Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_023784 Vanilla planifolia HOM05D006202 ORTHO05D008227 9.1e-259 896.3 442 100.0
Os12g0507000 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 2.7e-162 575.9 402 72.1
TAR369G0651 Trochodendron aralioides HOM05D006202 ORTHO05D008227 1.1e-160 570.5 376 73.7
MBI04_g33961_MAGBIO Magnolia biondii HOM05D006202 ORTHO05D008227 1.5e-160 570.1 355 77.2
Zm00001eb244230 Zea mays HOM05D006202 ORTHO05D008227 3.3e-160 568.9 404 71.0
Nn2g15679 Nelumbo nucifera HOM05D006202 ORTHO05D008227 3.7e-159 565.5 355 76.9
Manes.10G152100 Manihot esculenta HOM05D006202 ORTHO05D008227 6.3e-159 564.7 347 78.1
Sed0014986 Sechium edule HOM05D006202 ORTHO05D008227 6.3e-159 564.7 347 77.5
Actinidia21584 Actinidia chinensis HOM05D006202 ORTHO05D008227 1.1e-158 563.9 347 77.8
Aa31LG5G5070 Aethionema arabicum HOM05D006202 ORTHO05D008227 1.8e-158 563.1 359 74.1
Os02g0258900 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 2.4e-158 562.8 360 75.8
Glyma.15G268400 Glycine max HOM05D006202 ORTHO05D008227 3.1e-158 562.4 346 76.6
Dinv43939 Davidia involucrata HOM05D006202 ORTHO05D008227 4.1e-158 562.0 347 77.5
CSS0029964 Camellia sinensis var. sinensis HOM05D006202 ORTHO05D008227 5.3e-158 561.6 344 77.6
vmacro21164 Vaccinium macrocarpon HOM05D006202 ORTHO05D008227 5.3e-158 561.6 347 77.8
Aqoxy1G00030 Aquilegia oxysepala HOM05D006202 ORTHO05D008227 1.5e-157 560.1 346 76.9
CiPaw.02G012300 Carya illinoinensis HOM05D006202 ORTHO05D008227 4.5e-157 558.5 347 77.2
MD02G1319400 Malus domestica HOM05D006202 ORTHO05D008227 5.9e-157 558.1 350 76.3
TWI73G0821 Tripterygium wilfordii HOM05D006202 ORTHO05D008227 5.9e-157 558.1 354 74.9
Lj9C620G10 Lonicera japonica HOM05D006202 ORTHO05D008227 1.0e-156 557.4 347 76.4
Rhsim03G0068600 Rhododendron simsii HOM05D006202 ORTHO05D008227 1.0e-156 557.4 363 74.7
Nitab4.5_0000468g0040 Nicotiana tabacum HOM05D006202 ORTHO05D008227 1.3e-156 557.0 352 76.4
QL04p001552 Quercus lobata HOM05D006202 ORTHO05D008227 1.7e-156 556.6 347 76.4
Glyma.08G157800 Glycine max HOM05D006202 ORTHO05D008227 2.9e-156 555.8 410 67.8
Potri.009G024100 Populus trichocarpa HOM05D006202 ORTHO05D008227 2.9e-156 555.8 406 69.0
Cfa010710 Carpinus fangiana HOM05D006202 ORTHO05D008227 5.0e-156 555.1 347 76.4
Lalb_Chr01g0015151 Lupinus albus HOM05D006202 ORTHO05D008227 5.0e-156 555.1 347 75.2
Oeu060701.1 Olea europaea HOM05D006202 ORTHO05D008227 5.0e-156 555.1 366 73.5
PGSC0003DMG401028974 Solanum tuberosum HOM05D006202 ORTHO05D008227 8.5e-156 554.3 347 76.7
arahy.Tifrunner.gnm1.ann1.03K86Q Arachis hypogaea HOM05D006202 ORTHO05D008227 1.1e-155 553.9 375 71.2
Lj3g0005275 Lotus japonicus HOM05D006202 ORTHO05D008227 1.4e-155 553.5 347 75.8
Peaxi162Scf00402g00616 Petunia axillaris HOM05D006202 ORTHO05D008227 1.9e-155 553.1 346 76.6
Solyc01g073730.4 Solanum lycopersicum HOM05D006202 ORTHO05D008227 2.5e-155 552.7 352 75.6
ATR0605G327 Amborella trichopoda HOM05D006202 ORTHO05D008227 3.2e-155 552.4 377 73.2
Nitab4.5_0010722g0010 Nicotiana tabacum HOM05D006202 ORTHO05D008227 3.2e-155 552.4 352 75.9
Sopen01g033340 Solanum pennellii HOM05D006202 ORTHO05D008227 3.2e-155 552.4 352 75.6
Cc02_g26930 Coffea canephora HOM05D006202 ORTHO05D008227 4.2e-155 552.0 342 76.0
Haze_03268 Corylus avellana HOM05D006202 ORTHO05D008227 4.2e-155 552.0 347 75.8
Medtr2g061710 Medicago truncatula HOM05D006202 ORTHO05D008227 4.2e-155 552.0 345 75.9
TPR.G16148 Trifolium pratense HOM05D006202 ORTHO05D008227 4.2e-155 552.0 345 75.9
PSO384G0467 Papaver somniferum HOM05D006202 ORTHO05D008227 7.2e-155 551.2 404 68.1
arahy.Tifrunner.gnm1.ann1.Y9YBLC Arachis hypogaea HOM05D006202 ORTHO05D008227 9.4e-155 550.8 347 75.5
SGA_v2.0_scaffold5G03106 Striga asiatica HOM05D006202 ORTHO05D008227 9.4e-155 550.8 347 76.4
RcHm_v2.0_Chr1g0313251 Rosa chinensis HOM05D006202 ORTHO05D008227 2.1e-154 549.7 351 74.1
ClCG09G003710 Citrullus lanatus HOM05D006202 ORTHO05D008227 2.7e-154 549.3 351 74.9
THA.LOC104815880 Tarenaya hassleriana HOM05D006202 ORTHO05D008227 2.7e-154 549.3 347 75.5
VMungo1080G0924 Vigna mungo HOM05D006202 ORTHO05D008227 2.7e-154 549.3 353 73.7
AL4G27290 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 8.0e-154 547.7 347 74.9
Cpa.g.sc189.4 Carica papaya HOM05D006202 ORTHO05D008227 1.0e-153 547.4 348 75.3
Prupe.1G561800 Prunus persica HOM05D006202 ORTHO05D008227 1.0e-153 547.4 346 75.7
AT2G31955 Arabidopsis thaliana HOM05D006202 ORTHO05D008227 1.4e-153 547.0 347 74.4
FvH4_5g30330 Fragaria vesca HOM05D006202 ORTHO05D008227 1.4e-153 547.0 346 76.6
CAN.G129.48 Capsicum annuum HOM05D006202 ORTHO05D008227 2.3e-153 546.2 352 75.0
Ah.14g085700 Amaranthus hybridus HOM05D006202 ORTHO05D008227 3.9e-153 545.4 348 74.4
Phvul.005G042000 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 3.9e-153 545.4 346 74.9
Carub.0004s1327 Capsella rubella HOM05D006202 ORTHO05D008227 5.2e-153 545.0 329 78.1
FAN18G2168 Fragaria x ananassa HOM05D006202 ORTHO05D008227 5.2e-153 545.0 346 76.3
Sp4g14320 Schrenkiella parvula HOM05D006202 ORTHO05D008227 5.2e-153 545.0 334 76.9
FAN04G1730 Fragaria x ananassa HOM05D006202 ORTHO05D008227 6.7e-153 544.7 346 76.0
Ca_03201_v3 Cicer arietinum L. HOM05D006202 ORTHO05D008227 8.8e-153 544.3 358 73.5
PSO339G0702 Papaver somniferum HOM05D006202 ORTHO05D008227 8.8e-153 544.3 351 74.1
ECA234G4350 Erigeron canadensis HOM05D006202 ORTHO05D008227 1.1e-152 543.9 351 75.5
Eucgr.A00275 Eucalyptus grandis HOM05D006202 ORTHO05D008227 1.1e-152 543.9 350 74.6
FAN13G0191 Fragaria x ananassa HOM05D006202 ORTHO05D008227 1.1e-152 543.9 346 76.6
Migut.I00539 Erythranthe guttata HOM05D006202 ORTHO05D008227 1.5e-152 543.5 347 74.6
Eucgr.A00079 Eucalyptus grandis HOM05D006202 ORTHO05D008227 1.5e-152 543.5 358 73.7
arahy.Tifrunner.gnm1.ann1.YK6119 Arachis hypogaea HOM05D006202 ORTHO05D008227 2.0e-152 543.1 375 70.4
AUR62034625 Chenopodium quinoa HOM05D006202 ORTHO05D008227 3.3e-152 542.3 341 76.0
Migut.B01400 Erythranthe guttata HOM05D006202 ORTHO05D008227 4.4e-152 542.0 352 73.9
Thhalv10016791m.g Eutrema salsugineum HOM05D006202 ORTHO05D008227 4.4e-152 542.0 345 74.5
BcaC01g05926 Brassica carinata HOM05D006202 ORTHO05D008227 5.7e-152 541.6 358 72.9
Sc10g0005310 Simmondsia chinensis HOM05D006202 ORTHO05D008227 7.4e-152 541.2 352 74.4
BraA03t11059Z Brassica rapa HOM05D006202 ORTHO05D008227 9.7e-152 540.8 329 77.2
FAN08G1924 Fragaria x ananassa HOM05D006202 ORTHO05D008227 1.7e-151 540.0 347 75.2
GSVIVG01001357001 Vitis vinifera HOM05D006202 ORTHO05D008227 1.7e-151 540.0 327 78.9
AUR62036652 Chenopodium quinoa HOM05D006202 ORTHO05D008227 2.2e-151 539.7 361 72.3
Duzib168G0949 Durio zibethinus HOM05D006202 ORTHO05D008227 2.2e-151 539.7 329 77.8
MSTRG.28100 Avicennia marina HOM05D006202 ORTHO05D008227 2.8e-151 539.3 347 74.9
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 3.7e-151 538.9 349 73.9
Ciclev10031726m.g Citrus clementina HOM05D006202 ORTHO05D008227 4.8e-151 538.5 353 73.4
HanXRQChr16g0520351 Helianthus annuus HOM05D006202 ORTHO05D008227 6.3e-151 538.1 358 73.2
Lsat_1_v5_gn_4_46560 Lactuca sativa HOM05D006202 ORTHO05D008227 6.3e-151 538.1 384 69.3
Phvul.005G041900 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 1.8e-150 536.6 327 77.4
SalBow5G5675 Salvia bowleyana HOM05D006202 ORTHO05D008227 5.3e-150 535.0 347 75.8
Atru.chr11.2704 Acer truncatum HOM05D006202 ORTHO05D008227 9.1e-150 534.3 404 66.1
BolC3t14483H Brassica oleracea HOM05D006202 ORTHO05D008227 9.1e-150 534.3 359 72.1
DCAR_001807 Daucus carota HOM05D006202 ORTHO05D008227 1.0e-148 530.8 347 73.8
Gorai.004G013400 Gossypium raimondii HOM05D006202 ORTHO05D008227 1.3e-148 530.4 337 74.8
Sabra09G0015400 Salix brachista HOM05D006202 ORTHO05D008227 5.0e-148 528.5 401 66.6
Gohir.A08G008900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 1.5e-147 526.9 337 73.9
Gohir.D08G018900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 1.5e-147 526.9 337 74.2
Thecc.09G200100 Theobroma cacao HOM05D006202 ORTHO05D008227 1.5e-147 526.9 360 69.4
unitig_749.g13486 Utricularia gibba HOM05D006202 ORTHO05D008227 1.5e-147 526.9 346 73.4
EL10Ac3g06182 Beta vulgaris HOM05D006202 ORTHO05D008227 5.5e-147 525.0 340 73.8
CsaV3_7G031490 Cucumis sativus L. HOM05D006202 ORTHO05D008227 2.1e-146 523.1 318 78.0
CANSAT80G0703 Cannabis sativa HOM05D006202 ORTHO05D008227 1.1e-139 500.7 348 69.0
A03p17940 Brassica napus HOM05D000200 ORTHO05D000262 2.1e-138 496.5 306 76.5
C03p21020 Brassica napus HOM05D000200 ORTHO05D000262 1.8e-137 493.4 335 71.0
Mapoly0045s0149 Marchantia polymorpha HOM05D006202 ORTHO05D008227 2.3e-137 493.0 334 70.7
Pp3c5_22480 Physcomitrium patens HOM05D006202 ORTHO05D008227 8.8e-137 491.1 335 69.6
SMO361G0213 Selaginella moellendorffii HOM05D006202 ORTHO05D008227 8.8e-137 491.1 391 65.0
SEGI_40145 Sequoiadendron giganteum HOM05D006202 ORTHO05D008227 5.4e-134 481.9 338 70.4
CDE06G1615 Ceratophyllum demersum HOM05D006202 ORTHO05D008227 1.1e-131 474.2 329 71.4
CBR_g36677 Chara braunii HOM05D006202 ORTHO05D008227 1.9e-131 473.4 379 60.9
Actinidia15848 Actinidia chinensis HOM05D006202 ORTHO05D008227 1.4e-129 467.2 342 69.0
Potri.001G230604 Populus trichocarpa HOM05D006202 ORTHO05D008227 4.6e-117 425.6 341 64.2
arahy.Tifrunner.gnm1.ann1.JS3HL2 Arachis hypogaea HOM05D006202 ORTHO05D008227 1.0e-116 424.5 347 62.5
MCO15G349 Micromonas commoda HOM05D006202 ORTHO05D008227 7.3e-115 418.3 323 59.4
AL80U10060 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 9.5e-115 417.9 347 62.0
Cre13.g602901 Chlamydomonas reinhardtii HOM05D006202 ORTHO05D008227 6.0e-109 398.7 386 52.8
PRCOL_00002201 Prasinoderma coloniale HOM05D006202 ORTHO05D008227 1.9e-107 393.7 327 56.9
TAR369G1105 Trochodendron aralioides HOM05D006202 ORTHO05D008227 1.4e-105 387.5 237 76.8
MELO3C023505.2 Cucumis melo HOM05D006202 ORTHO05D008227 1.5e-104 384.0 232 78.0
CARHR125690 Cardamine hirsuta HOM05D006202 ORTHO05D008227 1.6e-101 374.0 232 76.3
Hund12940 Selenicereus undatus HOM05D006202 ORTHO05D008227 3.5e-101 372.9 251 72.1
Psat1g128920 Pisum sativum HOM05D006202 ORTHO05D008227 5.1e-100 369.0 245 73.1
Pp3c6_6420 Physcomitrium patens HOM05D006202 ORTHO05D008227 1.4e-97 360.9 327 56.0
Cfa022704 Carpinus fangiana HOM05D006202 ORTHO05D008227 1.6e-90 337.4 363 48.8
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 2.6e-64 250.4 320 40.9
SHI12251 Sapria himalayana HOM05D006202 ORTHO05D008227 5.5e-62 242.7 159 74.2
SHI12244 Sapria himalayana HOM05D006202 ORTHO05D008227 4.8e-58 229.6 165 66.7
AagrBONN_evm.TU.Sc2ySwM_344.4902 Anthoceros agrestis HOM05D006202 ORTHO05D008227 1.8e-57 227.6 168 66.1
ATR0605G108 Amborella trichopoda HOM05D006202 ORTHO05D008227 5.5e-46 189.5 131 72.5
SHI12245 Sapria himalayana HOM05D006202 ORTHO05D008227 9.4e-46 188.7 147 65.3
SHI34064 Sapria himalayana HOM05D006202 ORTHO05D367267 7.2e-14 82.8 59 71.2
A05p13580 Brassica napus HOM05D006202 ORTHO05D033532 4.4e-11 73.6 88 46.6
BraA05t20295Z Brassica rapa HOM05D006202 ORTHO05D033532 4.4e-11 73.6 88 46.6
TAR623G0116 Trochodendron aralioides HOM05D006202 ORTHO05D414173 1.1e-06 58.9 35 74.3


User provided reference genes

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