Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 3.5e-110 401.7 218 100.0
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.1e-30 136.7 222 49.5
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.5e-23 113.2 244 41.8
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 2.1e-22 110.2 167 38.3
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 1.0e-21 107.8 167 37.7
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 1.1e-20 104.4 214 34.1
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.1e-20 104.4 153 39.2
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 1.5e-20 104.0 158 53.2
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 2.6e-20 103.2 217 32.7
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.6e-20 103.2 153 37.3
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 3.3e-20 102.8 211 37.4
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 3.3e-20 102.8 180 36.7
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 4.4e-20 102.4 228 38.2
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 5.7e-20 102.1 213 43.7
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 5.7e-20 102.1 206 40.3
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.3e-19 100.9 214 37.9
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 1.3e-19 100.9 223 32.7
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.7e-19 100.5 163 40.5
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 1.7e-19 100.5 212 42.5
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 2.2e-19 100.1 163 46.0
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.2e-19 100.1 222 37.8
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 2.8e-19 99.8 214 33.6
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.8e-19 99.8 228 39.9
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 2.8e-19 99.8 214 32.2
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 3.7e-19 99.4 219 32.0
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 6.3e-19 98.6 214 37.4
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 8.2e-19 98.2 153 46.4
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.1e-18 97.8 174 44.8
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 1.1e-18 97.8 223 36.3
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 1.4e-18 97.4 219 41.1
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 1.4e-18 97.4 172 41.9
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 1.8e-18 97.1 155 40.0
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 1.8e-18 97.1 217 39.2
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 3.1e-18 96.3 219 37.9
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 4.1e-18 95.9 223 33.2
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 4.1e-18 95.9 219 32.4
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 5.3e-18 95.5 234 37.2
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 5.3e-18 95.5 230 38.7
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 5.3e-18 95.5 189 36.5
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 5.3e-18 95.5 225 33.3
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 7.0e-18 95.1 180 34.4
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 7.0e-18 95.1 219 32.4
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 7.0e-18 95.1 210 31.9
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.6e-17 94.0 203 33.5
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 2.0e-17 93.6 231 39.4
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 2.0e-17 93.6 218 38.1
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 2.6e-17 93.2 210 40.0
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 3.5e-17 92.8 230 32.2
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 4.5e-17 92.4 218 33.0
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 4.5e-17 92.4 209 33.0
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 5.9e-17 92.0 208 37.5
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 5.9e-17 92.0 208 37.5
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 5.9e-17 92.0 153 37.3
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 5.9e-17 92.0 214 40.7
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 1.0e-16 91.3 155 35.5
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 1.0e-16 91.3 222 31.5
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.0e-16 91.3 215 30.7
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 1.7e-16 90.5 214 32.7
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 1.7e-16 90.5 219 41.1
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.7e-16 90.5 155 35.5
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 2.9e-16 89.7 216 37.0
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 3.8e-16 89.4 221 31.2
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 3.8e-16 89.4 219 30.6
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 5.0e-16 89.0 153 48.4
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 5.0e-16 89.0 153 44.4
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 5.0e-16 89.0 154 47.4
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 5.0e-16 89.0 156 36.5
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 6.5e-16 88.6 218 31.7
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 6.5e-16 88.6 219 32.9
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 6.5e-16 88.6 219 32.9
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 6.5e-16 88.6 214 39.3
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.1e-15 87.8 153 43.1
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 1.1e-15 87.8 215 40.5
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 1.1e-15 87.8 215 40.5
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.1e-15 87.8 217 29.0
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 1.5e-15 87.4 161 39.1
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 1.5e-15 87.4 216 30.1
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 1.5e-15 87.4 211 30.3
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 1.5e-15 87.4 210 39.0
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 1.9e-15 87.0 225 32.9
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.9e-15 87.0 166 32.5
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 3.2e-15 86.3 153 47.7
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 4.2e-15 85.9 153 48.4
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 4.2e-15 85.9 165 34.5
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 5.5e-15 85.5 222 28.8
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 5.5e-15 85.5 162 43.8
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 7.2e-15 85.1 217 40.1
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 7.2e-15 85.1 215 31.6
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 7.2e-15 85.1 283 34.6
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 7.2e-15 85.1 169 37.3
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 7.2e-15 85.1 153 34.0
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 7.2e-15 85.1 169 37.3
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 9.4e-15 84.7 212 31.1
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 1.2e-14 84.3 221 33.5
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 1.2e-14 84.3 214 34.1
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.2e-14 84.3 217 40.1
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.2e-14 84.3 221 39.4
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.2e-14 84.3 217 40.1
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 1.2e-14 84.3 153 34.6
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.6e-14 84.0 153 47.1
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 2.1e-14 83.6 214 30.8
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 2.1e-14 83.6 219 28.8
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 2.1e-14 83.6 219 30.1
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 2.1e-14 83.6 219 30.1
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 2.1e-14 83.6 214 31.8
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 2.7e-14 83.2 211 29.4
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 2.7e-14 83.2 153 44.4
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 2.7e-14 83.2 148 34.5
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 3.6e-14 82.8 219 29.7
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 3.6e-14 82.8 212 35.8
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.6e-14 82.8 154 35.7
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 4.7e-14 82.4 176 41.5
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 6.1e-14 82.0 219 29.7
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 8.0e-14 81.6 210 31.0
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 8.0e-14 81.6 175 42.9
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.4e-13 80.9 165 32.7
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 1.8e-13 80.5 220 27.7
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 1.8e-13 80.5 157 35.7
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 2.3e-13 80.1 224 28.6
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 2.3e-13 80.1 224 28.6
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.3e-13 80.1 210 29.0
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 3.0e-13 79.7 231 35.1
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 6.7e-13 78.6 153 34.6
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 8.8e-13 78.2 153 39.9
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 8.8e-13 78.2 258 34.9
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 8.8e-13 78.2 203 34.5
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 8.8e-13 78.2 229 30.1
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 8.8e-13 78.2 152 34.9
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 1.5e-12 77.4 216 39.4
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 1.5e-12 77.4 153 43.1
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 2.0e-12 77.0 227 29.1
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 2.0e-12 77.0 229 38.4
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 4.4e-12 75.9 218 30.7
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 4.4e-12 75.9 214 32.7
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 7.5e-12 75.1 184 38.6
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-11 74.3 220 31.4
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 2.2e-11 73.6 216 32.9
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 2.2e-11 73.6 216 32.9
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 2.8e-11 73.2 153 34.0
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 3.7e-11 72.8 154 36.4
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 3.7e-11 72.8 214 29.0
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 6.3e-11 72.0 210 31.0
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 8.2e-11 71.6 167 33.5
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 8.2e-11 71.6 167 33.5
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 8.2e-11 71.6 167 33.5
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 2.4e-10 70.1 159 32.1
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 3.1e-10 69.7 164 40.2
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 4.1e-10 69.3 153 32.0
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 5.3e-10 68.9 214 28.0
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 7.0e-10 68.6 122 36.1
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 1.6e-09 67.4 233 29.2
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 3.5e-09 66.2 161 30.4
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 1.0e-08 64.7 166 31.9
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 2.9e-08 63.2 201 28.9
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 3.8e-08 62.8 163 30.7
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-07 61.2 201 28.4
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 2.5e-07 60.1 153 29.4
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 3.2e-07 59.7 229 31.0
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 7.2e-07 58.5 126 31.0
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 1.2e-06 57.8 51 49.0
Pp3c16_12300 Physcomitrium patens HOM05D013579 ORTHO05D001508 1.6e-06 57.4 51 49.0
Pp3c6_24870 Physcomitrium patens HOM05D013579 ORTHO05D015305 2.1e-06 57.0 56 51.8


User provided reference genes

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