Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 7.3e-147 523.9 262 100.0
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 4.8e-82 308.5 200 77.5
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.5e-80 303.5 196 78.1
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 2.0e-80 303.1 205 75.1
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 2.0e-80 303.1 208 73.6
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 4.5e-80 302.0 201 74.1
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 5.9e-80 301.6 212 71.2
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 7.7e-80 301.2 207 72.0
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 2.9e-79 299.3 198 75.3
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 2.9e-79 299.3 203 75.4
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 3.8e-79 298.9 203 73.4
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 3.8e-79 298.9 201 75.6
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 3.8e-79 298.9 203 73.9
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 3.8e-79 298.9 203 73.9
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 5.0e-79 298.5 235 64.7
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 5.0e-79 298.5 203 71.9
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 6.5e-79 298.1 203 71.9
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 8.5e-79 297.7 201 74.6
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 1.4e-78 297.0 205 74.1
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.9e-78 296.6 203 73.4
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.9e-78 296.6 196 76.0
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 1.9e-78 296.6 201 74.1
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 2.5e-78 296.2 205 72.7
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 2.5e-78 296.2 203 73.4
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 2.5e-78 296.2 203 71.9
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.2e-78 295.8 203 74.4
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 5.5e-78 295.0 199 73.4
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 5.5e-78 295.0 203 72.4
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 7.2e-78 294.7 196 75.5
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 9.4e-78 294.3 207 73.9
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 9.4e-78 294.3 199 73.9
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 9.4e-78 294.3 196 74.5
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 9.4e-78 294.3 201 74.1
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 9.4e-78 294.3 201 74.1
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.6e-77 293.5 208 69.7
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 2.7e-77 292.7 198 71.7
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 2.7e-77 292.7 203 71.9
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 3.6e-77 292.4 205 73.2
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 4.7e-77 292.0 203 71.9
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 4.7e-77 292.0 210 71.4
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 6.1e-77 291.6 197 76.1
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 6.1e-77 291.6 196 74.5
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 6.1e-77 291.6 201 71.1
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 6.1e-77 291.6 218 67.9
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 1.4e-76 290.4 197 75.6
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.8e-76 290.0 205 69.8
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.8e-76 290.0 205 70.7
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 2.3e-76 289.7 203 70.4
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 2.3e-76 289.7 195 73.3
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 2.3e-76 289.7 202 71.8
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 3.0e-76 289.3 203 69.5
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 3.0e-76 289.3 196 73.5
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 3.0e-76 289.3 202 70.3
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 3.9e-76 288.9 201 72.6
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 6.7e-76 288.1 206 71.4
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 6.7e-76 288.1 205 71.2
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 8.8e-76 287.7 216 69.4
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 8.8e-76 287.7 200 71.5
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 8.8e-76 287.7 211 70.6
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 1.5e-75 287.0 198 74.2
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.5e-75 287.0 203 70.4
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.5e-75 287.0 203 70.4
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 1.5e-75 287.0 200 71.5
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 1.5e-75 287.0 203 71.4
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 2.6e-75 286.2 200 70.5
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 2.6e-75 286.2 204 67.6
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 3.3e-75 285.8 200 70.5
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 3.3e-75 285.8 200 70.0
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 4.4e-75 285.4 200 71.0
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 4.4e-75 285.4 200 71.0
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 4.4e-75 285.4 200 71.0
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 4.4e-75 285.4 200 71.0
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 4.4e-75 285.4 200 71.0
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 4.4e-75 285.4 198 71.2
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 5.7e-75 285.0 200 70.0
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 5.7e-75 285.0 200 70.0
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 5.7e-75 285.0 196 72.4
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 5.7e-75 285.0 204 68.1
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 5.7e-75 285.0 205 72.2
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 7.4e-75 284.6 200 70.5
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 7.4e-75 284.6 199 69.8
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 7.4e-75 284.6 200 70.5
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 7.4e-75 284.6 199 72.4
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 1.3e-74 283.9 203 68.0
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.8e-74 282.7 198 71.7
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.7e-74 282.3 227 66.5
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 3.7e-74 282.3 204 70.6
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 3.7e-74 282.3 204 70.6
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 3.7e-74 282.3 204 70.6
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 4.8e-74 282.0 202 70.8
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 8.2e-74 281.2 202 70.8
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 1.1e-73 280.8 192 71.9
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 1.1e-73 280.8 206 69.4
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.4e-73 280.4 200 70.0
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.8e-73 280.0 197 71.1
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 2.4e-73 279.6 200 71.5
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.4e-73 279.6 205 70.2
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 3.1e-73 279.3 205 69.8
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 4.1e-73 278.9 206 69.4
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 4.1e-73 278.9 200 69.5
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 4.1e-73 278.9 209 65.6
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 5.3e-73 278.5 198 70.7
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 5.3e-73 278.5 198 70.7
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 7.0e-73 278.1 201 70.6
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 7.0e-73 278.1 201 70.6
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 7.0e-73 278.1 204 69.6
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 9.1e-73 277.7 207 67.6
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 9.1e-73 277.7 197 70.6
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 9.1e-73 277.7 202 70.8
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.6e-72 276.9 196 70.4
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 1.6e-72 276.9 200 70.5
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 2.0e-72 276.6 206 68.4
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 2.0e-72 276.6 207 67.6
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 3.5e-72 275.8 206 68.9
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 5.9e-72 275.0 204 70.1
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 5.0e-71 271.9 195 68.7
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 5.0e-71 271.9 218 65.1
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 8.5e-71 271.2 206 66.0
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 1.1e-70 270.8 196 67.9
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 1.5e-70 270.4 201 67.7
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 3.2e-70 269.2 228 62.7
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 3.2e-70 269.2 195 67.7
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 4.2e-70 268.9 200 65.0
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 5.5e-70 268.5 194 68.0
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 9.4e-70 267.7 196 68.9
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 1.6e-69 266.9 213 64.3
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 2.1e-69 266.5 200 68.5
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 2.7e-69 266.2 200 68.0
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 8.0e-69 264.6 196 67.9
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.0e-68 264.2 205 68.3
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 1.8e-68 263.5 182 73.1
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 2.6e-67 259.6 196 65.8
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 2.8e-66 256.1 202 63.4
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 2.8e-66 256.1 202 63.4
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 6.3e-66 255.0 202 63.4
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 6.3e-66 255.0 202 63.4
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 6.3e-66 255.0 202 63.4
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 6.3e-66 255.0 193 65.3
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 5.3e-65 251.9 173 69.9
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 7.0e-65 251.5 202 62.9
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 7.7e-64 248.1 159 79.2
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 1.9e-62 243.4 204 66.2
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 1.2e-59 234.2 195 61.0
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 1.0e-52 211.1 224 53.6
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 1.5e-51 207.2 136 75.7
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 4.4e-51 205.7 136 75.0
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 6.3e-50 201.8 204 52.0
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 2.0e-48 196.8 222 48.6
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 2.0e-48 196.8 198 54.0
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 1.7e-47 193.7 132 72.0
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 5.0e-47 192.2 209 51.7
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.8e-44 183.7 253 46.6
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 1.7e-39 167.2 204 47.1
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 3.9e-39 166.0 204 46.1
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 4.0e-36 156.0 150 50.7
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 4.1e-33 146.0 181 49.7
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 9.5e-30 134.8 131 57.3
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.3e-22 108.6 75 68.0
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 1.5e-14 84.3 61 68.9
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 5.6e-14 82.4 74 56.8
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 1.3e-13 81.3 89 47.2
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 3.4e-11 73.2 49 67.3
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 7.8e-08 62.0 71 47.9
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 3.0e-07 60.1 39 71.8
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 4.3e-06 56.2 44 63.6
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 7.3e-06 55.5 54 50.0


User provided reference genes

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