Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 6.0e-117 424.1 200 100.0
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 3.9e-116 421.4 200 99.0
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 6.7e-60 234.6 198 58.6
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 1.5e-59 233.4 194 58.2
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 2.0e-59 233.0 202 55.4
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 4.4e-59 231.9 193 54.9
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 5.7e-59 231.5 195 55.4
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 2.2e-58 229.6 197 55.3
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 3.7e-58 228.8 195 54.9
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 3.7e-58 228.8 202 54.0
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 6.3e-58 228.0 195 53.8
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 6.3e-58 228.0 193 56.0
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 6.3e-58 228.0 202 54.0
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 1.4e-57 226.9 196 54.6
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 1.8e-57 226.5 195 54.4
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 3.1e-57 225.7 192 54.7
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 7.0e-57 224.6 192 56.8
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 9.1e-57 224.2 195 53.8
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 9.1e-57 224.2 192 55.7
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 9.1e-57 224.2 192 56.2
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 9.1e-57 224.2 192 56.2
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 1.2e-56 223.8 193 55.4
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 1.2e-56 223.8 192 54.2
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 2.0e-56 223.0 196 54.6
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 2.7e-56 222.6 115 84.3
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 3.5e-56 222.2 194 54.6
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 4.5e-56 221.9 203 53.7
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 5.9e-56 221.5 205 52.2
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 5.9e-56 221.5 201 54.7
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 7.7e-56 221.1 199 52.8
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 7.7e-56 221.1 135 72.6
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 1.0e-55 220.7 195 54.9
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 1.3e-55 220.3 210 51.4
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 1.7e-55 219.9 192 53.6
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 6.5e-55 218.0 194 54.1
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 8.5e-55 217.6 196 51.0
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 8.5e-55 217.6 208 52.9
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 1.1e-54 217.2 196 53.1
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.1e-54 217.2 200 54.5
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 1.9e-54 216.5 199 50.3
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 1.9e-54 216.5 196 53.6
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 2.5e-54 216.1 121 76.9
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 5.5e-54 214.9 199 49.7
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 5.5e-54 214.9 121 76.0
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 7.2e-54 214.5 197 52.3
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 7.2e-54 214.5 198 53.5
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 9.4e-54 214.2 196 51.5
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 1.2e-53 213.8 196 49.5
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 1.2e-53 213.8 198 50.5
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 1.6e-53 213.4 203 50.2
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 1.6e-53 213.4 197 51.3
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 2.1e-53 213.0 204 51.0
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 2.7e-53 212.6 190 54.7
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 2.7e-53 212.6 194 53.1
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 2.7e-53 212.6 195 51.8
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 3.6e-53 212.2 195 51.3
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 4.7e-53 211.8 199 49.2
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 4.7e-53 211.8 196 51.5
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 6.1e-53 211.5 118 75.4
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 6.1e-53 211.5 118 75.4
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 8.0e-53 211.1 134 67.9
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 8.0e-53 211.1 134 69.4
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 1.0e-52 210.7 193 51.8
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 1.4e-52 210.3 195 51.8
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 1.8e-52 209.9 155 61.3
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 2.3e-52 209.5 117 77.8
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 3.0e-52 209.1 122 74.6
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 3.0e-52 209.1 122 74.6
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 4.0e-52 208.8 201 50.7
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 5.2e-52 208.4 114 76.3
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 6.8e-52 208.0 201 50.7
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 8.8e-52 207.6 186 53.8
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 1.2e-51 207.2 193 52.3
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 1.2e-51 207.2 148 64.2
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 1.5e-51 206.8 119 73.9
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 2.0e-51 206.5 132 67.4
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 2.6e-51 206.1 198 50.0
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 2.6e-51 206.1 197 51.3
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 3.4e-51 205.7 215 48.8
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 9.8e-51 204.1 204 48.5
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 2.8e-50 202.6 119 71.4
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 3.7e-50 202.2 197 50.8
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 8.3e-50 201.1 116 74.1
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 1.1e-49 200.7 254 42.9
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 1.1e-49 200.7 120 69.2
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 1.8e-49 199.9 193 49.7
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 4.1e-49 198.7 264 41.3
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 3.5e-48 195.7 177 54.8
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 1.0e-47 194.1 170 52.9
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.0e-47 194.1 193 48.2
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 1.1e-46 190.7 140 62.1
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 6.1e-45 184.9 118 67.8
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 1.4e-44 183.7 162 52.5
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 1.2e-43 180.6 115 67.0
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.5e-43 180.3 195 48.2
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 3.4e-43 179.1 116 60.3
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 9.8e-43 177.6 209 43.5
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 3.1e-41 172.6 93 77.4
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 4.1e-41 172.2 122 65.6
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 5.4e-41 171.8 204 46.1
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 4.5e-40 168.7 195 44.6
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 1.0e-39 167.5 200 39.5
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 1.3e-39 167.2 162 50.6
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 6.6e-39 164.9 163 50.3
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 2.8e-37 159.5 257 37.4
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 4.7e-37 158.7 142 52.1
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 1.8e-36 156.8 129 58.9
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 9.8e-35 151.0 93 68.8
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 3.5e-32 142.5 77 76.6
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 5.6e-30 135.2 102 55.9
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 9.5e-30 134.4 163 45.4
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 2.1e-29 133.3 145 47.6
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 3.1e-28 129.4 106 48.1
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 1.5e-27 127.1 87 69.0
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 4.4e-27 125.6 138 47.1
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 8.3e-26 121.3 144 47.2
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 1.4e-25 120.6 63 81.0
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 1.9e-25 120.2 106 50.0
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 4.1e-25 119.0 111 44.1
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 4.1e-25 119.0 135 45.9
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 1.2e-24 117.5 205 35.1
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 1.0e-23 114.4 93 57.0
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 5.0e-23 112.1 96 49.0
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 7.3e-22 108.2 58 75.9
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 9.5e-22 107.8 57 75.4
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 9.5e-22 107.8 106 45.3
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 3.1e-20 102.8 268 28.7
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 3.4e-19 99.4 93 40.9
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 2.9e-18 96.3 104 44.2
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 3.3e-14 82.8 122 40.2
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 2.8e-13 79.7 116 37.9
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 8.1e-13 78.2 49 69.4
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 1.4e-12 77.4 122 32.0
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 7.6e-11 71.6 74 41.9
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 1.1e-09 67.8 40 70.0
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 1.9e-09 67.0 114 35.1
Aqoxy6G02726 Aquilegia oxysepala HOM05D000001 ORTHO05D077907 3.9e-07 59.3 131 32.8
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 6.6e-07 58.5 33 69.7
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 6.6e-07 58.5 33 69.7


User provided reference genes

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