Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 3.2e-138 495.4 298 100.0
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 1.6e-60 237.3 215 58.6
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 5.9e-60 235.3 215 61.4
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 5.5e-58 228.8 206 57.3
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 1.2e-57 227.6 208 58.2
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 1.6e-57 227.3 210 59.5
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.1e-57 226.9 207 60.9
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 3.6e-57 226.1 214 59.3
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 8.0e-57 224.9 214 58.4
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 1.8e-56 223.8 211 58.3
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 3.0e-56 223.0 207 58.5
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 3.0e-56 223.0 210 58.6
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 4.0e-56 222.6 210 58.6
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 4.0e-56 222.6 206 57.3
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 4.0e-56 222.6 207 59.4
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 6.7e-56 221.9 216 56.5
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 8.8e-56 221.5 210 57.1
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 1.1e-55 221.1 215 54.4
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 2.6e-55 219.9 213 57.7
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 2.6e-55 219.9 219 54.8
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 2.6e-55 219.9 211 56.4
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 4.4e-55 219.2 215 57.2
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 5.7e-55 218.8 216 55.1
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 5.7e-55 218.8 218 52.8
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 7.5e-55 218.4 209 56.9
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 7.5e-55 218.4 209 57.4
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 7.5e-55 218.4 210 56.7
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 9.7e-55 218.0 213 53.1
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 9.7e-55 218.0 221 51.6
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 9.7e-55 218.0 216 53.2
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 9.7e-55 218.0 216 56.0
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 9.7e-55 218.0 214 55.6
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 1.3e-54 217.6 215 53.5
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 1.7e-54 217.2 217 51.6
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 1.7e-54 217.2 209 56.9
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 2.2e-54 216.9 213 55.4
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 2.2e-54 216.9 216 54.6
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.2e-54 216.9 207 59.4
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 3.7e-54 216.1 213 55.9
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 3.7e-54 216.1 213 55.9
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 3.7e-54 216.1 215 55.8
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 4.8e-54 215.7 207 58.9
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 6.3e-54 215.3 212 58.0
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 6.3e-54 215.3 212 58.0
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 8.2e-54 214.9 215 55.3
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 8.2e-54 214.9 215 55.3
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 1.1e-53 214.5 227 53.7
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 1.1e-53 214.5 211 54.5
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 1.1e-53 214.5 209 55.0
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 1.8e-53 213.8 211 55.5
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 1.8e-53 213.8 211 56.9
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 2.4e-53 213.4 215 54.9
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 3.1e-53 213.0 216 52.8
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 3.1e-53 213.0 224 53.1
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 4.1e-53 212.6 216 53.2
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 4.1e-53 212.6 216 52.8
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 4.1e-53 212.6 216 53.2
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 4.1e-53 212.6 211 55.5
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 7.0e-53 211.8 226 51.8
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 1.2e-52 211.1 221 52.9
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 1.2e-52 211.1 223 53.4
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 1.6e-52 210.7 214 55.6
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 2.0e-52 210.3 216 55.1
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 2.0e-52 210.3 209 56.0
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 2.0e-52 210.3 210 54.3
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 2.7e-52 209.9 212 52.4
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 2.7e-52 209.9 210 54.8
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 4.5e-52 209.1 211 55.9
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 4.5e-52 209.1 213 56.8
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 5.9e-52 208.8 204 57.4
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 5.9e-52 208.8 211 56.4
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 7.7e-52 208.4 213 53.5
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.9e-51 206.5 206 54.9
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 2.9e-51 206.5 212 53.8
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 3.8e-51 206.1 218 50.9
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 3.8e-51 206.1 209 55.0
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 8.5e-51 204.9 218 51.8
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 8.5e-51 204.9 211 53.6
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 8.5e-51 204.9 214 51.4
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 8.5e-51 204.9 223 51.1
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 1.5e-50 204.1 213 53.5
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 1.5e-50 204.1 209 53.6
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 1.9e-50 203.8 223 52.0
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 2.5e-50 203.4 213 53.1
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 2.5e-50 203.4 215 54.0
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 2.5e-50 203.4 217 49.3
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 3.2e-50 203.0 217 53.0
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 4.2e-50 202.6 218 51.4
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 4.2e-50 202.6 209 53.1
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 4.2e-50 202.6 216 53.2
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 5.5e-50 202.2 213 52.1
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 7.2e-50 201.8 217 51.2
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 9.4e-50 201.4 228 50.9
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 9.4e-50 201.4 221 51.6
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 9.4e-50 201.4 212 53.8
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 1.6e-49 200.7 219 52.1
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 1.6e-49 200.7 212 55.2
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 2.1e-49 200.3 217 54.8
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 2.7e-49 199.9 215 51.6
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 3.6e-49 199.5 213 49.8
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 3.6e-49 199.5 216 53.2
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 4.7e-49 199.1 214 50.9
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 1.4e-48 197.6 220 51.4
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 1.4e-48 197.6 217 52.1
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 2.3e-48 196.8 213 50.7
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 5.2e-48 195.7 212 51.4
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 2.0e-47 193.7 209 50.7
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 7.5e-47 191.8 223 48.0
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 1.7e-46 190.7 211 54.5
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 2.7e-44 183.3 264 44.3
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 2.7e-44 183.3 264 44.3
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 2.1e-41 173.7 209 47.8
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 2.7e-41 173.3 214 49.5
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 3.6e-41 172.9 200 49.0
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 2.6e-39 166.8 220 45.9
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 2.6e-39 166.8 201 46.3
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 7.0e-37 158.7 220 44.5
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 1.0e-35 154.8 158 51.9
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 1.0e-35 154.8 246 42.3
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 1.3e-35 154.5 154 55.8
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 1.2e-33 147.9 183 50.3
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.3e-32 143.7 193 46.6
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 3.0e-27 126.7 212 36.3
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 3.9e-27 126.3 150 50.0
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 6.4e-22 109.0 113 53.1
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 4.1e-21 106.3 102 59.8
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 1.1e-16 91.7 181 37.0
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 2.0e-15 87.4 131 42.0
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 5.8e-15 85.9 206 36.4
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 7.3e-10 68.9 90 48.9
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 2.1e-09 67.4 52 53.8
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 6.2e-09 65.9 73 53.4
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 6.8e-08 62.4 46 56.5
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 3.4e-07 60.1 48 47.9


User provided reference genes

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