Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 6.4e-216 753.8 385 100.0
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 3.9e-205 718.0 376 97.6
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 1.3e-99 367.5 273 70.3
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 3.2e-98 362.8 279 68.1
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 1.1e-95 354.4 271 68.6
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 1.9e-95 353.6 293 64.5
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 3.3e-95 352.8 274 67.9
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 4.3e-95 352.4 271 68.6
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 5.6e-95 352.1 283 65.7
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 7.3e-95 351.7 289 65.7
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 7.3e-95 351.7 310 61.9
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 3.6e-94 349.4 273 67.0
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 1.1e-93 347.8 274 65.7
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.4e-93 347.4 274 66.1
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 1.8e-93 347.1 312 60.6
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 2.3e-93 346.7 309 61.5
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 3.1e-93 346.3 354 55.9
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 4.0e-93 345.9 295 62.4
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 6.8e-93 345.1 262 69.5
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.2e-92 344.4 274 65.0
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 1.2e-92 344.4 305 59.7
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 1.5e-92 344.0 261 69.0
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 3.4e-92 342.8 313 60.7
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 5.8e-92 342.0 305 59.0
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 7.5e-92 341.7 287 63.4
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 9.9e-92 341.3 267 67.0
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 2.2e-91 340.1 289 64.0
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 2.2e-91 340.1 295 63.4
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 2.2e-91 340.1 280 65.7
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 2.2e-91 340.1 316 59.5
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 2.9e-91 339.7 312 59.3
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 3.7e-91 339.3 324 59.3
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 3.7e-91 339.3 267 66.7
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 4.9e-91 339.0 282 63.8
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 8.3e-91 338.2 290 62.8
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 5.4e-90 335.5 345 56.2
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 5.4e-90 335.5 342 57.3
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 7.1e-90 335.1 270 65.6
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 7.1e-90 335.1 270 62.6
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 9.2e-90 334.7 262 68.3
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 1.2e-89 334.3 334 56.6
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 1.6e-89 334.0 333 56.2
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 2.1e-89 333.6 277 63.5
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 2.7e-89 333.2 310 58.7
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 2.7e-89 333.2 289 61.2
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 2.7e-89 333.2 279 63.4
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 2.7e-89 333.2 307 58.0
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 4.6e-89 332.4 314 58.9
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 6.0e-89 332.0 334 56.0
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 7.8e-89 331.6 302 57.3
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 7.8e-89 331.6 285 62.5
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 1.0e-88 331.3 268 64.9
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 1.0e-88 331.3 284 62.3
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 1.0e-88 331.3 289 61.6
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 1.0e-88 331.3 288 62.5
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 5.1e-88 328.9 297 59.9
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 5.1e-88 328.9 269 63.2
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 8.6e-88 328.2 276 62.3
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 1.1e-87 327.8 298 58.4
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 2.5e-87 326.6 318 57.5
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 4.3e-87 325.9 266 64.3
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 4.3e-87 325.9 293 60.8
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 5.6e-87 325.5 263 66.9
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 7.3e-87 325.1 266 64.3
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 7.3e-87 325.1 263 64.6
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 7.3e-87 325.1 351 52.4
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 9.5e-87 324.7 262 65.3
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 1.2e-86 324.3 279 62.7
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.6e-86 323.9 312 55.8
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 1.6e-86 323.9 273 64.5
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 2.1e-86 323.6 304 57.9
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 3.6e-86 322.8 262 64.1
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 3.6e-86 322.8 356 52.0
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 3.6e-86 322.8 325 54.5
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 8.1e-86 321.6 304 57.6
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 1.1e-85 321.2 370 51.6
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.1e-85 321.2 265 62.6
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 1.4e-85 320.9 270 64.1
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.4e-85 320.9 298 59.7
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 2.4e-85 320.1 284 60.2
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 3.1e-85 319.7 330 53.0
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 3.1e-85 319.7 299 57.2
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 4.0e-85 319.3 318 57.2
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 4.0e-85 319.3 311 55.9
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 4.0e-85 319.3 262 63.4
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 4.0e-85 319.3 318 57.2
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 6.8e-85 318.5 360 51.7
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 6.8e-85 318.5 282 60.6
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 2.6e-84 316.6 283 59.0
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 9.9e-84 314.7 349 53.3
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.1e-82 311.2 298 58.7
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 3.2e-82 309.7 317 55.2
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 4.1e-82 309.3 311 54.7
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 5.4e-82 308.9 332 55.4
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 5.4e-82 308.9 290 58.3
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 2.7e-81 306.6 328 54.3
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 3.5e-81 306.2 285 58.6
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 7.8e-81 305.1 276 61.2
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 1.3e-80 304.3 380 48.4
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 1.1e-79 301.2 274 56.6
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 1.9e-79 300.4 322 54.3
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 1.6e-78 297.4 370 48.9
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 4.0e-77 292.7 293 56.0
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 1.7e-75 287.3 338 48.2
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 4.9e-75 285.8 260 59.6
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 4.9e-75 285.8 269 58.0
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 2.1e-73 280.4 312 51.9
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 2.5e-71 273.5 284 52.1
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 3.1e-69 266.5 295 51.2
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 1.7e-67 260.8 281 51.6
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 1.6e-65 254.2 260 53.1
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 3.5e-65 253.1 273 49.8
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 1.3e-62 244.6 276 48.9
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 1.6e-62 244.2 208 61.5
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 6.4e-59 232.3 173 67.6
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 4.0e-53 213.0 231 54.5
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 1.4e-45 188.0 143 69.9
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 6.7e-40 169.1 246 43.1
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 2.5e-39 167.2 259 39.8
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 7.4e-39 165.6 259 39.8
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 1.5e-36 157.9 274 35.8
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 1.6e-33 147.9 203 46.8
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 3.0e-24 117.1 193 44.0
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 1.5e-23 114.8 192 44.3
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 2.8e-22 110.5 77 75.3
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 4.8e-22 109.8 110 51.8
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 4.1e-21 106.7 171 40.9
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 4.7e-17 93.2 114 45.6
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.4e-13 81.6 70 57.1
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 2.9e-11 73.9 96 47.9
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 8.0e-09 65.9 116 36.2
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 7.5e-07 59.3 59 57.6


User provided reference genes

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