Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_022688 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.4e-221 772.7 401 100.0
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 5.5e-77 292.4 396 44.9
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 7.7e-47 192.2 401 34.4
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 1.2e-42 178.3 402 33.6
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 2.0e-39 167.5 389 34.4
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 2.9e-38 163.7 363 35.0
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 5.0e-38 162.9 355 34.9
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 8.5e-38 162.2 389 33.2
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 1.1e-37 161.8 356 36.2
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 1.5e-37 161.4 356 32.6
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 5.5e-37 159.5 357 33.9
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 1.2e-36 158.3 351 32.5
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 1.6e-36 157.9 357 34.2
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 3.6e-36 156.8 386 32.4
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 1.8e-35 154.5 354 32.8
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 2.3e-35 154.1 351 33.0
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 5.2e-35 152.9 397 31.7
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.2e-34 151.8 381 32.0
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 1.5e-34 151.4 359 33.1
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 4.4e-34 149.8 351 31.9
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 7.5e-34 149.1 354 31.1
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 2.2e-33 147.5 358 32.1
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 2.8e-33 147.1 352 32.4
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 3.7e-33 146.7 383 30.5
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 6.3e-33 146.0 368 32.6
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 1.1e-32 145.2 387 31.0
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 3.1e-32 143.7 367 29.7
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 3.1e-32 143.7 297 35.0
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 5.4e-32 142.9 356 31.5
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 5.4e-32 142.9 351 33.6
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 2.7e-31 140.6 356 31.7
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 5.9e-31 139.4 349 33.2
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 1.3e-30 138.3 353 32.6
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 1.3e-30 138.3 371 31.8
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 1.3e-30 138.3 399 30.6
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.7e-30 137.9 399 30.6
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.7e-30 137.9 353 32.0
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 2.9e-30 137.1 371 32.1
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.9e-30 137.1 400 31.8
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 3.8e-30 136.7 353 31.7
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 3.8e-30 136.7 399 30.6
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 8.6e-30 135.6 410 32.0
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 1.1e-29 135.2 377 33.2
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.9e-29 134.4 362 32.6
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 2.5e-29 134.0 360 33.6
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 4.2e-29 133.3 355 33.0
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 4.2e-29 133.3 363 31.7
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 4.2e-29 133.3 353 31.7
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 7.2e-29 132.5 351 31.1
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 7.2e-29 132.5 359 30.9
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 7.2e-29 132.5 362 32.6
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 1.2e-28 131.7 354 31.4
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.6e-28 131.3 357 32.2
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 2.8e-28 130.6 410 31.2
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 3.6e-28 130.2 363 32.8
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 3.6e-28 130.2 363 32.8
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 3.6e-28 130.2 335 31.0
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 3.6e-28 130.2 335 32.5
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 8.0e-28 129.0 391 30.2
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 8.0e-28 129.0 410 29.8
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 8.0e-28 129.0 361 29.9
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 8.8e-27 125.6 354 29.1
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 1.2e-26 125.2 352 31.2
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 1.5e-26 124.8 396 32.1
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 9.8e-26 122.1 349 30.1
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 1.3e-25 121.7 352 30.1
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 2.2e-25 120.9 392 29.6
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 2.8e-25 120.6 355 29.3
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 3.7e-25 120.2 370 28.9
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 4.9e-25 119.8 351 30.8
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 8.3e-25 119.0 344 30.5
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 1.1e-24 118.6 352 31.5
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 1.4e-24 118.2 402 31.3
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 4.1e-24 116.7 388 30.9
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 7.0e-24 115.9 356 29.2
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 1.2e-23 115.2 353 30.9
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 1.6e-23 114.8 370 29.5
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.6e-23 114.8 353 30.9
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 2.0e-23 114.4 366 29.5
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 7.8e-23 112.5 396 29.3
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 1.0e-22 112.1 357 32.2
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 1.0e-22 112.1 385 29.4
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 6.6e-22 109.4 404 28.0
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 8.6e-22 109.0 355 28.5
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 8.6e-22 109.0 405 28.9
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 8.6e-22 109.0 359 31.2
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 1.5e-21 108.2 200 37.0
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 3.3e-21 107.1 330 31.2
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 1.2e-20 105.1 315 29.2
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 1.6e-20 104.8 353 30.0
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 2.1e-20 104.4 358 29.1
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 1.0e-19 102.1 350 30.0
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 1.8e-19 101.3 276 31.9
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 1.8e-19 101.3 315 29.2
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 2.3e-19 100.9 402 27.6
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 5.2e-19 99.8 386 30.6
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 1.5e-18 98.2 338 28.1
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 7.5e-18 95.9 367 27.0
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 1.7e-17 94.7 417 28.3
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 2.2e-17 94.4 364 28.6
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 2.9e-17 94.0 324 28.7
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 8.3e-17 92.4 377 27.6
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 8.3e-17 92.4 266 30.1
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 1.8e-16 91.3 289 28.0
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 4.1e-16 90.1 262 32.1
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 7.8e-15 85.9 345 28.7
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.7e-14 84.7 414 27.1
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.1e-13 82.0 351 26.2
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 1.9e-13 81.3 351 26.2
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 4.3e-13 80.1 344 27.3
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 7.3e-13 79.3 347 29.4
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 1.6e-12 78.2 343 27.4
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 2.3e-11 74.3 282 29.1
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 1.2e-10 72.0 265 26.4
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 2.0e-10 71.2 226 30.5
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 1.7e-09 68.2 281 27.8
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 1.1e-08 65.5 293 27.0
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 1.1e-08 65.5 279 30.1
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 2.4e-08 64.3 275 28.4
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 4.1e-08 63.5 358 26.3
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 5.4e-08 63.2 283 25.1
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 9.2e-08 62.4 109 39.4
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 1.2e-07 62.0 386 25.1
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 1.3e-06 58.5 302 24.5
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 1.3e-06 58.5 302 24.5
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 1.3e-06 58.5 408 23.3
CDE05G1993 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 2.3e-06 57.8 249 26.9
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 5.0e-06 56.6 352 25.3
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 5.0e-06 56.6 352 25.3
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 6.6e-06 56.2 306 25.2


User provided reference genes

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