
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 9.6e-55 217.2 156 73.1
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.3e-54 216.9 159 70.4
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 1.6e-54 216.5 159 70.4
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 2.1e-54 216.1 149 74.5
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 2.1e-54 216.1 152 75.7
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 2.8e-54 215.7 155 72.9
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 2.8e-54 215.7 156 71.8
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 8.1e-54 214.2 156 69.9
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 1.8e-53 213.0 161 66.5
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.8e-53 213.0 156 69.9
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 2.4e-53 212.6 156 69.2
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 4.0e-53 211.8 142 78.2
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 6.9e-53 211.1 173 63.6
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 6.9e-53 211.1 144 74.3
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 6.9e-53 211.1 153 71.2
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 9.0e-53 210.7 160 67.5
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 1.5e-52 209.9 152 71.7
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 1.5e-52 209.9 152 69.7
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 2.0e-52 209.5 160 67.5
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 2.0e-52 209.5 160 67.5
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 2.6e-52 209.1 157 66.9
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 3.4e-52 208.8 164 65.9
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 3.4e-52 208.8 151 69.5
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 3.4e-52 208.8 157 68.2
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 4.5e-52 208.4 144 73.6
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 4.5e-52 208.4 139 75.5
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 9.9e-52 207.2 172 62.8
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 1.3e-51 206.8 162 65.4
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 1.3e-51 206.8 165 64.8
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 2.2e-51 206.1 146 74.0
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 2.9e-51 205.7 160 66.2
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 2.9e-51 205.7 160 66.9
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 3.8e-51 205.3 152 69.7
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 3.8e-51 205.3 152 69.7
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 3.8e-51 205.3 152 69.7
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 3.8e-51 205.3 150 65.3
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 4.9e-51 204.9 151 70.2
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 4.9e-51 204.9 163 65.0
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 8.4e-51 204.1 155 66.5
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.9e-50 203.0 188 59.6
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 2.4e-50 202.6 153 68.6
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 3.2e-50 202.2 155 65.2
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 1.2e-49 200.3 159 66.7
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 1.2e-49 200.3 138 73.9
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 2.1e-49 199.5 157 66.9
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 3.5e-49 198.7 150 64.0
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 7.9e-49 197.6 192 56.8
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 1.8e-48 196.4 139 72.7
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 2.3e-48 196.1 154 66.9
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 2.3e-48 196.1 138 73.2
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 1.1e-47 193.7 154 68.2
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 1.5e-47 193.4 155 65.8
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.5e-47 193.4 121 78.5
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 1.5e-47 193.4 152 67.1
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.9e-47 193.0 134 73.9
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 2.5e-47 192.6 160 64.4
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 5.6e-47 191.4 152 65.1
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 7.4e-47 191.0 131 74.8
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 7.4e-47 191.0 135 73.3
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 2.8e-46 189.1 146 67.8
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 6.2e-46 188.0 136 72.1
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 6.2e-46 188.0 154 66.2
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 8.1e-46 187.6 151 66.2
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 1.1e-45 187.2 138 70.3
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 1.8e-45 186.4 138 69.6
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 3.1e-45 185.7 145 70.3
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 3.1e-45 185.7 141 66.7
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 5.3e-45 184.9 130 73.1
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 1.2e-44 183.7 151 64.9
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 2.0e-44 183.0 122 75.4
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 3.4e-44 182.2 147 66.7
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 4.5e-44 181.8 138 69.6
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 7.6e-44 181.0 182 57.7
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 1.3e-43 180.3 140 68.6
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 1.3e-43 180.3 141 68.8
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 1.3e-43 180.3 141 68.8
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 2.2e-43 179.5 141 68.8
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 2.9e-43 179.1 138 66.7
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 3.8e-43 178.7 131 71.8
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 3.8e-43 178.7 131 71.8
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 4.9e-43 178.3 133 70.7
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 4.9e-43 178.3 133 70.7
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 4.9e-43 178.3 131 71.0
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 8.4e-43 177.6 138 67.4
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 1.9e-42 176.4 138 65.9
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 3.2e-42 175.6 152 61.8
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 5.5e-42 174.9 104 82.7
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 1.2e-41 173.7 118 74.6
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 6.0e-41 171.4 142 62.7
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 1.0e-40 170.6 107 77.6
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 1.8e-40 169.9 119 73.1
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 5.1e-40 168.3 120 70.0
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 1.5e-39 166.8 110 74.5
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 2.8e-38 162.5 127 66.1
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 3.7e-38 162.2 128 69.5
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 6.2e-38 161.4 128 69.5
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 6.9e-37 157.9 109 76.1
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 2.6e-36 156.0 94 81.9
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 1.6e-33 146.7 103 75.7
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 3.5e-33 145.6 157 51.6
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 7.9e-33 144.4 118 63.6
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 3.0e-32 142.5 101 72.3
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 5.1e-32 141.7 137 51.1
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 4.8e-30 135.2 101 69.3
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 2.4e-29 132.9 106 63.2
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 1.4e-26 123.6 66 100.0
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 7.2e-26 121.3 84 73.8
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 1.0e-24 117.5 79 73.4
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 5.3e-21 105.1 74 75.7
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 1.3e-19 100.5 127 44.1
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 5.0e-19 98.6 118 53.4
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 1.9e-18 96.7 137 42.3
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 6.1e-17 91.7 126 41.3
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 1.0e-16 90.9 112 49.1
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 1.7e-14 83.6 99 52.5
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 7.7e-12 74.7 53 66.0
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 1.4e-10 70.5 52 67.3
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 4.2e-10 68.9 55 65.5
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 1.2e-09 67.4 48 68.8
C08p44260 Brassica napus HOM05D005569 ORTHO05D007052 6.3e-06 55.1 39 74.4


User provided reference genes

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