Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_022771 Vanilla planifolia HOM05D008006 ORTHO05D010181 3.4e-175 618.2 313 100.0
TAR376G0197 Trochodendron aralioides HOM05D008006 ORTHO05D010181 3.7e-81 305.8 309 55.3
Prupe.7G252900 Prunus persica HOM05D008006 ORTHO05D010181 7.3e-77 291.6 277 56.0
CDE07G0801 Ceratophyllum demersum HOM05D008006 ORTHO05D010181 2.8e-76 289.7 293 51.2
MD15G1157700 Malus domestica HOM05D008006 ORTHO05D010181 2.8e-76 289.7 270 55.6
DCAR_005377 Daucus carota HOM05D008006 ORTHO05D010181 3.6e-76 289.3 283 53.0
PGSC0003DMG401009429 Solanum tuberosum HOM05D008006 ORTHO05D010181 4.7e-76 288.9 291 54.3
MBI04_g23901_MAGBIO Magnolia biondii HOM05D008006 ORTHO05D010181 1.8e-75 287.0 272 52.9
Sopen02g017480 Solanum pennellii HOM05D008006 ORTHO05D010181 4.0e-75 285.8 298 52.7
Zm00001eb102080 Zea mays HOM05D008006 ORTHO05D010181 4.0e-75 285.8 281 55.9
RcHm_v2.0_Chr2g0086431 Rosa chinensis HOM05D008006 ORTHO05D010181 6.8e-75 285.0 270 54.8
Cc07_g12390 Coffea canephora HOM05D008006 ORTHO05D010181 2.0e-74 283.5 303 50.8
Peaxi162Scf00981g00002 Petunia axillaris HOM05D008006 ORTHO05D010181 2.0e-74 283.5 298 51.0
CAN.G883.7 Capsicum annuum HOM05D008006 ORTHO05D010181 8.3e-73 278.1 283 53.0
CiPaw.15G179000 Carya illinoinensis HOM05D008006 ORTHO05D010181 1.1e-72 277.7 294 53.7
CsaV3_1G028580 Cucumis sativus L. HOM05D008006 ORTHO05D010181 1.1e-72 277.7 291 52.9
Hma1.2p1_0085F.1_g044170 Hydrangea macrophylla HOM05D008006 ORTHO05D010181 1.1e-72 277.7 296 53.0
MELO3C010256.2 Cucumis melo HOM05D008006 ORTHO05D010181 3.2e-72 276.2 291 52.9
Lsat_1_v5_gn_8_113701 Lactuca sativa HOM05D008006 ORTHO05D010181 3.2e-72 276.2 293 50.2
Nitab4.5_0000443g0190 Nicotiana tabacum HOM05D008006 ORTHO05D010181 4.1e-72 275.8 289 51.9
PGR142G2664 Punica granatum HOM05D008006 ORTHO05D010181 5.4e-72 275.4 307 51.5
Duzib187G1563 Durio zibethinus HOM05D008006 ORTHO05D010181 7.0e-72 275.0 275 52.4
CANSAT11G1793 Cannabis sativa HOM05D008006 ORTHO05D010181 1.2e-71 274.2 302 51.0
Cpa.g.sc46.96 Carica papaya HOM05D008006 ORTHO05D010181 1.6e-71 273.9 305 47.5
FAN23G1450 Fragaria x ananassa HOM05D008006 ORTHO05D010181 2.7e-71 273.1 270 54.4
Medtr1g052525 Medicago truncatula HOM05D008006 ORTHO05D010181 2.7e-71 273.1 282 50.7
Nitab4.5_0000973g0020 Nicotiana tabacum HOM05D008006 ORTHO05D010181 3.5e-71 272.7 289 51.9
FAN28G2644 Fragaria x ananassa HOM05D008006 ORTHO05D010181 6.0e-71 271.9 270 54.4
ClCG06G012090 Citrullus lanatus HOM05D008006 ORTHO05D010181 7.8e-71 271.6 296 50.7
Dinv19107 Davidia involucrata HOM05D008006 ORTHO05D007530 1.0e-70 271.2 273 54.6
FvH4_1g01510 Fragaria vesca HOM05D008006 ORTHO05D010181 6.6e-70 268.5 270 53.7
Sed0023235 Sechium edule HOM05D008006 ORTHO05D010181 1.1e-69 267.7 299 50.2
Oeu023348.1 Olea europaea HOM05D008006 ORTHO05D010181 1.5e-69 267.3 283 52.7
Phvul.009G208600 Phaseolus vulgaris HOM05D008006 ORTHO05D010181 1.5e-69 267.3 280 51.1
Cfa020870 Carpinus fangiana HOM05D008006 ORTHO05D010181 1.2e-68 264.2 298 52.3
Haze_19299 Corylus avellana HOM05D008006 ORTHO05D010181 1.6e-68 263.8 294 52.7
Sabra18G0096000 Salix brachista HOM05D008006 ORTHO05D010181 1.6e-68 263.8 294 49.0
COL.COLO4_22070 Corchorus olitorius HOM05D008006 ORTHO05D010181 2.8e-68 263.1 293 49.1
THA.LOC104827422 Tarenaya hassleriana HOM05D008006 ORTHO05D010181 3.6e-68 262.7 297 47.1
VMungo1309G1328 Vigna mungo HOM05D008006 ORTHO05D010181 3.6e-68 262.7 275 50.5
SEGI_07410 Sequoiadendron giganteum HOM05D008006 ORTHO05D010181 6.2e-68 261.9 285 48.8
Thecc.09G037000 Theobroma cacao HOM05D008006 ORTHO05D010181 6.2e-68 261.9 274 51.8
MSTRG.3655 Avicennia marina HOM05D008006 ORTHO05D010181 2.3e-67 260.0 279 52.7
QL02p091617 Quercus lobata HOM05D008006 ORTHO05D010181 4.0e-67 259.2 296 49.0
Ah.07g202950 Amaranthus hybridus HOM05D008006 ORTHO05D010181 6.8e-67 258.5 281 50.5
SGA_v2.0_scaffold229G43287 Striga asiatica HOM05D008006 ORTHO05D010181 6.8e-67 258.5 293 49.8
unitig_0.g2635 Utricularia gibba HOM05D008006 ORTHO05D010181 1.2e-66 257.7 287 50.9
Potri.018G112900 Populus trichocarpa HOM05D008006 ORTHO05D010181 2.6e-66 256.5 273 50.2
Sc03g0006000 Simmondsia chinensis HOM05D008006 ORTHO05D010181 2.6e-66 256.5 283 52.3
Migut.K01160 Erythranthe guttata HOM05D008006 ORTHO05D010181 3.4e-66 256.1 278 50.4
Gohir.A06G096100 Gossypium hirsutum HOM05D008006 ORTHO05D010181 3.4e-66 256.1 276 49.3
Aqoxy6G02620 Aquilegia oxysepala HOM05D008006 ORTHO05D010181 5.8e-66 255.4 308 46.8
Gorai.010G110900 Gossypium raimondii HOM05D008006 ORTHO05D010181 3.7e-65 252.7 276 48.9
Manes.14G140100 Manihot esculenta HOM05D008006 ORTHO05D010181 9.2e-64 248.1 293 47.8
ATR0605G334 Amborella trichopoda HOM05D008006 ORTHO05D010181 1.0e-62 244.6 284 46.8
EL10Ac6g14724 Beta vulgaris HOM05D008006 ORTHO05D010181 1.0e-62 244.6 282 50.4
AUR62016258 Chenopodium quinoa HOM05D008006 ORTHO05D010181 5.1e-62 242.3 271 51.7
QL02p091673 Quercus lobata HOM05D008006 ORTHO05D010181 5.6e-61 238.8 283 48.1
CSS0020571 Camellia sinensis var. sinensis HOM05D008006 ORTHO05D010181 7.6e-58 228.4 321 44.9
Mapoly0054s0065 Marchantia polymorpha HOM05D008006 ORTHO05D010181 2.1e-55 220.3 275 48.4
SalBow5G3372 Salvia bowleyana HOM05D008006 ORTHO05D010181 8.7e-54 214.9 284 45.4
HanXRQChr15g0486431 Helianthus annuus HOM05D008006 ORTHO05D010181 1.6e-47 194.1 163 57.1
Actinidia28771 Actinidia chinensis HOM05D008006 ORTHO05D010181 1.7e-46 190.7 201 51.2
Gohir.D06G096200 Gossypium hirsutum HOM05D008006 ORTHO05D010181 1.4e-43 181.0 214 46.3
AUR62003323 Chenopodium quinoa HOM05D002832 ORTHO05D007530 1.2e-39 167.9 137 58.4
SMO364G0826 Selaginella moellendorffii HOM05D008006 ORTHO05D010181 3.4e-34 149.8 209 46.4
Lalb_Chr11g0072821 Lupinus albus HOM05D008006 ORTHO05D010181 2.7e-31 140.2 116 61.2
CBR_g4365 Chara braunii HOM05D008006 ORTHO05D010181 2.5e-29 133.7 313 31.3
Solyc02g068350.1 Solanum lycopersicum HOM05D008006 ORTHO05D010181 2.6e-26 123.6 158 46.8
Cre16.g675000 Chlamydomonas reinhardtii HOM05D008006 ORTHO05D010181 6.5e-25 119.0 325 35.7
AUR62043755 Chenopodium quinoa HOM05D008006 ORTHO05D010181 2.5e-21 107.1 82 62.2
FAN26G1902 Fragaria x ananassa HOM05D008006 ORTHO05D010181 5.1e-14 82.8 97 48.5
Hma1.2p1_2924F.1_g330380 Hydrangea macrophylla HOM05D008006 ORTHO05D010181 1.3e-12 78.2 57 59.6


User provided reference genes

Program Settings