Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 7.2e-223 776.9 397 100.0
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 6.4e-163 577.8 397 74.8
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 8.4e-163 577.4 397 74.3
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.9e-162 576.2 399 74.7
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.9e-162 576.2 399 74.7
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 2.1e-161 572.8 397 73.8
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 4.6e-161 571.6 398 74.1
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 1.3e-160 570.1 397 74.3
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 2.3e-160 569.3 369 77.5
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 3.0e-160 568.9 398 73.4
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 3.9e-160 568.5 400 74.0
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 3.9e-160 568.5 402 72.1
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 6.7e-160 567.8 398 72.6
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 8.7e-160 567.4 402 71.4
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.1e-159 567.0 397 73.3
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.5e-159 566.6 397 73.3
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 2.5e-159 565.8 397 73.0
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 3.3e-159 565.5 399 71.9
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 4.3e-159 565.1 399 73.4
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 4.3e-159 565.1 398 72.4
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 1.3e-158 563.5 397 72.3
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 1.6e-158 563.1 397 70.3
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 1.6e-158 563.1 397 72.0
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 1.6e-158 563.1 399 71.7
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 2.1e-158 562.8 387 71.6
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 2.1e-158 562.8 340 80.9
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 2.8e-158 562.4 396 72.2
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 2.8e-158 562.4 398 72.6
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 2.8e-158 562.4 397 72.0
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 2.8e-158 562.4 397 72.0
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 3.7e-158 562.0 412 72.6
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 3.7e-158 562.0 397 72.5
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.7e-158 562.0 397 72.5
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 6.2e-158 561.2 398 72.4
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 1.4e-157 560.1 400 70.0
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 1.8e-157 559.7 396 72.2
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 2.4e-157 559.3 389 70.7
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.1e-157 558.9 397 72.3
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 3.1e-157 558.9 374 74.9
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 3.1e-157 558.9 402 72.4
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 4.0e-157 558.5 397 71.3
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 9.0e-157 557.4 389 72.5
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 1.5e-156 556.6 359 76.3
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 1.5e-156 556.6 405 70.6
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.0e-156 556.2 399 71.7
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 2.0e-156 556.2 392 73.0
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 2.6e-156 555.8 367 74.9
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 3.4e-156 555.4 389 70.2
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 5.8e-156 554.7 402 71.6
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 7.6e-156 554.3 398 71.6
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 1.0e-155 553.9 394 69.8
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 1.3e-155 553.5 401 71.8
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 3.8e-155 552.0 400 70.8
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 6.5e-155 551.2 398 70.6
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 8.4e-155 550.8 399 70.9
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 1.4e-154 550.1 387 73.1
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 1.9e-154 549.7 395 70.9
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 1.9e-154 549.7 405 69.6
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 3.2e-154 548.9 397 70.8
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 4.2e-154 548.5 368 73.6
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 7.1e-154 547.7 391 70.1
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 6.0e-153 544.7 391 69.8
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 1.3e-152 543.5 353 75.6
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 1.3e-152 543.5 346 76.9
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 1.3e-152 543.5 398 70.6
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 3.9e-152 542.0 395 70.1
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 8.7e-152 540.8 360 73.6
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 2.5e-151 539.3 365 73.7
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 4.3e-151 538.5 405 69.4
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 1.3e-150 537.0 347 76.1
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 1.3e-150 537.0 398 68.8
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 1.6e-150 536.6 365 73.4
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 2.2e-150 536.2 346 76.6
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 4.8e-150 535.0 420 66.9
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 1.1e-149 533.9 407 67.8
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.1e-149 533.9 397 69.0
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 6.9e-149 531.2 371 71.2
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 1.5e-148 530.0 407 67.1
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 2.6e-148 529.3 401 67.1
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 1.0e-147 527.3 406 66.5
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 2.9e-147 525.8 406 66.3
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 6.5e-147 524.6 408 66.4
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 1.1e-146 523.9 397 67.5
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 1.9e-146 523.1 408 66.2
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 4.2e-146 521.9 429 64.1
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 5.5e-146 521.5 345 74.2
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 6.1e-145 518.1 408 65.2
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 6.1e-145 518.1 398 67.8
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 1.8e-144 516.5 408 64.7
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 3.3e-143 512.3 411 65.0
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 7.4e-143 511.1 395 66.6
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 1.7e-142 510.0 499 57.7
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 2.0e-140 503.1 402 65.7
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 1.0e-139 500.7 337 71.8
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 3.2e-138 495.7 401 65.6
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 3.2e-138 495.7 388 64.4
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 4.2e-138 495.4 395 67.3
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 4.8e-134 481.9 306 77.5
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 2.4e-133 479.6 306 77.1
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 2.0e-132 476.5 345 66.4
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 1.1e-125 454.1 283 79.2
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 1.8e-120 436.8 371 62.0
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 5.2e-120 435.3 427 56.4
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 7.0e-109 398.3 338 58.0
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 7.8e-76 288.5 245 63.3
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 2.1e-73 280.4 245 61.2
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 4.7e-73 279.3 232 62.5
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 8.9e-72 275.0 212 67.9
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 9.3e-69 265.0 160 78.8
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 2.3e-67 260.4 224 62.9
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 6.6e-67 258.8 203 61.1
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.1e-64 251.5 222 60.8
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 7.6e-55 218.8 260 51.2
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 6.7e-51 205.7 205 55.6
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 2.5e-50 203.8 230 50.4
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 2.5e-45 187.2 170 62.4
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 1.8e-43 181.0 110 78.2
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 3.3e-42 176.8 141 66.0
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 8.2e-41 172.2 110 72.7
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 2.4e-40 170.6 351 35.6
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 3.1e-40 170.2 110 73.6
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 2.0e-39 167.5 100 79.0
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 3.4e-39 166.8 349 32.7
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 2.8e-33 147.1 287 32.4
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.1e-32 145.2 142 57.0
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 5.0e-30 136.3 266 30.8
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.1e-29 135.2 146 52.1
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.5e-29 134.0 146 51.4
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 4.1e-24 116.7 261 32.6
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 2.5e-21 107.5 78 67.9
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 3.2e-21 107.1 210 33.3
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 5.7e-18 96.3 60 75.0
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 1.1e-16 92.0 83 62.7
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 1.1e-16 92.0 65 69.2
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 5.3e-16 89.7 65 69.2
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 9.1e-16 89.0 82 56.1
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.5e-15 88.2 50 86.0
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 2.0e-15 87.8 108 48.1
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 2.6e-15 87.4 198 29.8
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 2.2e-14 84.3 80 58.8
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 2.2e-14 84.3 80 58.8
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 3.8e-14 83.6 49 75.5
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.0e-14 83.2 53 71.7
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 6.5e-14 82.8 55 69.1
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.5e-13 81.6 52 71.2
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 1.9e-13 81.3 51 70.6
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 3.2e-13 80.5 52 67.3
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.1e-12 77.8 52 69.2
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 4.7e-12 76.6 51 62.7
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 6.1e-12 76.3 46 73.9
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.4e-11 75.1 48 70.8
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.4e-11 75.1 48 70.8
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 2.6e-10 70.9 40 87.5
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 7.5e-10 69.3 40 85.0


User provided reference genes

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