Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_022608 Vanilla planifolia HOM05D000300 ORTHO05D430488 4.8e-31 137.1 66 100.0
HPP92_022707 Vanilla planifolia HOM05D000300 ORTHO05D008589 5.9e-13 77.0 39 94.9
Aqoxy3G01101 Aquilegia oxysepala HOM05D000300 ORTHO05D008589 1.3e-07 59.3 45 57.8
CDE01G0474 Ceratophyllum demersum HOM05D000300 ORTHO05D008589 1.3e-07 59.3 50 58.0
CDE02G1537 Ceratophyllum demersum HOM05D000300 ORTHO05D008589 1.3e-07 59.3 50 58.0
vmacro16211 Vaccinium macrocarpon HOM05D000300 ORTHO05D008589 1.3e-07 59.3 39 66.7
CAN.G143.57 Capsicum annuum HOM05D000300 ORTHO05D008589 1.7e-07 58.9 40 67.5
FAN17G1713 Fragaria x ananassa HOM05D000300 ORTHO05D008589 1.7e-07 58.9 39 74.4
arahy.Tifrunner.gnm1.ann1.01S097 Arachis hypogaea HOM05D000300 ORTHO05D008589 3.7e-07 57.8 45 60.0
FvH4_4g12450 Fragaria vesca HOM05D000300 ORTHO05D008589 3.7e-07 57.8 39 71.8
FAN07G0403 Fragaria x ananassa HOM05D000300 ORTHO05D008589 3.7e-07 57.8 39 71.8
FAN12G0647 Fragaria x ananassa HOM05D000300 ORTHO05D008589 3.7e-07 57.8 39 71.8
FAN22G1217 Fragaria x ananassa HOM05D000300 ORTHO05D008589 3.7e-07 57.8 39 71.8
Rhsim12G0112500 Rhododendron simsii HOM05D000300 ORTHO05D008589 3.7e-07 57.8 39 64.1
RcHm_v2.0_Chr4g0410731 Rosa chinensis HOM05D000300 ORTHO05D008589 3.7e-07 57.8 39 71.8
arahy.Tifrunner.gnm1.ann1.42J6NL Arachis hypogaea HOM05D000300 ORTHO05D008589 4.9e-07 57.4 45 60.0
Peaxi162Scf00619g00118 Petunia axillaris HOM05D000300 ORTHO05D008589 6.4e-07 57.0 39 64.1
MELO3C011969.2 Cucumis melo HOM05D000300 ORTHO05D008589 8.3e-07 56.6 39 69.2
MBI10_g00725_MAGBIO Magnolia biondii HOM05D000300 ORTHO05D008589 8.3e-07 56.6 39 71.8
Actinidia15078 Actinidia chinensis HOM05D000300 ORTHO05D008589 1.1e-06 56.2 39 64.1
CsaV3_5G031290 Cucumis sativus L. HOM05D000300 ORTHO05D008589 1.1e-06 56.2 39 69.2
Nn1g07760 Nelumbo nucifera HOM05D000300 ORTHO05D008589 1.1e-06 56.2 39 64.1
QL03p058646 Quercus lobata HOM05D000300 ORTHO05D008589 1.1e-06 56.2 39 69.2
QL93p0114_0053 Quercus lobata HOM05D000300 ORTHO05D008589 1.1e-06 56.2 39 69.2
TAR622G0935 Trochodendron aralioides HOM05D000300 ORTHO05D008589 1.1e-06 56.2 38 68.4
VMungo0251G3375 Vigna mungo HOM05D000300 ORTHO05D008589 1.1e-06 56.2 39 69.2
CiPaw.05G184500 Carya illinoinensis HOM05D000300 ORTHO05D008589 1.4e-06 55.8 39 66.7
Migut.F01726 Erythranthe guttata HOM05D000300 ORTHO05D008589 1.4e-06 55.8 39 64.1
Actinidia37413 Actinidia chinensis HOM05D000300 ORTHO05D008589 1.9e-06 55.5 39 61.5
SGA_v2.0_scaffold2G01367 Striga asiatica HOM05D000300 ORTHO05D008589 1.9e-06 55.5 39 69.2
TAR445G0002 Trochodendron aralioides HOM05D000300 ORTHO05D008589 1.9e-06 55.5 38 68.4
Cc02_g11080 Coffea canephora HOM05D000300 ORTHO05D008589 2.4e-06 55.1 39 61.5
Sed0003725 Sechium edule HOM05D000300 ORTHO05D008589 2.4e-06 55.1 39 64.1
MSTRG.383 Avicennia marina HOM05D000300 ORTHO05D008589 3.2e-06 54.7 39 64.1
ClCG05G025610 Citrullus lanatus HOM05D000300 ORTHO05D008589 3.2e-06 54.7 39 66.7
COL.COLO4_24238 Corchorus olitorius HOM05D000300 ORTHO05D008589 3.2e-06 54.7 39 66.7
MD13G1097100 Malus domestica HOM05D000300 ORTHO05D008589 3.2e-06 54.7 39 66.7
Oeu000812.1 Olea europaea HOM05D000300 ORTHO05D008589 3.2e-06 54.7 39 64.1
PGR119G0150 Punica granatum HOM05D000300 ORTHO05D008589 3.2e-06 54.7 39 64.1
SalBow6G5959 Salvia bowleyana HOM05D000300 ORTHO05D008589 3.2e-06 54.7 39 61.5
AUR62005434 Chenopodium quinoa HOM05D000300 ORTHO05D008589 4.1e-06 54.3 49 51.0
Eucgr.H02521 Eucalyptus grandis HOM05D000300 ORTHO05D008589 4.1e-06 54.3 38 65.8
Aa31LG2G9770 Aethionema arabicum HOM05D000300 ORTHO05D008589 5.4e-06 53.9 39 64.1
BcaB04g20283 Brassica carinata HOM05D000300 ORTHO05D008589 5.4e-06 53.9 38 65.8
Cpa.g.sc1088.4 Carica papaya HOM05D000300 ORTHO05D008589 5.4e-06 53.9 38 65.8
CDE01G0685 Ceratophyllum demersum HOM05D000300 ORTHO05D000383 5.4e-06 53.9 39 56.4
Dinv24810 Davidia involucrata HOM05D000300 ORTHO05D008589 5.4e-06 53.9 39 59.0
Lalb_Chr05g0228351 Lupinus albus HOM05D000300 ORTHO05D008589 5.4e-06 53.9 39 66.7
Nitab4.5_0008095g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008589 5.4e-06 53.9 39 64.1
Os04g0320200 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008589 5.4e-06 53.9 39 61.5
Solyc11g006380.2 Solanum lycopersicum HOM05D000300 ORTHO05D008589 5.4e-06 53.9 39 59.0
Sopen11g002280 Solanum pennellii HOM05D000300 ORTHO05D008589 5.4e-06 53.9 39 59.0
unitig_736.g22331 Utricularia gibba HOM05D000300 ORTHO05D008589 5.4e-06 53.9 39 69.2
Ah.03g133200 Amaranthus hybridus HOM05D000300 ORTHO05D008589 7.0e-06 53.5 39 61.5
A01p29490 Brassica napus HOM05D000300 ORTHO05D008589 7.0e-06 53.5 38 65.8
BraA01t03083Z Brassica rapa HOM05D000300 ORTHO05D008589 7.0e-06 53.5 38 65.8
Zm00001eb378440 Zea mays HOM05D000300 ORTHO05D008589 7.0e-06 53.5 39 59.0
CSS0045194 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008589 9.2e-06 53.1 39 64.1
GSVIVG01006654001 Vitis vinifera HOM05D000300 ORTHO05D008589 9.2e-06 53.1 39 56.4


User provided reference genes

Program Settings