Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 6.2e-213 743.8 360 100.0
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 5.6e-81 305.4 384 45.8
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.1e-76 291.2 378 45.5
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.4e-76 290.8 362 43.6
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 2.7e-75 286.6 369 44.7
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.3e-72 277.7 297 48.1
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 2.1e-72 276.9 376 44.9
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 4.8e-72 275.8 287 51.6
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 1.4e-71 274.2 285 48.4
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 1.8e-71 273.9 382 43.2
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.2e-70 271.2 372 45.2
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 1.5e-70 270.8 369 40.9
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.5e-70 270.8 366 44.8
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 1.5e-70 270.8 360 42.2
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.0e-70 270.4 372 43.3
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 3.4e-70 269.6 375 42.7
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 9.9e-70 268.1 367 43.6
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 1.7e-69 267.3 370 42.7
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.7e-69 267.3 370 42.7
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 2.2e-69 266.9 383 43.6
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 6.4e-69 265.4 315 49.5
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 1.1e-68 264.6 359 41.8
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 1.1e-68 264.6 298 46.6
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 1.4e-68 264.2 366 42.9
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 1.4e-68 264.2 297 46.5
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 3.2e-68 263.1 380 42.4
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 7.1e-68 261.9 377 42.4
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 7.1e-68 261.9 298 46.3
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 9.3e-68 261.5 370 42.7
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.1e-67 260.4 367 42.2
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 2.1e-67 260.4 367 42.5
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 2.7e-67 260.0 311 45.3
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 4.6e-67 259.2 379 41.4
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 4.6e-67 259.2 362 44.2
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 7.9e-67 258.5 363 40.5
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.0e-66 258.1 372 40.1
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.0e-66 258.1 372 40.1
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 1.3e-66 257.7 371 42.3
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.7e-66 257.3 294 46.9
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.3e-66 256.9 363 42.1
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 3.9e-66 256.1 369 40.9
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 3.9e-66 256.1 370 43.0
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 5.1e-66 255.8 368 40.2
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 5.1e-66 255.8 359 42.1
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 5.1e-66 255.8 367 42.2
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 8.7e-66 255.0 383 38.6
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 8.7e-66 255.0 286 49.0
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.1e-65 254.6 287 48.4
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 1.5e-65 254.2 371 42.6
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 1.5e-65 254.2 367 41.4
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.9e-65 253.8 369 39.3
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.9e-65 253.8 373 41.6
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 2.5e-65 253.4 363 40.5
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 3.3e-65 253.1 370 43.0
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 3.3e-65 253.1 367 40.6
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 3.3e-65 253.1 374 41.2
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 4.3e-65 252.7 279 48.0
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 4.3e-65 252.7 298 46.0
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 4.3e-65 252.7 360 41.7
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 5.6e-65 252.3 366 41.0
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 7.3e-65 251.9 370 41.9
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 9.6e-65 251.5 365 41.1
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 9.6e-65 251.5 283 48.8
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 1.3e-64 251.1 370 40.8
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 1.3e-64 251.1 361 41.8
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.3e-64 251.1 377 41.4
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 2.1e-64 250.4 279 48.0
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 2.1e-64 250.4 377 41.1
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.1e-64 250.4 367 40.3
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 2.1e-64 250.4 378 42.3
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.8e-64 250.0 378 42.1
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 3.6e-64 249.6 361 41.6
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 6.2e-64 248.8 327 42.5
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 6.2e-64 248.8 362 42.3
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 8.1e-64 248.4 367 43.6
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 8.1e-64 248.4 365 40.8
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 2.4e-63 246.9 380 42.1
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 2.4e-63 246.9 364 41.2
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 5.3e-63 245.7 363 40.2
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 6.9e-63 245.4 370 42.2
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 9.0e-63 245.0 365 39.2
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 9.0e-63 245.0 277 45.5
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 1.2e-62 244.6 384 41.4
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 1.2e-62 244.6 384 41.4
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 1.5e-62 244.2 360 41.1
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 1.5e-62 244.2 366 39.6
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.5e-62 244.2 279 47.3
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 1.5e-62 244.2 368 41.3
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 2.0e-62 243.8 358 40.5
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 2.0e-62 243.8 277 45.5
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 2.6e-62 243.4 377 41.9
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 2.6e-62 243.4 290 46.2
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 4.5e-62 242.7 355 41.1
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 4.5e-62 242.7 380 39.7
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 5.8e-62 242.3 359 40.4
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 7.6e-62 241.9 293 45.7
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 7.6e-62 241.9 276 48.9
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 9.9e-62 241.5 361 41.3
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 9.9e-62 241.5 310 43.5
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 9.9e-62 241.5 356 42.1
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 1.3e-61 241.1 355 40.6
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 1.3e-61 241.1 283 45.9
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.7e-61 240.7 374 39.0
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 3.8e-61 239.6 357 40.1
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.4e-60 236.9 363 41.0
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 3.2e-60 236.5 355 38.6
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 7.1e-60 235.3 276 46.4
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 7.1e-60 235.3 356 39.3
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 9.3e-60 235.0 291 44.7
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 1.2e-59 234.6 358 39.1
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.2e-59 234.6 276 47.8
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 2.7e-59 233.4 298 44.3
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.5e-59 233.0 409 38.4
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 4.6e-59 232.6 338 40.8
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 4.6e-59 232.6 361 39.9
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 7.9e-59 231.9 350 37.1
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.8e-58 230.7 408 37.7
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.8e-58 230.7 408 37.7
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 1.8e-58 230.7 279 47.0
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 3.0e-58 229.9 357 40.3
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 3.9e-58 229.6 365 43.3
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 5.1e-58 229.2 269 48.3
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 6.7e-58 228.8 312 40.1
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 8.7e-58 228.4 288 47.2
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 1.5e-57 227.6 338 41.4
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 1.9e-57 227.3 268 42.9
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 4.3e-57 226.1 352 38.9
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 2.1e-56 223.8 352 38.6
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.8e-55 220.7 241 49.0
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 1.8e-55 220.7 324 40.4
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 9.0e-55 218.4 278 45.0
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 5.8e-54 215.7 315 39.7
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 3.8e-53 213.0 241 47.7
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 1.6e-51 207.6 237 44.7
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 4.6e-51 206.1 375 36.5
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 7.4e-49 198.7 327 36.7
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 7.4e-49 198.7 327 40.1
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 1.4e-47 194.5 281 41.6
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 2.4e-47 193.7 230 44.8
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 5.3e-47 192.6 321 35.2
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 6.9e-47 192.2 323 40.6
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 3.4e-46 189.9 225 46.7
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 5.9e-46 189.1 263 44.1
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 3.0e-42 176.8 312 35.3
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 3.3e-41 173.3 367 33.5
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 4.8e-40 169.5 272 39.0
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 2.6e-38 163.7 312 37.2
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 5.9e-38 162.5 259 35.9
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.2e-37 160.6 356 34.8
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 9.4e-36 155.2 145 49.0
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 3.1e-31 140.2 199 42.7
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 4.1e-31 139.8 448 25.9
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 1.8e-26 124.4 158 41.1
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 3.0e-26 123.6 205 38.0
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 8.8e-26 122.1 120 43.3
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 8.2e-24 115.5 165 44.2
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 3.5e-22 110.2 173 39.9
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 5.0e-21 106.3 228 32.9
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 3.6e-19 100.1 186 32.8
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 1.5e-17 94.7 116 37.9
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 3.3e-17 93.6 96 46.9
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 7.5e-17 92.4 148 38.5
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 3.7e-16 90.1 81 46.9
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 1.4e-15 88.2 114 39.5
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 2.4e-15 87.4 109 38.5
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 1.6e-14 84.7 298 26.8
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 2.9e-13 80.5 168 31.0
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.6e-11 74.7 69 47.8
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 2.1e-11 74.3 78 47.4
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 2.7e-11 73.9 61 50.8
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 3.6e-11 73.6 215 29.8
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.3e-10 70.9 111 41.4
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 2.7e-06 57.4 115 30.4


User provided reference genes

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