Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 8.2e-100 367.1 189 100.0
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.1e-46 190.7 201 58.2
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.3e-25 120.6 203 43.3
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.8e-23 112.8 192 42.7
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 9.0e-22 107.8 180 40.0
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 1.2e-21 107.5 212 41.0
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 4.5e-21 105.5 189 38.1
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 1.7e-20 103.6 214 38.8
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 1.7e-20 103.6 214 38.8
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 3.8e-20 102.4 216 35.6
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 4.9e-20 102.1 200 37.5
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 2.5e-19 99.8 214 36.4
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.2e-19 99.4 183 42.1
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 3.2e-19 99.4 191 41.4
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 7.1e-19 98.2 188 39.4
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 1.6e-18 97.1 189 37.0
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.6e-18 97.1 186 42.5
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 2.7e-18 96.3 196 37.8
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.7e-18 96.3 186 41.9
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 6.0e-18 95.1 194 37.6
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.8e-17 93.6 186 41.4
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 1.8e-17 93.6 200 40.5
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 2.3e-17 93.2 193 35.8
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 3.0e-17 92.8 190 38.9
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 3.9e-17 92.4 160 38.1
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 3.9e-17 92.4 194 38.1
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 5.1e-17 92.0 181 37.0
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.1e-16 90.9 209 37.8
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 1.9e-16 90.1 187 35.8
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 1.9e-16 90.1 170 38.2
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 2.5e-16 89.7 191 38.7
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 3.3e-16 89.4 197 37.1
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 4.3e-16 89.0 170 36.5
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 5.6e-16 88.6 190 34.7
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 9.6e-16 87.8 195 38.5
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 1.3e-15 87.4 193 40.4
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 1.3e-15 87.4 178 38.2
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 1.6e-15 87.0 188 35.6
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 1.6e-15 87.0 176 37.5
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 2.1e-15 86.7 79 58.2
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 2.8e-15 86.3 170 34.7
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 2.8e-15 86.3 179 37.4
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 4.8e-15 85.5 176 35.8
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 6.2e-15 85.1 199 36.7
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 6.2e-15 85.1 190 40.0
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 6.2e-15 85.1 177 37.9
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 8.2e-15 84.7 195 34.9
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 1.1e-14 84.3 158 35.4
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 1.1e-14 84.3 193 35.2
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 1.1e-14 84.3 158 35.4
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 1.4e-14 84.0 191 36.6
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.4e-14 84.0 203 35.5
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.4e-14 84.0 196 36.2
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 1.8e-14 83.6 189 36.0
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 1.8e-14 83.6 195 34.9
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.8e-14 83.6 196 36.7
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 2.4e-14 83.2 201 36.3
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 3.1e-14 82.8 190 36.8
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 3.1e-14 82.8 190 36.8
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 3.1e-14 82.8 162 35.2
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 3.1e-14 82.8 201 37.8
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 3.1e-14 82.8 201 37.8
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 3.1e-14 82.8 193 36.8
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 3.1e-14 82.8 184 36.4
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 5.3e-14 82.0 192 37.0
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 5.3e-14 82.0 194 38.7
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 5.3e-14 82.0 167 37.7
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 5.3e-14 82.0 79 58.2
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 5.3e-14 82.0 152 36.2
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 6.9e-14 81.6 187 35.8
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 6.9e-14 81.6 128 41.4
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 6.9e-14 81.6 166 34.3
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 9.0e-14 81.3 155 39.4
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 9.0e-14 81.3 220 32.7
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 9.0e-14 81.3 186 36.0
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 9.0e-14 81.3 194 35.1
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 1.2e-13 80.9 197 35.0
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.5e-13 80.5 201 37.8
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 2.6e-13 79.7 196 34.7
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 4.5e-13 79.0 167 36.5
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 4.5e-13 79.0 195 34.9
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 4.5e-13 79.0 178 36.5
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 5.8e-13 78.6 78 53.8
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 7.6e-13 78.2 191 33.5
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.0e-12 77.8 76 52.6
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 1.0e-12 77.8 173 35.8
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.7e-12 77.0 167 35.9
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 1.7e-12 77.0 197 35.0
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 2.2e-12 76.6 216 34.3
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 2.9e-12 76.3 193 33.7
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.9e-12 76.3 76 53.9
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 2.9e-12 76.3 76 53.9
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 2.9e-12 76.3 180 36.1
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 3.8e-12 75.9 196 34.2
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 3.8e-12 75.9 80 51.2
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 3.8e-12 75.9 73 56.2
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 4.9e-12 75.5 196 34.2
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 4.9e-12 75.5 109 47.7
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 8.4e-12 74.7 194 34.5
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 1.1e-11 74.3 147 42.9
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 1.4e-11 73.9 195 34.9
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 1.4e-11 73.9 183 35.5
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 1.4e-11 73.9 183 35.5
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 1.4e-11 73.9 203 37.4
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.9e-11 73.6 201 33.8
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.9e-11 73.6 72 55.6
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 3.2e-11 72.8 203 33.5
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 4.2e-11 72.4 178 34.8
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 9.3e-11 71.2 68 54.4
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.2e-10 70.9 149 40.9
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.2e-10 70.9 79 53.2
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 2.1e-10 70.1 165 33.9
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 2.7e-10 69.7 96 43.8
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 2.7e-10 69.7 73 50.7
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 4.6e-10 68.9 94 43.6
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 6.1e-10 68.6 79 53.2
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 6.1e-10 68.6 79 53.2
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.0e-09 67.8 69 50.7
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 1.0e-09 67.8 179 31.3
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 1.3e-09 67.4 174 32.8
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 1.8e-09 67.0 174 34.5
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.8e-09 67.0 72 50.0
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 2.3e-09 66.6 133 36.1
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 3.9e-09 65.9 168 33.9
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 5.1e-09 65.5 199 33.2
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 1.1e-08 64.3 175 32.6
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 1.5e-08 63.9 71 49.3
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 1.5e-08 63.9 69 44.9
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 3.3e-08 62.8 185 31.9
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 7.4e-08 61.6 175 31.4
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 7.4e-08 61.6 175 31.4
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 1.6e-07 60.5 57 54.4
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 2.2e-07 60.1 148 29.7
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 3.7e-07 59.3 185 30.8
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 3.7e-07 59.3 91 41.8
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 6.3e-07 58.5 220 29.5
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 6.3e-07 58.5 193 33.7
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 6.3e-07 58.5 79 44.3
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 8.2e-07 58.2 78 44.9
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 8.2e-07 58.2 64 46.9
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 1.1e-06 57.8 204 32.4
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 1.1e-06 57.8 82 45.1
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 2.4e-06 56.6 89 41.6
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 3.1e-06 56.2 142 34.5
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 4.1e-06 55.8 158 33.5
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 6.9e-06 55.1 139 38.1


User provided reference genes

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